jgi.p|Nanoce1779_2|582099, mRNA_3430 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582099
Unique Name	mRNA_3430
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2335
Alignment location	scaffold_6:304528..306879 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582185
Track	FilteredModels2
ProteinId	582099

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:304528..306879 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582099	gene_3430	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582099	mRNA_3430-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3430	CDS_3430	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:304528..306879-
coding sequence from alignment at scaffold_6:304528..306879-

mRNA sequence

>mRNA_3430 ID=mRNA_3430|Name=jgi.p|Nanoce1779_2|582099|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp
CTGAAGACGAAAAGCGCGACATGCAATTTGGAGAGGGATAGAGTGCCCGA
TCCATGGAACCCAAAAGATGGGGTCCGCCGGGACATCGGCCTATGCATCG
AGATTAAATCTGACGCGGGCATCCTTGACGAGCACATTGCTTTTCACTGG
TTCATTATTTACGACGATGGCTCGGATGGCAATCCTTGGTCGGTTTTGGA
GAAATATGTGGCTCTTGGCATCGTTGAATACCACGACTTGGCTGGTCATA
GGCAAGCAAGCTCCGACGCACTTCAGCTGAAAGTACTGAACGAGTGCTTT
ACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGGATACGGTGGGTCATGTT
TACTGACCTGGACGAATTTGTCTTGTCATCCGTTCCCGGCGAGACCTTGT
CCGACACACTCAATGCCAAGTACAAAGGAGAGGCGTGCTTGCAAGTCGCG
CGGACATGGTATGGATCGTCGTTTCGCCATCAAAAGCCCGTGGGGTTAGT
CACCGAGACATATTTACTTGCGTCTCCCGACAACGCCGATGGTATGCCTA
AATTAATGGCGAACATTCACCCGGAGAACAGGACTAGCAACGCCACCGCG
CTGTCCTCGGTCCATGATTCTGTGAATCAAACTGTGATTCCTTGTGTACT
CAAGAAGGATGTTAAGGACGTGCGGATCAACCATTATTTGAGAAGTTTGG
AAGAGTATCCACACCGATCGCCGGGAGGAGACATATGCGAATCCGTTGAA
AAGATTATTGGAGCGGGACTGGAATACGCATTTGAGTCTCTCTGCGTCGG
CTTATGCGTGCCAGGTCCATGCTTTGTTGATACAGGTGCAGGAAATGCAG
AGTGCGGGAAAGATCCCAGCGGTGGTAAGGTGAAAGGTATGGAACGAGAC
TCATATGAGGTAGGATATGAATTAGATGAATACAAAAATATTTATGATAT
GTATTCGAATATATGAGAAAAAGAGATTGTATACATGAGAGCAAAAGACA
AAAATGATAAAGGTTTTAATGGTGGCTTAAAATTCTTTTGGTGCTTTGTC
TGTGCTTTTTGTTTCATTTTTAAATCTTTAAAGCTGATGCATAGTCTCAC
GGCAGTCCCAACCCTGACCGCCTGTTTCTCAGAAATGAATAAGTTTATGT
TTCTCCCCATCCTACACCTTCATTTCTCTCTTGTTTACAGAGGCAAAGGT
GGGTGAGGTGGTAGGAGTAAGCAAATTGGGTAAGAAAAGTAAGTGTTGGT
CACGACAGAAAAACCATGAGACAGATGGGGATGTGGAGTGTATGTGTTTG
CGTGTAAGACCAGCCTCCACACGGCGATAGGGTAGACACCTTACTATCTT
ATGTACGGTCGCAATCTGCGCCTCCCCACGGATATCATACTTGCCCCAGC
TCTCCTATGAAAATCTCTCGGATTAGCAGCTGGTTCGTCGGCTGGGGCTG
GCTCACGCAGCTGCGGCAAAACTGAATAAGGAGGGAAGAGACCAGGCTCT
ACAACGCCTCCATTTAGGGTAAACGAATGACTTTCGAGGAAGGGGATAAG
GTTTGGTACAACTGCACAGATATAAATCTCAATTCTCTGTCGTACCCTAC
TGATTCAACCATAAAATATTGATTGTTATAAGGATCAGCATATGCTGGGG
ATGTTTTTCCTCAAGGCAACTTCTTCATCTGAGAGTGCTACTTCCTTGTG
CTGTTCTACTTGATAGCGTTCCCGGTGCTTGTTGGCTTCCGTGACCAATC
GCGGTATTGCTTCCTCAGGCTCTTCTTCCACTGGCTGCTCGAAATCCCCA
GGGGCAGAAAGCTCTGGTGTGACAAAATCTCTGACCTTGTAGTGATTCAG
TCGTGTAGCATGCACCATCTCGGGCTGCTACCACAGTCAAAACTGGTGGC
CTCCCCTCGAGAGCACAAAGAGTAGCATGCTGAGGATGAGAGGAGAGGCC
TTGGGCCAGGGGCACCCCTAGTTAGTACTACGCCAAAAAAAAATTGCAAA
TTGCAAAGACGATACTTAAAATTGCCTTCTTCCTCTTCTTGCCTGGTCTT
CTTTAGAGCTTTAGAAGGGAGTCTAGTCTCCCTCTCGCTCTGGTTGATAC
GCCAATGCCGCAGTGACAACGCGCCCCCGCTCAACCTGCACTTCCCAGTA
TGCGGAGATAAGTTCCCGTTGCAAGCCTCCCGGGGAAAAATGCATCCAGC
ACTCAAAGTACAACAATGACACACTCTCAAACGAAAAAAGGGGGCCTCAT
TGGGAAGTTTCACCTCGTCTCATTTATTACTCTTATTTATTTGACAGAGA
CATTTTTCATCAGATCGCCGACTTGCTTTGAAGCC

