jgi.p|Nanoce1779_2|564370, mRNA_3436 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564370
Unique NamemRNA_3436
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length393
Alignment locationscaffold_6:319553..320234 -

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Properties
Property NameValue
TranscriptId564456
TrackFilteredModels2
ProteinId564370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:319553..320234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564370gene_3436Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564370mRNA_3436-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3436CDS_3436Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3436 ID=mRNA_3436|Name=jgi.p|Nanoce1779_2|564370|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGGCTGATGCTCCGAGCAGCAGCTGCAGCTGCGGTAGCGGCAGCGGCGG
CCCGGGCAGAGGCAGTTGCCGCATGGATATGTTGCTATGGAGGCTTCTCG
ACGTCTATCCAGGGGGACAAGGAACACAAACGGAAGTGACAAGGCCTGTG
CATCAAAGGCCGATCCTGGGTGGTCGGATCCTGTGGTGGTATGGTGGTGG
TATTGGTATTTTGGTATTGTGGTTGTCGATTAGGCATGGGCAGGGGTTAT
GTTTCTTTTGCCGCGGTCTCTGCACCCGGCGCCTCGCGCGCCAAGGACAG
CTAGACCACCTCCGCATGTCGCAGGGTGGATGGATCATGTGCCTCGATTC
AATTTCGGGCAGTGGAACCGGAAGGATCGCGGGGCTCATTTGA
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protein sequence of jgi.p|Nanoce1779_2|564370

>mRNA_3436-protein ID=mRNA_3436-protein|Name=jgi.p|Nanoce1779_2|564370|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MADAPSSSCSCGSGSGGPGRGSCRMDMLLWRLLDVYPGGQGTQTEVTRPV
HQRPILGGRILWWYGGGIGILVLWLSIRHGQGLCFFCRGLCTRRLARQGQ
LDHLRMSQGGWIMCLDSISGSGTGRIAGLI*
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mRNA from alignment at scaffold_6:319553..320234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3436 ID=mRNA_3436|Name=jgi.p|Nanoce1779_2|564370|organism=Nannochloropsis oceanica|type=mRNA|length=682bp|location=Sequence derived from alignment at scaffold_6:319553..320234- (Nannochloropsis oceanica)
ATGGCTGATGCTCCGAGCAGCAGCTGCAGCTGCGGTAGCGGCAGCGGCGG
CCCGGGCAGAGGCAGTTGCCGCATGGATATGTTGGTGAGAGGGGGTGGAT
GCGGAGGAGGAAGACATAGTGATTAGAGAAATGTGTCTTTGTGCGTGTGA
AGTGTGAAGAAGTTGGCGGGTAATACTGCTGGTGCTGCTTCAGACTGCTG
CTACAGACTGATACCACGACAAAAGCCCTTTTAAAGTTTCCTGTTGGATG
TCACCTCTGGTTCACTACTACTTCAGCTGCTTTTGCTGGTGCTGCTGCTT
CTCTTTTCCGTATCTGAGAGCTTAGTGTCAGGTGCCGGCTCGTATTGTCT
GCTTGTCTACCGTGTGGCCTTAGCTATGGAGGCTTCTCGACGTCTATCCA
GGGGGACAAGGAACACAAACGGAAGTGACAAGGCCTGTGCATCAAAGGCC
GATCCTGGGTGGTCGGATCCTGTGGTGGTATGGTGGTGGTATTGGTATTT
TGGTATTGTGGTTGTCGATTAGGCATGGGCAGGGGTTATGTTTCTTTTGC
CGCGGTCTCTGCACCCGGCGCCTCGCGCGCCAAGGACAGCTAGACCACCT
CCGCATGTCGCAGGGTGGATGGATCATGTGCCTCGATTCAATTTCGGGCA
GTGGAACCGGAAGGATCGCGGGGCTCATTTGA
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Coding sequence (CDS) from alignment at scaffold_6:319553..320234-

>mRNA_3436 ID=mRNA_3436|Name=jgi.p|Nanoce1779_2|564370|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_6:319553..320234- (Nannochloropsis oceanica)
CTATGGAGGCTTCTCGACGTCTATCCAGGGGGACAAGGAACACAAACGGA
AGTGACAAGGCCTGTGCATCAAAGGCCGATCCTGGGTGGTCGGATCCTGT
GGTGGTATGGTGGTGGTATTGGTATTTTGGTATTGTGGTTGTCGATTAGG
CATGGGCAGGGGTTATGTTTCTTTTGCCGCGGTCTCTGCACCCGGCGCCT
CGCGCGCCAAGGACAGCTAGACCACCTCCGCATGTCGCAGGGTGGATGGA
TCATGTGCCTCGATTCAATTTCGGGCAGTGGAACCGGAAGGATCGCGGGG
CTCATTTGAATGGCTGATGCTCCGAGCAGCAGCTGCAGCTGCGGTAGCGG
CAGCGGCGGCCCGGGCAGAGGCAGTTGCCGCATGGATATGTTGCTATGGA
GGCTTCTCGACGTCTATCCAGGGGGACAAGGAACACAAACGGAAGTGACA
AGGCCTGTGCATCAAAGGCCGATCCTGGGTGGTCGGATCCTGTGGTGGTA
TGGTGGTGGTATTGGTATTTTGGTATTGTGGTTGTCGATTAGGCATGGGC
AGGGGTTATGTTTCTTTTGCCGCGGTCTCTGCACCCGGCGCCTCGCGCGC
CAAGGACAGCTAGACCACCTCCGCATGTCGCAGGGTGGATGGATCATGTG
CCTCGATTCAATTTCGGGCAGTGGAACCGGAAGGATCGCGGGGCTCATTT
GAATGGCTGATGCTCCGAGCAGCAGCTGCAGCTGCGGTAGCGGCAGCGGC
GGCCCGGGCAGAGGCAGTTGCCGCATGGATATGTTG
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Synonyms
Publications