jgi.p|Nanoce1779_2|360750, mRNA_3440 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|360750
Unique Name	mRNA_3440
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1790
Alignment location	scaffold_6:333340..335129 -

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Properties


Property Name	Value
TranscriptId	360836
Track	FilteredModels2
ProteinId	360750

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:333340..335129 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|360750	gene_3440	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|360750	mRNA_3440-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3440	CDS_3440	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:333340..335129-
coding sequence from alignment at scaffold_6:333340..335129-

mRNA sequence

>mRNA_3440 ID=mRNA_3440|Name=jgi.p|Nanoce1779_2|360750|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp
ACCCACCCTCCTCCCAACATCCTGAAAGAGAAGACGCGTTGCTGCGTGCG
GAAGTGGTGCGGCTGGGTGGACGCAAGGCGGCGCTCAAGGCTGCGCTTGT
TGGAAGCCAAGGGCGGGGAGGTTGAGCCTGGGGAGTGTCCATCTAAGATG
ATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCACCGG
TGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGCGCG
TGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCTAGT
CCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCACGGG
CTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTTTTG
TGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCCGTT
TTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGCATA
TGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGGCCG
CCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATTGAC
TCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGTGGG
AATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACTGCT
TCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATCGAA
GGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCTGAG
ACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATTTAC
AGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTTTCA
GTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTACTT
AAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAGAGA
AAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATGAAA
TCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGGGGT
GATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGAAAA
AAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAATGAG
ATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGTAGA
GGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCTTGG
AGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCGAAG
GGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGATGA
AGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTATGAT
CGATTGGGGTACGACGATGAATGGTAATGGCGTGGAAGGGAGGGAGGGAC
AGAGGGAGAGAGGAGAGAGGAAGGAGTGGTAACCAAATGGAACGACGTAA
GAAAATGTAGAAGGTAGAATAAAAGAACGCCAAGAAGGAAGATTTGCAAG
CGAAATAGAACGACATTGAATAGGAGAAGGAGGAGGAGGATGGGCCAACA
TTCACTTGTCAGGTAACAGGTAACTTACTGGATGTAACATGTCTCAAATC
AGCTTGGATACCGGGCAAATTCATAATGCAATGCGCAGGG

protein sequence of jgi.p|Nanoce1779_2|360750

>mRNA_3440-protein ID=mRNA_3440-protein|Name=jgi.p|Nanoce1779_2|360750|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MICLGLNFVLMVVYLATGAQTFFVRPTMTMTTMRVPHEAPLRRHSGVPVA
SPGRLSLASLQVNQQLTGSVVSIYDGPAGHRKLFVDVGITRTDKQGKYFP
VFGMVRLQGPYQNRTYAYGQRLDVLYVDEVYLGAARLLLRLTPVFKRPAI
DSAGRPLPVYRLQDLKVGMPLLNGTVVSVTENYCFIDAGVVRGQSAEEQI
EGSEDGQGDGREPRKRLRQPKPRRLNGRLYRLDLQEKYALSEKYKTALTL
SVLTPGMSLPVYVKGVYLNSWQYSLTVDPSITEEKAAALKEDRAAQLLAM
KSKQPVDALLLGESRKGVITKILPGGVKVGIGVKKTGFVSLDSVSEAYGN
EIKDLKRVLVVGGRLQVEVDRISEDGEKIDLRCLEIYPQEAVVKKKVANA
KGKGKGGRAKVMEKKEDEEGERRKQKKYDDDDDDDDDDDDDDDDDDDDDY
DRLGYDDEW*