protein sequence of jgi.p|Nanoce1779_2|582099

>mRNA_3430-protein ID=mRNA_3430-protein|Name=jgi.p|Nanoce1779_2|582099|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
LKTKSATCNLERDRVPDPWNPKDGVRRDIGLCIEIKSDAGILDEHIAFHW
FIIYDDGSDGNPWSVLEKYVALGIVEYHDLAGHRQASSDALQLKVLNECF
TTFRERGPEEGIRWVMFTDLDEFVLSSVPGETLSDTLNAKYKGEACLQVA
RTWYGSSFRHQKPVGLVTETYLLASPDNADGMPKLMANIHPENRTSNATA
LSSVHDSVNQTVIPCVLKKDVKDVRINHYLRSLEEYPHRSPGGDICESVE
KIIGAGLEYAFESLCVGLCVPGPCFVDTGAGNAECGKDPSGGKVKGMERD
SYEVGYELDEYKNIYDMYSNI*

mRNA from alignment at scaffold_6:304528..306879-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3430 ID=mRNA_3430|Name=jgi.p|Nanoce1779_2|582099|organism=Nannochloropsis oceanica|type=mRNA|length=2352bp|location=Sequence derived from alignment at scaffold_6:304528..306879- (Nannochloropsis oceanica)
CTGAAGACGAAAAGCGCGACATGCAATTTGGAGAGGGATAGAGTGCCCGA
TCCATGGAACCCAAAAGATGGGGTCCGCCGGGACATCGGCCTATGCATCG
AGATTAAATCTGACGCGGGCATCCTTGACGAGCACATTGCTTTTCACTGG
GTGCAAGGCGTAGGAAGTTCATTATTTACGACGATGGCTCGGATGGCAAT
CCTTGGTCGGTTTTGGAGAAATATGTGGCTCTTGGCATCGTTGAATACCA
CGACTTGGCTGGTCATAGGCAAGCAAGCTCCGACGCACTTCAGCTGAAAG
TACTGAACGAGTGCTTTACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGG
ATACGGTGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGT
TCCCGGCGAGACCTTGTCCGACACACTCAATGCCAAGTACAAAGGAGAGG
CGTGCTTGCAAGTCGCGCGGACATGGTATGGATCGTCGTTTCGCCATCAA
AAGCCCGTGGGGTTAGTCACCGAGACATATTTACTTGCGTCTCCCGACAA
CGCCGATGGTATGCCTAAATTAATGGCGAACATTCACCCGGAGAACAGGA
CTAGCAACGCCACCGCGCTGTCCTCGGTCCATGATTCTGTGAATCAAACT
GTGATTCCTTGTGTACTCAAGAAGGATGTTAAGGACGTGCGGATCAACCA
TTATTTGAGAAGTTTGGAAGAGTATCCACACCGATCGCCGGGAGGAGACA
TATGCGAATCCGTTGAAAAGATTATTGGAGCGGGACTGGAATACGCATTT
GAGTCTCTCTGCGTCGGCTTATGCGTGCCAGGTCCATGCTTTGTTGATAC
AGGTGCAGGAAATGCAGAGTGCGGGAAAGATCCCAGCGGTGGTAAGGTGA
AAGGTATGGAACGAGACTCATATGAGGTAGGATATGAATTAGATGAATAC
AAAAATATTTATGATATGTATTCGAATATATGAGAAAAAGAGATTGTATA
CATGAGAGCAAAAGACAAAAATGATAAAGGTTTTAATGGTGGCTTAAAAT
TCTTTTGGTGCTTTGTCTGTGCTTTTTGTTTCATTTTTAAATCTTTAAAG
CTGATGCATAGTCTCACGGCAGTCCCAACCCTGACCGCCTGTTTCTCAGA
AATGAATAAGTTTATGTTTCTCCCCATCCTACACCTTCATTTCTCTCTTG
TTTACAGAGGCAAAGGTGGGTGAGGTGGTAGGAGTAAGCAAATTGGGTAA
GAAAAGTAAGTGTTGGTCACGACAGAAAAACCATGAGACAGATGGGGATG
TGGAGTGTATGTGTTTGCGTGTAAGACCAGCCTCCACACGGCGATAGGGT
AGACACCTTACTATCTTATGTACGGTCGCAATCTGCGCCTCCCCACGGAT
ATCATACTTGCCCCAGCTCTCCTATGAAAATCTCTCGGATTAGCAGCTGG
TTCGTCGGCTGGGGCTGGCTCACGCAGCTGCGGCAAAACTGAATAAGGAG
GGAAGAGACCAGGCTCTACAACGCCTCCATTTAGGGTAAACGAATGACTT
TCGAGGAAGGGGATAAGGTTTGGTACAACTGCACAGATATAAATCTCAAT
TCTCTGTCGTACCCTACTGATTCAACCATAAAATATTGATTGTTATAAGG
ATCAGCATATGCTGGGGATGTTTTTCCTCAAGGCAACTTCTTCATCTGAG
AGTGCTACTTCCTTGTGCTGTTCTACTTGATAGCGTTCCCGGTGCTTGTT
GGCTTCCGTGACCAATCGCGGTATTGCTTCCTCAGGCTCTTCTTCCACTG
GCTGCTCGAAATCCCCAGGGGCAGAAAGCTCTGGTGTGACAAAATCTCTG
ACCTTGTAGTGATTCAGTCGTGTAGCATGCACCATCTCGGGCTGCTACCA
CAGTCAAAACTGGTGGCCTCCCCTCGAGAGCACAAAGAGTAGCATGCTGA
GGATGAGAGGAGAGGCCTTGGGCCAGGGGCACCCCTAGTTAGTACTACGC
CAAAAAAAAATTGCAAATTGCAAAGACGATACTTAAAATTGCCTTCTTCC
TCTTCTTGCCTGGTCTTCTTTAGAGCTTTAGAAGGGAGTCTAGTCTCCCT
CTCGCTCTGGTTGATACGCCAATGCCGCAGTGACAACGCGCCCCCGCTCA
ACCTGCACTTCCCAGTATGCGGAGATAAGTTCCCGTTGCAAGCCTCCCGG
GGAAAAATGCATCCAGCACTCAAAGTACAACAATGACACACTCTCAAACG
AAAAAAGGGGGCCTCATTGGGAAGTTTCACCTCGTCTCATTTATTACTCT
TATTTATTTGACAGAGACATTTTTCATCAGATCGCCGACTTGCTTTGAAG
CC

