jgi.p|Nanoce1779_2|582106, mRNA_3433 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582106
Unique NamemRNA_3433
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length970
Alignment locationscaffold_6:312577..313546 -

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Properties
Property NameValue
TranscriptId582192
TrackFilteredModels2
ProteinId582106
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:312577..313546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582106gene_3433Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582106mRNA_3433-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3433CDS_3433Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3433 ID=mRNA_3433|Name=jgi.p|Nanoce1779_2|582106|organism=Nannochloropsis oceanica|type=mRNA|length=970bp
CGAAAAAGAGGAGGAAGTTTCTAGATCCGTGACTCAGCTAAATAATTGGT
TATGTTTCTTCTTGCTTTTTGGTGGTGTCGTGCATTTTAGAATCACACCC
TGGCGCATGCTCATTCGAACCTCGTCAACGCATGCACTCAGATACAGGCG
AACAACTTTTCATGCCGTTCAACCTCATCACCAAGGTCCACTTGACGCAG
CTCCTGGCCGTGAGCACCATACTCTCTGGCACGACCTTTATCGGCGTGCG
AGCCTTTGCCAAACCTGCCACCATGAGCGCAAGCACTTCCACGAAACCTT
CGTCCACATCGAGCGCCCAGAGCCTCTTCCCCATTCCCCTCCGCAAAGTG
ACAGGGGAAGCTGCTGCTTTGGGCGCCAGCGTGCCGTGCAGCAGCTTGAT
CAAGCCCAATGGCGCCGTCATTTTTGTGGTACGTCGTCCGGGATGCATTT
TGTGCCGCGAAGAAGCCATGGATTTGAGCACCCAACTCGCCCCGCGTCTC
AAGGGCCTGAAGAAGCAACCCCGGCTCATGGCGGTGGTGGCCGAGACAAC
GAGCGTGGACGGTTTCGTCGAGGCGTTCAAGGGGTTCGACACTTTTTTGG
ATGAGGGGCGAATGTTCCAGAAGTTCCTGGGAGATAGGTGGTTGGGTGTG
CAAGGTATGCTCTACCCATCGGTCTGGCGTAATGGCTCGCGGGCCACGAA
GAAGTATCCGACATTGGAGGGCGATCTGAAGGGAGAAGGGCGGCGATTGG
GTGGGTTGTTGGTGGTGGATGGGAAGGGGGATGTGGTGTATCAGTATAAT
GAAAAGGTGTTCGGAGACCATGCACCGATGGATGAAGTGTTTGAAGCGGC
GTCGAAGCTTTGAGGCCTTAATGGTCTTGACGGAGAGGGAGGAAAGGAGG
GAGGGAGGAGGATGTATGTGGATTGTTGTAAGCGCTGGCAGATAAAATTG
TCGATGCTGTACATGTTGGG
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protein sequence of jgi.p|Nanoce1779_2|582106

