jgi.p|Nanoce1779_2|582104, mRNA_3432 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582104
Unique Name	mRNA_3432
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3011
Alignment location	scaffold_6:309166..312176 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582190
Track	FilteredModels2
ProteinId	582104

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:309166..312176 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582104	gene_3432	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582104	mRNA_3432-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3432	CDS_3432	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:309166..312176+
coding sequence from alignment at scaffold_6:309166..312176+

mRNA sequence

>mRNA_3432 ID=mRNA_3432|Name=jgi.p|Nanoce1779_2|582104|organism=Nannochloropsis oceanica|type=mRNA|length=3011bp
AGGTTTGTACTTCGGCACCATCGACCTCAGCCAGGCGAGCTGGGGCAAAG
AAATATGTCGGCGAGACGCAGGAGCAATGCGGGAGGAGGAGATAGAGGAG
GACGCAGGAGCAGCCTTGGGGTCGGGGCATCCCCAGCCGCCTCCCCTGCC
GTCCCACAGCGTCGCCTGGGCTTACGTGCCCGTGATTCGGGCGCTTTTGA
CTTGGGCTTGCTACAACTGGACAGCGACGAGAAGGAGGACATCCAGGTAG
CTGATGGTGATGGTGGTGTGCCGCTATTTGCGTTAGACGAGGAGGAGGGG
CAGAATGTCAAGGCAAGCCATATTTTAGGGTCCGTGTTTGTTTTCGCCCT
CTTTAGCATGCTCTGCTACCTCATGCTCTGGAACGTGACTACGGTCAGCA
AGGACTTCACCAATCCCTTGATTACGCGACACGGGCGCAACGGCACGTCA
TCGACAAAGGGTGTGGGGGTACCTGCGGGGGTGGGAGTTGACGGCGCGAT
GCTGCAGGACTGGGCAAGCGACCAAGTGGTGAAAGCACTTATTGAAGAGG
CGCTGTTGAAGCGCATGAATGAACAGGACGCTAAGAACGCAGAATTCCAG
CAGGGTTTGTGGAATGTGACTCAATTGATAGAGAATGTGGCGAAGAAGTC
CGAGTTGTACACGGACACGGGGGCGGCTGCTGGTACTGTAGAGGCTAGCA
ACGTCCGCTCCAAGACCGAATATATCCTCCAAGAGATCGAGTTGCTCAAG
GCACAAATCGCGGCGGGAGAGGAGGAAGATGAGCGACGACTGCGGCATTC
GGGGGAGGAAAGAAATACGGTGATGGAGCGGTACGAGGAGCAGAAACAGA
GCGCAGAGATGGAGGTGAAGAAGCTGCAGGAGAAAGTCAAAATTTTGGAA
GCGGCCATTCAGTTGGACAAAAATCAAACGGCCCTTATGGAAGAAAAGCT
TGCGTCGCTTGCCTATAATATGAGCAGCTACGAGCACACCACCTCTGAGC
