jgi.p|Nanoce1779_2|582126, mRNA_3439 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582126
Unique NamemRNA_3439
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1717
Alignment locationscaffold_6:329452..331168 -

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Properties
Property NameValue
TranscriptId582212
TrackFilteredModels2
ProteinId582126
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:329452..331168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582126gene_3439Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582126mRNA_3439-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3439CDS_3439Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Nanoce1779_2|582126|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
GTGGTCACCGGCGTCCATCTCTACTTCACTGCAGAGGGCTTTTCCGCTTC
TTCCTTGGCACACCCTTCTTCTTTCGAGGGAAAATCAGACGACGCTCAGT
ATAGGAGCGGTAGCAAGGGGGAAGATCAAGGGCAAGGGCTGGCGCACAAA
GACAAGCACGAGGCCAGGCCCCATCCAAGCAGCAGATTTCCCTTTCTACT
TGCGGTCTCCTTCTTCAAGAACGCCGATAACAGCATCAGCATAAGGCGGC
TTTCCGCTTTGGTGATATTGGGTCTACTCTATGTGTCTGCTACGAACAAT
GCTTCTGTCATTCTGGCTACCAAAGGCTTGATGGAGGGAAGCAAGGCTGA
GGGCAAGATGTTTGCGGCCAAAGCTATGACCCAAGAGGGCGACGTGGACC
AAATGGTGGTCGATGAAGTAGGAGCAGCGGGGCTTCTGATAGAGTCAGCG
AAGAAAATTGAGGTGGAGGGTGAGGACAAGGCCGTGCTCCTGACATCGCC
GGAAGCTCTGTCGTCGGTACAGTTATCAAACGAGGCAGGGGCGGAGGAAG
GGCAGGGTGCGGTGTCAGCAGTCTCCACGGCCTCCATCGGCGGGATGTCC
GAGGAACTGCGTCAGAGCTACTTTAATTCATTCTTGGATGAGTTGACTTC
GTCAGACGATGGATTGCTCAAAGCTGCGGCTGTCACTCTGGCCCGGAAGA
CGAAAAGCGGGACATGCAATTTGGAGAAGGATAGAGTGCCCGATCCATGG
AACCCAAACGATGGGGTCCGCCGGGACATCGGCCTATGCATCGAGATCAA
ATCTGACGCGGGCATCCTTGACGAGCATATTGCTTTTCACTGGGCGCAAG
GCGTAAGGAAGTTCATTATTTACGACGATGGCTCGGACGACAATCCTTGG
TCGGTTTTGGAGAAATATGTGGCTCTTGGCATCGTTGAATACCACGACTT
GGCTGGTCATAGGCAAGCAAGCTCCGACGCACTTCAGCTGAAAGTACTGA
ACGAGTGCTTTACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGGATACGG
TGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGTTCCCGG
CGAGACCTTGTCCGACACACTCAACGCCAAGTACAAAGGAGAGGCGTGCT
TGCAAGTCGCGCGGACATGGTATGGATCGTCGTTTCGCCATCAAAAGCCC
GTGGGGTTAGTCACCGAGACATATTTACTTGCGTCTCCCGACAACGCCGA
TGGTATGCCTAAATTGATTGCGAACATTCACCCGGAGAACAGGACTAGCA
ACGCCACAGCGCTGTCCTCGGTCCATGATTTTGTGAATCAAACTGTGATT
CCTTGTGTACTCAAGAAGGATGTTAAGGACGTGCGGATCAACCATTATTT
GAGAAGTTTGGAAGAGTACGATAAAAAGGCTTTGACTGTCAATAACCAGA
ACGAGAAATATAAAGACCCGTTGAAGAAGTTTTTTAAACGGGACTGGAAT