>mRNA_3433-protein ID=mRNA_3433-protein|Name=jgi.p|Nanoce1779_2|582106|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MHSDTGEQLFMPFNLITKVHLTQLLAVSTILSGTTFIGVRAFAKPATMSA
STSTKPSSTSSAQSLFPIPLRKVTGEAAALGASVPCSSLIKPNGAVIFVV
RRPGCILCREEAMDLSTQLAPRLKGLKKQPRLMAVVAETTSVDGFVEAFK
GFDTFLDEGRMFQKFLGDRWLGVQGMLYPSVWRNGSRATKKYPTLEGDLK
GEGRRLGGLLVVDGKGDVVYQYNEKVFGDHAPMDEVFEAASKL*
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mRNA from alignment at scaffold_6:312577..313546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3433 ID=mRNA_3433|Name=jgi.p|Nanoce1779_2|582106|organism=Nannochloropsis oceanica|type=mRNA|length=970bp|location=Sequence derived from alignment at scaffold_6:312577..313546- (Nannochloropsis oceanica)
CGAAAAAGAGGAGGAAGTTTCTAGATCCGTGACTCAGCTAAATAATTGGT
TATGTTTCTTCTTGCTTTTTGGTGGTGTCGTGCATTTTAGAATCACACCC
TGGCGCATGCTCATTCGAACCTCGTCAACGCATGCACTCAGATACAGGCG
AACAACTTTTCATGCCGTTCAACCTCATCACCAAGGTCCACTTGACGCAG
CTCCTGGCCGTGAGCACCATACTCTCTGGCACGACCTTTATCGGCGTGCG
AGCCTTTGCCAAACCTGCCACCATGAGCGCAAGCACTTCCACGAAACCTT
CGTCCACATCGAGCGCCCAGAGCCTCTTCCCCATTCCCCTCCGCAAAGTG
ACAGGGGAAGCTGCTGCTTTGGGCGCCAGCGTGCCGTGCAGCAGCTTGAT
CAAGCCCAATGGCGCCGTCATTTTTGTGGTACGTCGTCCGGGATGCATTT
TGTGCCGCGAAGAAGCCATGGATTTGAGCACCCAACTCGCCCCGCGTCTC
AAGGGCCTGAAGAAGCAACCCCGGCTCATGGCGGTGGTGGCCGAGACAAC
GAGCGTGGACGGTTTCGTCGAGGCGTTCAAGGGGTTCGACACTTTTTTGG
ATGAGGGGCGAATGTTCCAGAAGTTCCTGGGAGATAGGTGGTTGGGTGTG
CAAGGTATGCTCTACCCATCGGTCTGGCGTAATGGCTCGCGGGCCACGAA
GAAGTATCCGACATTGGAGGGCGATCTGAAGGGAGAAGGGCGGCGATTGG
GTGGGTTGTTGGTGGTGGATGGGAAGGGGGATGTGGTGTATCAGTATAAT
GAAAAGGTGTTCGGAGACCATGCACCGATGGATGAAGTGTTTGAAGCGGC
GTCGAAGCTTTGAGGCCTTAATGGTCTTGACGGAGAGGGAGGAAAGGAGG
GAGGGAGGAGGATGTATGTGGATTGTTGTAAGCGCTGGCAGATAAAATTG
TCGATGCTGTACATGTTGGG
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Coding sequence (CDS) from alignment at scaffold_6:312577..313546-

>mRNA_3433 ID=mRNA_3433|Name=jgi.p|Nanoce1779_2|582106|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_6:312577..313546- (Nannochloropsis oceanica)
ATGCACTCAGATACAGGCGAACAACTTTTCATGCCGTTCAACCTCATCAC
CAAGGTCCACTTGACGCAGCTCCTGGCCGTGAGCACCATACTCTCTGGCA
CGACCTTTATCGGCGTGCGAGCCTTTGCCAAACCTGCCACCATGAGCGCA
AGCACTTCCACGAAACCTTCGTCCACATCGAGCGCCCAGAGCCTCTTCCC
CATTCCCCTCCGCAAAGTGACAGGGGAAGCTGCTGCTTTGGGCGCCAGCG
TGCCGTGCAGCAGCTTGATCAAGCCCAATGGCGCCGTCATTTTTGTGGTA
CGTCGTCCGGGATGCATTTTGTGCCGCGAAGAAGCCATGGATTTGAGCAC
CCAACTCGCCCCGCGTCTCAAGGGCCTGAAGAAGCAACCCCGGCTCATGG
CGGTGGTGGCCGAGACAACGAGCGTGGACGGTTTCGTCGAGGCGTTCAAG
GGGTTCGACACTTTTTTGGATGAGGGGCGAATGTTCCAGAAGTTCCTGGG
AGATAGGTGGTTGGGTGTGCAAGGTATGCTCTACCCATCGGTCTGGCGTA
ATGGCTCGCGGGCCACGAAGAAGTATCCGACATTGGAGGGCGATCTGAAG
GGAGAAGGGCGGCGATTGGGTGGGTTGTTGGTGGTGGATGGGAAGGGGGA
TGTGGTGTATCAGTATAATGAAAAGGTGTTCGGAGACCATGCACCGATGG
ATGAAGTGTTTGAAGCGGCGTCGAAGCTTTGA
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Synonyms
Publications