AGGTACAAGTTTTGGGGGCAGCAGTGCGTGAGCTTCAGATGGAGGAGAAG
GAGGAGATGCTGAAAGAAGCACGTGCGACTGTCGAGGACATGGTGAAAGA
CTTGACAGCCCACCCCCTGGTGCTTGCAACGGAGCAGGCGCTTGAGGCCA
GGAAGGCTGCGGCAAGTGAGGAGTTCAATTTGTTGATAAAAAATTATGAT
GAGGCGCGTATGGACATGGCCGAGTTGGCGGCTCAGACTGTCACGAGGAT
AGAAGAGATCCGTGCCTTGGGGGCGTTCTCCCTCCCCACCACTGGCAAGA
TAGAGGCAAAGGAAGGGGAGGAGGTGGAGGAGGAGGAAGGCGGCGAAGAG
AGCAAAGGAGCGGAAGCAGCAGCACTGACAGGGGATACAATGAGGGAATT
GAAGGAGGCGAGGGAAAGTGCCAAGAGGGCTGCTGAGACCATCGCGGCAC
AGAAAGAAGAGTTAAGCGTGGACATAGAGTTGGCAAAGAATGTCCGCGCT
GAGCTTGCTGCCGCTCTTACTGCTGCTGCTGCAGCTGGGGCTGATGGTGC
TGCTGGTACCTGTAGTGGTGGTGGTGGTGGTAATGAATGGTCAGAGGAAA
TGCGTGCGAAGATTCAGTGGCTGGAGGCGCTGGAGGTGGAGAATGAGCAG
GCGAGGATAAATACACAGCACAATTTAGAAATGTTCGAGGAGCTCAAAAT
GGGTCTGTTGCGGATACAAGCCGAAAGGGAGGCTGACGCAAGGATTCCCG
GAGCAGCAAGAGGAGCAGAGGATGGAGCAGCAGTAGGTGCAGTAGTTGCA
GCAGCAGCAGGAAGAGCGCTGACAGAAGAGAATGCGTTGGCCATTGTTCG
GGACGAAATAGAAAAGGCCGAGGAGCGTATTAAAACCTTGATCATGGTGA
TGGAAAAAGAGGGAGGAGGAGCGGCAACTGTACCACCTGGGAGACCGACA
TTCCAAGAACTCGAAGGCCTCATGGAGTCCAGGATTGGGCCCCTGGAAAC
AAGCGTGCGACGCGTCAAGGAAGACCTTCGTCTCCTCTATGCCGATAATA
CAGACATGATTGATTATGCTGCCGACGCCTCGGGCGGGAAGATCGTGCCC
CACCTGTCCTCCGCAACCTACTCCAGCCCTCACCAACTCGTCGCCACTGA
CGTCCTCCACTCCTTCGGTGCCAATGCACACATCGGCAAACGCGACGGTG
TCATCAAGCCAGGCGCAAAAACCCTAGGCGATTGCTGGCCCTTGCAGGGC
AGGAGTGGTTCCCTGACCGTGCAGCTGAAAACCCCCCTCAATATCAGTCA
TGTCTCGGTCGAGCACGTTGCAAGAAGCGTGACCAAATACCCTGGGACGG
CCCCGAGGAGTTTCCGGGTGTTGGGAAGAAAGAGCACACATGTGGCCGAG
CAGCCTCTGTTATTGCACAGTCAGAAGAATTTCGTCTACGATATTTACTC
CGAGAGGCTTGTGCAGACGTTCGCGTTGGACCGGGGACTGGACGGAGGGA
AGGAGGAAGGGGAAGAGGAAGGGTTTGGTGTGGTGACTCTTGAGGTATTG
GATAATTGGGGAAATAATGACTACACGTGTTTATACCGGCTGAGGGTGCA
TGGAGTGCCGGTGGGACAGGAAGAGGGAGGCTTCGGGGAAGTGCTTGAGG
AGGGAGGGGTGGAGGTTGTGGTTGAGGAGGGGCAGCAGCCGCTAGCACAC
CAGCAGCATCACCAGTAGCACCGCCATGACGACCACCAGCAGCAGCAGCA
ATTGCGTCAGCAGCAGCAGAAAGGAGAAAATGAGAGATGGTAAGGAAGAA
GTAGAAAATGAAGAAGAACAGTGTGTACATTGTGTATTTGAATTAAGAAG
CGGAGTTGCTGATAAAATGATGCTCGGGCAGACAGAGTGGGCAAGATAGA