ACGCATTTGAGTCTCACTGCGTCGGCTTATGCGTGCCAGGTCCATGCTTT
GTTGATACAGGTGCAGGAAATGCAGAGTGCGGGGAAGATCCCAGCGGTGG
TAAGGCCAAAGGCATGGAACGAGACTCATACAAGGTAGGATATGAACTGA
ATGGGTAGAAATTGAAAGCTGATGTATGAATTGAAACAAAAGCCAAAACG
ACAAATATTACAGTGGC
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protein sequence of jgi.p|Nanoce1779_2|582126

>mRNA_3439-protein ID=mRNA_3439-protein|Name=jgi.p|Nanoce1779_2|582126|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MEGSKAEGKMFAAKAMTQEGDVDQMVVDEVGAAGLLIESAKKIEVEGEDK
AVLLTSPEALSSVQLSNEAGAEEGQGAVSAVSTASIGGMSEELRQSYFNS
FLDELTSSDDGLLKAAAVTLARKTKSGTCNLEKDRVPDPWNPNDGVRRDI
GLCIEIKSDAGILDEHIAFHWAQGVRKFIIYDDGSDDNPWSVLEKYVALG
IVEYHDLAGHRQASSDALQLKVLNECFTTFRERGPEEGIRWVMFTDLDEF
VLSSVPGETLSDTLNAKYKGEACLQVARTWYGSSFRHQKPVGLVTETYLL
ASPDNADGMPKLIANIHPENRTSNATALSSVHDFVNQTVIPCVLKKDVKD
VRINHYLRSLEEYDKKALTVNNQNEKYKDPLKKFFKRDWNTHLSLTASAY
ACQVHALLIQVQEMQSAGKIPAVVRPKAWNETHTR*
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mRNA from alignment at scaffold_6:329452..331168-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Nanoce1779_2|582126|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at scaffold_6:329452..331168- (Nannochloropsis oceanica)
GTGGTCACCGGCGTCCATCTCTACTTCACTGCAGAGGGCTTTTCCGCTTC
TTCCTTGGCACACCCTTCTTCTTTCGAGGGAAAATCAGACGACGCTCAGT
ATAGGAGCGGTAGCAAGGGGGAAGATCAAGGGCAAGGGCTGGCGCACAAA
GACAAGCACGAGGCCAGGCCCCATCCAAGCAGCAGATTTCCCTTTCTACT
TGCGGTCTCCTTCTTCAAGAACGCCGATAACAGCATCAGCATAAGGCGGC
TTTCCGCTTTGGTGATATTGGGTCTACTCTATGTGTCTGCTACGAACAAT
GCTTCTGTCATTCTGGCTACCAAAGGCTTGATGGAGGGAAGCAAGGCTGA
GGGCAAGATGTTTGCGGCCAAAGCTATGACCCAAGAGGGCGACGTGGACC
AAATGGTGGTCGATGAAGTAGGAGCAGCGGGGCTTCTGATAGAGTCAGCG
AAGAAAATTGAGGTGGAGGGTGAGGACAAGGCCGTGCTCCTGACATCGCC
GGAAGCTCTGTCGTCGGTACAGTTATCAAACGAGGCAGGGGCGGAGGAAG
GGCAGGGTGCGGTGTCAGCAGTCTCCACGGCCTCCATCGGCGGGATGTCC
GAGGAACTGCGTCAGAGCTACTTTAATTCATTCTTGGATGAGTTGACTTC
GTCAGACGATGGATTGCTCAAAGCTGCGGCTGTCACTCTGGCCCGGAAGA
CGAAAAGCGGGACATGCAATTTGGAGAAGGATAGAGTGCCCGATCCATGG
AACCCAAACGATGGGGTCCGCCGGGACATCGGCCTATGCATCGAGATCAA
ATCTGACGCGGGCATCCTTGACGAGCATATTGCTTTTCACTGGGCGCAAG
GCGTAAGGAAGTTCATTATTTACGACGATGGCTCGGACGACAATCCTTGG
TCGGTTTTGGAGAAATATGTGGCTCTTGGCATCGTTGAATACCACGACTT
GGCTGGTCATAGGCAAGCAAGCTCCGACGCACTTCAGCTGAAAGTACTGA
ACGAGTGCTTTACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGGATACGG
TGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGTTCCCGG
