jgi.p|Nanoce1779_2|577049, mRNA_344 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577049
Unique Name	mRNA_344
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1645
Alignment location	scaffold_3:846843..848487 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577135
Track	FilteredModels2
ProteinId	577049

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:846843..848487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577049	gene_344	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577049	mRNA_344-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_344	CDS_344	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:846843..848487+
coding sequence from alignment at scaffold_3:846843..848487+

mRNA sequence

>mRNA_344 ID=mRNA_344|Name=jgi.p|Nanoce1779_2|577049|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp
CAGAAGCATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGA
GCCTCCTCCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCA
CCGACAAGAGGTAAGCCAAGCACCGTTTGTCCTCCTGCCTCCCTCCCACC
CCTAGCAACGGGGGGCAAGCACCCGCCTTCTTTCGCCCTTGTCTCTTATC
CCCTCGTTCACCCAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCC
AGCAGCACAATCGCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGG
TAACGAGGAGGAGGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGG
CATATGGGGGCGACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCG
AGCGTCTCGTCGTGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGT
GACCGCCCGGGTTGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGC
TTGAAGCGTACCTAGATGCATTGCAAGAGTATATGCATGTGCACACGCTT
TTTACCGAAGTACTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCAT
GGAGCGGGTACGAATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAA
GCAAGCAAGAGCAGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTC
GCCGCAGTCTTGCGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAA
GTTGGATCAGGTCTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTG
GATTAGTGCTGTTGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAA
TTGGGGGGAGGAGTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATC
GGTGGTTTTACCGGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGA
GTTTGGTGGAGTATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGG
AGGTGGTTTGGGAGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTA
CAGGCAGACAGGGGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGG
GCATAAGCCTCGCTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAG
GCTTGGTTGCAGGAGTAGAAGAAGACGTGGATGGGAGTCGCGCAGGATTG
GCGTTATTGCCAAATCAACCATGTGCAAAAGTAAAGGGGAAAAAACGCAG
ACAACAGCAATAACAACCACACCATCTTGCCATTCAACGCGAGCTGCGTC
ATCTCCCCCAGGCCTACGCGCCATGCCTACCATGTCAAGTTTTGGCGTCT
CTCTTCTTCCCTTCTTTCAGTACCTCCATTCCAGCCTGTGCCTTTCTCTT
CTATCTGTTCAAAATTAGGCCATTGGATGCCGTTCTTACGAAACGCACAG
AAACCGTGCATGAGTTTTATAAAGATATACTTTCAAGACATCCTCCTATT
CTCCTCCCCCCGTCCCCTTTTCTCCCTCTCACTCTCCTTTTCCTCACTTC
CTCCCTCCCTCCCTCTCCTTCCCCTCCACTACAATCCTGCCTCGGCAGGG
GTCTTAGCATCAATCGACAAGGCATGGATCTGCTGCATCTCGGCC

protein sequence of jgi.p|Nanoce1779_2|577049

>mRNA_344-protein ID=mRNA_344-protein|Name=jgi.p|Nanoce1779_2|577049|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MSTLRRVGAAGLAVSLLLVDVQAFLLSSFRPPTRGKPSTVCPPASLPPLA
TGGKHPPSFALVSYPLVHPGILSAVPIRTRPSSTIASASTMPDVRAYGNE
EEGDIEIAWFEALQAYGGDAKPYDPLLRILSSVSSWKQFRTQVENAWVTA
RVESDGDRGRLIFKLEAYLDALQEYMHVHTLFTEVLMPTANGCDGMFMER
VRMEAFEAAQTAIRSKQEQYLATHVAFWADLAAVLRSQEDIPVGEVAKLD
QVSPLPAPYGQGESGLVLLPMPSLLEWTRDELGGGVEEQVGALLLFSSVV
LPALERVKKEKSRESLVEYASMWGRLWRKAGRWFGSDTESVEFLDDLYRQ
TGGRVETNDDVTRTGISLAGVGRVERKGMEEAWLQE*