TGGGAGAACTAAAAAAACAGAAAAGCCAGTGCCTTTAAAAAAAAAAGAGT
GATAGAGGAGGAGAGAGCAGTACGTGGAGAAAGTTTGAACAACAACAACA
ACAACAACAAC

protein sequence of jgi.p|Nanoce1779_2|582104

>mRNA_3432-protein ID=mRNA_3432-protein|Name=jgi.p|Nanoce1779_2|582104|organism=Nannochloropsis oceanica|type=polypeptide|length=888bp
MSARRRSNAGGGDRGGRRSSLGVGASPAASPAVPQRRLGLRARDSGAFDL
GLLQLDSDEKEDIQVADGDGGVPLFALDEEEGQNVKASHILGSVFVFALF
SMLCYLMLWNVTTVSKDFTNPLITRHGRNGTSSTKGVGVPAGVGVDGAML
QDWASDQVVKALIEEALLKRMNEQDAKNAEFQQGLWNVTQLIENVAKKSE
LYTDTGAAAGTVEASNVRSKTEYILQEIELLKAQIAAGEEEDERRLRHSG
EERNTVMERYEEQKQSAEMEVKKLQEKVKILEAAIQLDKNQTALMEEKLA
SLAYNMSSYEHTTSEQVQVLGAAVRELQMEEKEEMLKEARATVEDMVKDL
TAHPLVLATEQALEARKAAASEEFNLLIKNYDEARMDMAELAAQTVTRIE
EIRALGAFSLPTTGKIEAKEGEEVEEEEGGEESKGAEAAALTGDTMRELK
EARESAKRAAETIAAQKEELSVDIELAKNVRAELAAALTAAAAAGADGAA
GTCSGGGGGNEWSEEMRAKIQWLEALEVENEQARINTQHNLEMFEELKMG
LLRIQAEREADARIPGAARGAEDGAAVGAVVAAAAGRALTEENALAIVRD
EIEKAEERIKTLIMVMEKEGGGAATVPPGRPTFQELEGLMESRIGPLETS
VRRVKEDLRLLYADNTDMIDYAADASGGKIVPHLSSATYSSPHQLVATDV
LHSFGANAHIGKRDGVIKPGAKTLGDCWPLQGRSGSLTVQLKTPLNISHV
SVEHVARSVTKYPGTAPRSFRVLGRKSTHVAEQPLLLHSQKNFVYDIYSE
RLVQTFALDRGLDGGKEEGEEEGFGVVTLEVLDNWGNNDYTCLYRLRVHG
VPVGQEEGGFGEVLEEGGVEVVVEEGQQPLAHQQHHQ*

mRNA from alignment at scaffold_6:309166..312176+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3432 ID=mRNA_3432|Name=jgi.p|Nanoce1779_2|582104|organism=Nannochloropsis oceanica|type=mRNA|length=3011bp|location=Sequence derived from alignment at scaffold_6:309166..312176+ (Nannochloropsis oceanica)
AGGTTTGTACTTCGGCACCATCGACCTCAGCCAGGCGAGCTGGGGCAAAG
AAATATGTCGGCGAGACGCAGGAGCAATGCGGGAGGAGGAGATAGAGGAG
GACGCAGGAGCAGCCTTGGGGTCGGGGCATCCCCAGCCGCCTCCCCTGCC
GTCCCACAGCGTCGCCTGGGCTTACGTGCCCGTGATTCGGGCGCTTTTGA
CTTGGGCTTGCTACAACTGGACAGCGACGAGAAGGAGGACATCCAGGTAG
CTGATGGTGATGGTGGTGTGCCGCTATTTGCGTTAGACGAGGAGGAGGGG
CAGAATGTCAAGGCAAGCCATATTTTAGGGTCCGTGTTTGTTTTCGCCCT