mRNA from alignment at scaffold_6:333340..335129-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3440 ID=mRNA_3440|Name=jgi.p|Nanoce1779_2|360750|organism=Nannochloropsis oceanica|type=mRNA|length=1790bp|location=Sequence derived from alignment at scaffold_6:333340..335129- (Nannochloropsis oceanica)
ACCCACCCTCCTCCCAACATCCTGAAAGAGAAGACGCGTTGCTGCGTGCG
GAAGTGGTGCGGCTGGGTGGACGCAAGGCGGCGCTCAAGGCTGCGCTTGT
TGGAAGCCAAGGGCGGGGAGGTTGAGCCTGGGGAGTGTCCATCTAAGATG
ATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCACCGG
TGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGCGCG
TGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCTAGT
CCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCACGGG
CTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTTTTG
TGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCCGTT
TTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGCATA
TGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGGCCG
CCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATTGAC
TCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGTGGG
AATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACTGCT
TCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATCGAA
GGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCTGAG
ACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATTTAC
AGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTTTCA
GTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTACTT
AAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAGAGA
AAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATGAAA
TCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGGGGT
GATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGAAAA
AAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAATGAG
ATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGTAGA
GGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCTTGG
AGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCGAAG
GGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGATGA
AGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTATGAT
CGATTGGGGTACGACGATGAATGGTAATGGCGTGGAAGGGAGGGAGGGAC
AGAGGGAGAGAGGAGAGAGGAAGGAGTGGTAACCAAATGGAACGACGTAA
GAAAATGTAGAAGGTAGAATAAAAGAACGCCAAGAAGGAAGATTTGCAAG
CGAAATAGAACGACATTGAATAGGAGAAGGAGGAGGAGGATGGGCCAACA
TTCACTTGTCAGGTAACAGGTAACTTACTGGATGTAACATGTCTCAAATC
AGCTTGGATACCGGGCAAATTCATAATGCAATGCGCAGGG

Coding sequence (CDS) from alignment at scaffold_6:333340..335129-

>mRNA_3440 ID=mRNA_3440|Name=jgi.p|Nanoce1779_2|360750|organism=Nannochloropsis oceanica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_6:333340..335129- (Nannochloropsis oceanica)
ATGATTTGCCTAGGCCTCAACTTCGTCCTCATGGTGGTATACCTTGCCAC
CGGTGCGCAGACGTTTTTTGTCCGACCAACCATGACGATGACGACGATGC
GCGTGCCCCATGAGGCGCCGTTGCGGCGGCATAGTGGGGTGCCTGTCGCT
AGTCCAGGCCGCCTCTCCCTTGCCTCACTCCAGGTCAATCAGCAGCTCAC
GGGCTCGGTCGTCAGCATCTACGATGGTCCCGCTGGACATCGCAAGCTTT
TTGTGGACGTCGGCATCACCCGTACGGACAAGCAAGGGAAGTACTTCCCC
GTTTTCGGGATGGTGCGTCTGCAAGGGCCATACCAGAATAGGACCTATGC
ATATGGCCAGCGATTGGACGTCTTGTACGTTGATGAAGTCTACCTGGGGG
CCGCCCGTCTGCTCCTCCGCCTGACACCCGTGTTTAAACGCCCAGCAATT
GACTCAGCTGGACGGCCTTTGCCTGTGTATAGGCTACAGGATTTAAAGGT
GGGAATGCCACTATTAAATGGCACTGTCGTGAGCGTCACGGAGAACTACT
GCTTCATCGACGCAGGGGTCGTGCGTGGGCAGTCGGCCGAGGAGCAAATC
GAAGGGAGCGAAGATGGTCAAGGAGATGGAAGAGAGCCGCGCAAAAGGCT
GAGACAACCCAAGCCGCGGAGATTGAACGGGCGGCTATACCGCTTGGATT
TACAGGAGAAATATGCCTTGTCCGAAAAGTACAAGACGGCCTTGACACTT
TCAGTTCTCACACCTGGTATGTCCCTTCCCGTTTACGTCAAAGGCGTTTA
CTTAAATTCCTGGCAGTATTCCCTCACTGTTGATCCTTCCATCACGGAAG
AGAAAGCCGCCGCGCTCAAGGAGGATAGGGCAGCACAGTTACTGGCAATG
AAATCCAAGCAACCAGTCGATGCCCTCCTACTTGGGGAATCCCGCAAGGG
GGTGATCACCAAAATCCTACCCGGTGGGGTCAAAGTCGGAATAGGTGTGA
AAAAAACGGGTTTCGTGTCACTAGATTCGGTGAGCGAAGCATACGGGAAT
GAGATAAAGGATTTGAAGAGGGTGTTGGTGGTAGGGGGAAGGTTACAGGT
AGAGGTGGATCGGATCTCAGAGGATGGAGAGAAGATTGACTTGAGATGCT
TGGAGATCTATCCGCAAGAGGCCGTGGTTAAAAAAAAGGTGGCCAATGCG
AAGGGAAAGGGGAAGGGAGGAAGGGCGAAGGTAATGGAGAAAAAGGAGGA
TGAAGAGGGTGAAAGAAGGAAACAGAAGAAGTATGATGATGATGATGATG
ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTAT
GATCGATTGGGGTACGACGATGAATGGTAA

Synonyms

Publications