mRNA from alignment at scaffold_3:846843..848487+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_344 ID=mRNA_344|Name=jgi.p|Nanoce1779_2|577049|organism=Nannochloropsis oceanica|type=mRNA|length=1645bp|location=Sequence derived from alignment at scaffold_3:846843..848487+ (Nannochloropsis oceanica)
CAGAAGCATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGA
GCCTCCTCCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCA
CCGACAAGAGGTAAGCCAAGCACCGTTTGTCCTCCTGCCTCCCTCCCACC
CCTAGCAACGGGGGGCAAGCACCCGCCTTCTTTCGCCCTTGTCTCTTATC
CCCTCGTTCACCCAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCC
AGCAGCACAATCGCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGG
TAACGAGGAGGAGGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGG
CATATGGGGGCGACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCG
AGCGTCTCGTCGTGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGT
GACCGCCCGGGTTGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGC
TTGAAGCGTACCTAGATGCATTGCAAGAGTATATGCATGTGCACACGCTT
TTTACCGAAGTACTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCAT
GGAGCGGGTACGAATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAA
GCAAGCAAGAGCAGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTC
GCCGCAGTCTTGCGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAA
GTTGGATCAGGTCTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTG
GATTAGTGCTGTTGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAA
TTGGGGGGAGGAGTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATC
GGTGGTTTTACCGGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGA
GTTTGGTGGAGTATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGG
AGGTGGTTTGGGAGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTA
CAGGCAGACAGGGGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGG
GCATAAGCCTCGCTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAG
GCTTGGTTGCAGGAGTAGAAGAAGACGTGGATGGGAGTCGCGCAGGATTG
GCGTTATTGCCAAATCAACCATGTGCAAAAGTAAAGGGGAAAAAACGCAG
ACAACAGCAATAACAACCACACCATCTTGCCATTCAACGCGAGCTGCGTC
ATCTCCCCCAGGCCTACGCGCCATGCCTACCATGTCAAGTTTTGGCGTCT
CTCTTCTTCCCTTCTTTCAGTACCTCCATTCCAGCCTGTGCCTTTCTCTT
CTATCTGTTCAAAATTAGGCCATTGGATGCCGTTCTTACGAAACGCACAG
AAACCGTGCATGAGTTTTATAAAGATATACTTTCAAGACATCCTCCTATT
CTCCTCCCCCCGTCCCCTTTTCTCCCTCTCACTCTCCTTTTCCTCACTTC
CTCCCTCCCTCCCTCTCCTTCCCCTCCACTACAATCCTGCCTCGGCAGGG
GTCTTAGCATCAATCGACAAGGCATGGATCTGCTGCATCTCGGCC

Coding sequence (CDS) from alignment at scaffold_3:846843..848487+

>mRNA_344 ID=mRNA_344|Name=jgi.p|Nanoce1779_2|577049|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at scaffold_3:846843..848487+ (Nannochloropsis oceanica)
ATGTCGACCCTGCGGCGTGTAGGAGCGGCGGGCCTCGCTGTGAGCCTCCT
CCTCGTTGACGTTCAAGCTTTCCTCCTTTCCTCCTTCAGGCCACCGACAA
GAGGTAAGCCAAGCACCGTTTGTCCTCCTGCCTCCCTCCCACCCCTAGCA
ACGGGGGGCAAGCACCCGCCTTCTTTCGCCCTTGTCTCTTATCCCCTCGT
TCACCCAGGCATTCTATCAGCCGTTCCTATCCGCACGCGGCCCAGCAGCA
CAATCGCCTCCGCCAGCACCATGCCGGACGTCCGGGCGTACGGTAACGAG
GAGGAGGGAGATATCGAGATCGCATGGTTCGAGGCACTGCAGGCATATGG
GGGCGACGCCAAACCGTATGACCCTCTGCTGAGGATCTTGTCGAGCGTCT
CGTCGTGGAAGCAATTCCGGACCCAGGTCGAGAACGCATGGGTGACCGCC
CGGGTTGAAAGTGACGGAGACAGAGGCCGCCTCATCTTTAAGCTTGAAGC
GTACCTAGATGCATTGCAAGAGTATATGCATGTGCACACGCTTTTTACCG
AAGTACTTATGCCGACGGCCAACGGGTGCGACGGCATGTTCATGGAGCGG
GTACGAATGGAGGCATTCGAGGCCGCACAGACTGCGATCCGAAGCAAGCA
AGAGCAGTACCTTGCCACGCACGTTGCCTTTTGGGCGGACCTCGCCGCAG
TCTTGCGCTCGCAAGAGGATATTCCCGTTGGGGAAGTGGCAAAGTTGGAT
CAGGTCTCCCCATTGCCTGCTCCGTACGGGCAGGGGGAGAGTGGATTAGT
GCTGTTGCCGATGCCTTCTCTGTTGGAATGGACGCGTGATGAATTGGGGG
GAGGAGTAGAGGAACAGGTGGGTGCCCTGTTGTTGTTTTCATCGGTGGTT
TTACCGGCGTTGGAGAGGGTCAAGAAGGAGAAGAGTAGGGAGAGTTTGGT
GGAGTATGCGTCAATGTGGGGGAGGCTGTGGAGGAAGGCTGGGAGGTGGT
TTGGGAGCGATACTGAATCGGTGGAGTTCTTGGATGACCTTTACAGGCAG
ACAGGGGGGAGGGTGGAGACGAACGATGATGTGACAAGGACGGGCATAAG
CCTCGCTGGTGTTGGCAGGGTAGAGAGGAAGGGGATGGAGGAGGCTTGGT
TGCAGGAGTAG

Synonyms

Publications