CTTTAGCATGCTCTGCTACCTCATGCTCTGGAACGTGACTACGGTCAGCA
AGGACTTCACCAATCCCTTGATTACGCGACACGGGCGCAACGGCACGTCA
TCGACAAAGGGTGTGGGGGTACCTGCGGGGGTGGGAGTTGACGGCGCGAT
GCTGCAGGACTGGGCAAGCGACCAAGTGGTGAAAGCACTTATTGAAGAGG
CGCTGTTGAAGCGCATGAATGAACAGGACGCTAAGAACGCAGAATTCCAG
CAGGGTTTGTGGAATGTGACTCAATTGATAGAGAATGTGGCGAAGAAGTC
CGAGTTGTACACGGACACGGGGGCGGCTGCTGGTACTGTAGAGGCTAGCA
ACGTCCGCTCCAAGACCGAATATATCCTCCAAGAGATCGAGTTGCTCAAG
GCACAAATCGCGGCGGGAGAGGAGGAAGATGAGCGACGACTGCGGCATTC
GGGGGAGGAAAGAAATACGGTGATGGAGCGGTACGAGGAGCAGAAACAGA
GCGCAGAGATGGAGGTGAAGAAGCTGCAGGAGAAAGTCAAAATTTTGGAA
GCGGCCATTCAGTTGGACAAAAATCAAACGGCCCTTATGGAAGAAAAGCT
TGCGTCGCTTGCCTATAATATGAGCAGCTACGAGCACACCACCTCTGAGC
AGGTACAAGTTTTGGGGGCAGCAGTGCGTGAGCTTCAGATGGAGGAGAAG
GAGGAGATGCTGAAAGAAGCACGTGCGACTGTCGAGGACATGGTGAAAGA
CTTGACAGCCCACCCCCTGGTGCTTGCAACGGAGCAGGCGCTTGAGGCCA
GGAAGGCTGCGGCAAGTGAGGAGTTCAATTTGTTGATAAAAAATTATGAT
GAGGCGCGTATGGACATGGCCGAGTTGGCGGCTCAGACTGTCACGAGGAT
AGAAGAGATCCGTGCCTTGGGGGCGTTCTCCCTCCCCACCACTGGCAAGA
TAGAGGCAAAGGAAGGGGAGGAGGTGGAGGAGGAGGAAGGCGGCGAAGAG
AGCAAAGGAGCGGAAGCAGCAGCACTGACAGGGGATACAATGAGGGAATT
GAAGGAGGCGAGGGAAAGTGCCAAGAGGGCTGCTGAGACCATCGCGGCAC
AGAAAGAAGAGTTAAGCGTGGACATAGAGTTGGCAAAGAATGTCCGCGCT
GAGCTTGCTGCCGCTCTTACTGCTGCTGCTGCAGCTGGGGCTGATGGTGC
TGCTGGTACCTGTAGTGGTGGTGGTGGTGGTAATGAATGGTCAGAGGAAA
TGCGTGCGAAGATTCAGTGGCTGGAGGCGCTGGAGGTGGAGAATGAGCAG
GCGAGGATAAATACACAGCACAATTTAGAAATGTTCGAGGAGCTCAAAAT
GGGTCTGTTGCGGATACAAGCCGAAAGGGAGGCTGACGCAAGGATTCCCG
GAGCAGCAAGAGGAGCAGAGGATGGAGCAGCAGTAGGTGCAGTAGTTGCA
GCAGCAGCAGGAAGAGCGCTGACAGAAGAGAATGCGTTGGCCATTGTTCG
GGACGAAATAGAAAAGGCCGAGGAGCGTATTAAAACCTTGATCATGGTGA
TGGAAAAAGAGGGAGGAGGAGCGGCAACTGTACCACCTGGGAGACCGACA
TTCCAAGAACTCGAAGGCCTCATGGAGTCCAGGATTGGGCCCCTGGAAAC
AAGCGTGCGACGCGTCAAGGAAGACCTTCGTCTCCTCTATGCCGATAATA
CAGACATGATTGATTATGCTGCCGACGCCTCGGGCGGGAAGATCGTGCCC
CACCTGTCCTCCGCAACCTACTCCAGCCCTCACCAACTCGTCGCCACTGA
CGTCCTCCACTCCTTCGGTGCCAATGCACACATCGGCAAACGCGACGGTG
TCATCAAGCCAGGCGCAAAAACCCTAGGCGATTGCTGGCCCTTGCAGGGC