CGAGACCTTGTCCGACACACTCAACGCCAAGTACAAAGGAGAGGCGTGCT
TGCAAGTCGCGCGGACATGGTATGGATCGTCGTTTCGCCATCAAAAGCCC
GTGGGGTTAGTCACCGAGACATATTTACTTGCGTCTCCCGACAACGCCGA
TGGTATGCCTAAATTGATTGCGAACATTCACCCGGAGAACAGGACTAGCA
ACGCCACAGCGCTGTCCTCGGTCCATGATTTTGTGAATCAAACTGTGATT
CCTTGTGTACTCAAGAAGGATGTTAAGGACGTGCGGATCAACCATTATTT
GAGAAGTTTGGAAGAGTACGATAAAAAGGCTTTGACTGTCAATAACCAGA
ACGAGAAATATAAAGACCCGTTGAAGAAGTTTTTTAAACGGGACTGGAAT
ACGCATTTGAGTCTCACTGCGTCGGCTTATGCGTGCCAGGTCCATGCTTT
GTTGATACAGGTGCAGGAAATGCAGAGTGCGGGGAAGATCCCAGCGGTGG
TAAGGCCAAAGGCATGGAACGAGACTCATACAAGGTAGGATATGAACTGA
ATGGGTAGAAATTGAAAGCTGATGTATGAATTGAAACAAAAGCCAAAACG
ACAAATATTACAGTGGC
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Coding sequence (CDS) from alignment at scaffold_6:329452..331168-

>mRNA_3439 ID=mRNA_3439|Name=jgi.p|Nanoce1779_2|582126|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at scaffold_6:329452..331168- (Nannochloropsis oceanica)
ATGGAGGGAAGCAAGGCTGAGGGCAAGATGTTTGCGGCCAAAGCTATGAC
CCAAGAGGGCGACGTGGACCAAATGGTGGTCGATGAAGTAGGAGCAGCGG
GGCTTCTGATAGAGTCAGCGAAGAAAATTGAGGTGGAGGGTGAGGACAAG
GCCGTGCTCCTGACATCGCCGGAAGCTCTGTCGTCGGTACAGTTATCAAA
CGAGGCAGGGGCGGAGGAAGGGCAGGGTGCGGTGTCAGCAGTCTCCACGG
CCTCCATCGGCGGGATGTCCGAGGAACTGCGTCAGAGCTACTTTAATTCA
TTCTTGGATGAGTTGACTTCGTCAGACGATGGATTGCTCAAAGCTGCGGC
TGTCACTCTGGCCCGGAAGACGAAAAGCGGGACATGCAATTTGGAGAAGG
ATAGAGTGCCCGATCCATGGAACCCAAACGATGGGGTCCGCCGGGACATC
GGCCTATGCATCGAGATCAAATCTGACGCGGGCATCCTTGACGAGCATAT
TGCTTTTCACTGGGCGCAAGGCGTAAGGAAGTTCATTATTTACGACGATG
GCTCGGACGACAATCCTTGGTCGGTTTTGGAGAAATATGTGGCTCTTGGC
ATCGTTGAATACCACGACTTGGCTGGTCATAGGCAAGCAAGCTCCGACGC
ACTTCAGCTGAAAGTACTGAACGAGTGCTTTACAACGTTTCGGGAGCGCG
GGCCAGAGGAGGGGATACGGTGGGTCATGTTTACTGACCTGGACGAATTT
GTCTTGTCATCCGTTCCCGGCGAGACCTTGTCCGACACACTCAACGCCAA
GTACAAAGGAGAGGCGTGCTTGCAAGTCGCGCGGACATGGTATGGATCGT
CGTTTCGCCATCAAAAGCCCGTGGGGTTAGTCACCGAGACATATTTACTT
GCGTCTCCCGACAACGCCGATGGTATGCCTAAATTGATTGCGAACATTCA
CCCGGAGAACAGGACTAGCAACGCCACAGCGCTGTCCTCGGTCCATGATT
TTGTGAATCAAACTGTGATTCCTTGTGTACTCAAGAAGGATGTTAAGGAC
GTGCGGATCAACCATTATTTGAGAAGTTTGGAAGAGTACGATAAAAAGGC
TTTGACTGTCAATAACCAGAACGAGAAATATAAAGACCCGTTGAAGAAGT
TTTTTAAACGGGACTGGAATACGCATTTGAGTCTCACTGCGTCGGCTTAT
GCGTGCCAGGTCCATGCTTTGTTGATACAGGTGCAGGAAATGCAGAGTGC
GGGGAAGATCCCAGCGGTGGTAAGGCCAAAGGCATGGAACGAGACTCATA
CAAGGTAG
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Synonyms
Publications