AGGAGTGGTTCCCTGACCGTGCAGCTGAAAACCCCCCTCAATATCAGTCA
TGTCTCGGTCGAGCACGTTGCAAGAAGCGTGACCAAATACCCTGGGACGG
CCCCGAGGAGTTTCCGGGTGTTGGGAAGAAAGAGCACACATGTGGCCGAG
CAGCCTCTGTTATTGCACAGTCAGAAGAATTTCGTCTACGATATTTACTC
CGAGAGGCTTGTGCAGACGTTCGCGTTGGACCGGGGACTGGACGGAGGGA
AGGAGGAAGGGGAAGAGGAAGGGTTTGGTGTGGTGACTCTTGAGGTATTG
GATAATTGGGGAAATAATGACTACACGTGTTTATACCGGCTGAGGGTGCA
TGGAGTGCCGGTGGGACAGGAAGAGGGAGGCTTCGGGGAAGTGCTTGAGG
AGGGAGGGGTGGAGGTTGTGGTTGAGGAGGGGCAGCAGCCGCTAGCACAC
CAGCAGCATCACCAGTAGCACCGCCATGACGACCACCAGCAGCAGCAGCA
ATTGCGTCAGCAGCAGCAGAAAGGAGAAAATGAGAGATGGTAAGGAAGAA
GTAGAAAATGAAGAAGAACAGTGTGTACATTGTGTATTTGAATTAAGAAG
CGGAGTTGCTGATAAAATGATGCTCGGGCAGACAGAGTGGGCAAGATAGA
TGGGAGAACTAAAAAAACAGAAAAGCCAGTGCCTTTAAAAAAAAAAGAGT
GATAGAGGAGGAGAGAGCAGTACGTGGAGAAAGTTTGAACAACAACAACA
ACAACAACAAC

Coding sequence (CDS) from alignment at scaffold_6:309166..312176+

>mRNA_3432 ID=mRNA_3432|Name=jgi.p|Nanoce1779_2|582104|organism=Nannochloropsis oceanica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_6:309166..312176+ (Nannochloropsis oceanica)
ATGTCGGCGAGACGCAGGAGCAATGCGGGAGGAGGAGATAGAGGAGGACG
CAGGAGCAGCCTTGGGGTCGGGGCATCCCCAGCCGCCTCCCCTGCCGTCC
CACAGCGTCGCCTGGGCTTACGTGCCCGTGATTCGGGCGCTTTTGACTTG
GGCTTGCTACAACTGGACAGCGACGAGAAGGAGGACATCCAGGTAGCTGA
TGGTGATGGTGGTGTGCCGCTATTTGCGTTAGACGAGGAGGAGGGGCAGA
ATGTCAAGGCAAGCCATATTTTAGGGTCCGTGTTTGTTTTCGCCCTCTTT
AGCATGCTCTGCTACCTCATGCTCTGGAACGTGACTACGGTCAGCAAGGA
CTTCACCAATCCCTTGATTACGCGACACGGGCGCAACGGCACGTCATCGA
CAAAGGGTGTGGGGGTACCTGCGGGGGTGGGAGTTGACGGCGCGATGCTG
CAGGACTGGGCAAGCGACCAAGTGGTGAAAGCACTTATTGAAGAGGCGCT
GTTGAAGCGCATGAATGAACAGGACGCTAAGAACGCAGAATTCCAGCAGG
GTTTGTGGAATGTGACTCAATTGATAGAGAATGTGGCGAAGAAGTCCGAG
TTGTACACGGACACGGGGGCGGCTGCTGGTACTGTAGAGGCTAGCAACGT
CCGCTCCAAGACCGAATATATCCTCCAAGAGATCGAGTTGCTCAAGGCAC
AAATCGCGGCGGGAGAGGAGGAAGATGAGCGACGACTGCGGCATTCGGGG
GAGGAAAGAAATACGGTGATGGAGCGGTACGAGGAGCAGAAACAGAGCGC
AGAGATGGAGGTGAAGAAGCTGCAGGAGAAAGTCAAAATTTTGGAAGCGG
CCATTCAGTTGGACAAAAATCAAACGGCCCTTATGGAAGAAAAGCTTGCG
TCGCTTGCCTATAATATGAGCAGCTACGAGCACACCACCTCTGAGCAGGT
ACAAGTTTTGGGGGCAGCAGTGCGTGAGCTTCAGATGGAGGAGAAGGAGG
AGATGCTGAAAGAAGCACGTGCGACTGTCGAGGACATGGTGAAAGACTTG
ACAGCCCACCCCCTGGTGCTTGCAACGGAGCAGGCGCTTGAGGCCAGGAA
GGCTGCGGCAAGTGAGGAGTTCAATTTGTTGATAAAAAATTATGATGAGG
CGCGTATGGACATGGCCGAGTTGGCGGCTCAGACTGTCACGAGGATAGAA
GAGATCCGTGCCTTGGGGGCGTTCTCCCTCCCCACCACTGGCAAGATAGA
GGCAAAGGAAGGGGAGGAGGTGGAGGAGGAGGAAGGCGGCGAAGAGAGCA
AAGGAGCGGAAGCAGCAGCACTGACAGGGGATACAATGAGGGAATTGAAG
GAGGCGAGGGAAAGTGCCAAGAGGGCTGCTGAGACCATCGCGGCACAGAA
AGAAGAGTTAAGCGTGGACATAGAGTTGGCAAAGAATGTCCGCGCTGAGC
TTGCTGCCGCTCTTACTGCTGCTGCTGCAGCTGGGGCTGATGGTGCTGCT
GGTACCTGTAGTGGTGGTGGTGGTGGTAATGAATGGTCAGAGGAAATGCG
TGCGAAGATTCAGTGGCTGGAGGCGCTGGAGGTGGAGAATGAGCAGGCGA
GGATAAATACACAGCACAATTTAGAAATGTTCGAGGAGCTCAAAATGGGT
CTGTTGCGGATACAAGCCGAAAGGGAGGCTGACGCAAGGATTCCCGGAGC
AGCAAGAGGAGCAGAGGATGGAGCAGCAGTAGGTGCAGTAGTTGCAGCAG
CAGCAGGAAGAGCGCTGACAGAAGAGAATGCGTTGGCCATTGTTCGGGAC
GAAATAGAAAAGGCCGAGGAGCGTATTAAAACCTTGATCATGGTGATGGA
AAAAGAGGGAGGAGGAGCGGCAACTGTACCACCTGGGAGACCGACATTCC
AAGAACTCGAAGGCCTCATGGAGTCCAGGATTGGGCCCCTGGAAACAAGC
GTGCGACGCGTCAAGGAAGACCTTCGTCTCCTCTATGCCGATAATACAGA
CATGATTGATTATGCTGCCGACGCCTCGGGCGGGAAGATCGTGCCCCACC
TGTCCTCCGCAACCTACTCCAGCCCTCACCAACTCGTCGCCACTGACGTC
CTCCACTCCTTCGGTGCCAATGCACACATCGGCAAACGCGACGGTGTCAT
CAAGCCAGGCGCAAAAACCCTAGGCGATTGCTGGCCCTTGCAGGGCAGGA
GTGGTTCCCTGACCGTGCAGCTGAAAACCCCCCTCAATATCAGTCATGTC
TCGGTCGAGCACGTTGCAAGAAGCGTGACCAAATACCCTGGGACGGCCCC
GAGGAGTTTCCGGGTGTTGGGAAGAAAGAGCACACATGTGGCCGAGCAGC
CTCTGTTATTGCACAGTCAGAAGAATTTCGTCTACGATATTTACTCCGAG
AGGCTTGTGCAGACGTTCGCGTTGGACCGGGGACTGGACGGAGGGAAGGA
GGAAGGGGAAGAGGAAGGGTTTGGTGTGGTGACTCTTGAGGTATTGGATA
ATTGGGGAAATAATGACTACACGTGTTTATACCGGCTGAGGGTGCATGGA
GTGCCGGTGGGACAGGAAGAGGGAGGCTTCGGGGAAGTGCTTGAGGAGGG
AGGGGTGGAGGTTGTGGTTGAGGAGGGGCAGCAGCCGCTAGCACACCAGC
AGCATCACCAGTAG

Synonyms

Publications