Coding sequence (CDS) from alignment at scaffold_6:304528..306879-

>mRNA_3430 ID=mRNA_3430|Name=jgi.p|Nanoce1779_2|582099|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_6:304528..306879- (Nannochloropsis oceanica)
TTCATTATTTACGACGATGGCTCGGATGGCAATCCTTGGTCGGTTTTGGA
GAAATATGTGGCTCTTGGCATCGTTGAATACCACGACTTGGCTGGTCATA
GGCAAGCAAGCTCCGACGCACTTCAGCTGAAAGTACTGAACGAGTGCTTT
ACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGGATACGGTGGGTCATGTT
TACTGACCTGGACGAATTTGTCTTGTCATCCGTTCCCGGCGAGACCTTGT
CCGACACACTCAATGCCAAGTACAAAGGAGAGGCGTGCTTGCAAGTCGCG
CGGACATGGTATGGATCGTCGTTTCGCCATCAAAAGCCCGTGGGGTTAGT
CACCGAGACATATTTACTTGCGTCTCCCGACAACGCCGATGGTATGCCTA
AATTAATGGCGAACATTCACCCGGAGAACAGGACTAGCAACGCCACCGCG
CTGTCCTCGGTCCATGATTCTGTGAATCAAACTGTGATTCCTTGTGTACT
CAAGAAGGATGTTAAGGACGTGCGGATCAACCATTATTTGAGAAGTTTGG
AAGAGTATCCACACCGATCGCCGGGAGGAGACATATGCGAATCCGTTGAA
AAGATTATTGGAGCGGGACTGGAATACGCATTTGAGTCTCTCTGCGTCGG
CTTATGCGTGCCAGGTCCATGCTTTGTTGATACAGGTGCAGGAAATGCAG
AGTGCGGGAAAGATCCCAGCGGTGGTAAGGTGAAAGGTATGGAACGAGAC
TCATATGAGGTAGGATATGAATTAGATGAATACAAAAATATTTATGATAT
GTATTCGAATATATGACTGAAGACGAAAAGCGCGACATGCAATTTGGAGA
GGGATAGAGTGCCCGATCCATGGAACCCAAAAGATGGGGTCCGCCGGGAC
ATCGGCCTATGCATCGAGATTAAATCTGACGCGGGCATCCTTGACGAGCA
CATTGCTTTTCACTGGTTCATTATTTACGACGATGGCTCGGATGGCAATC
CTTGGTCGGTTTTGGAGAAATATGTGGCTCTTGGCATCGTTGAATACCAC
GACTTGGCTGGTCATAGGCAAGCAAGCTCCGACGCACTTCAGCTGAAAGT
ACTGAACGAGTGCTTTACAACGTTTCGGGAGCGCGGGCCAGAGGAGGGGA
TACGGTGGGTCATGTTTACTGACCTGGACGAATTTGTCTTGTCATCCGTT
CCCGGCGAGACCTTGTCCGACACACTCAATGCCAAGTACAAAGGAGAGGC
GTGCTTGCAAGTCGCGCGGACATGGTATGGATCGTCGTTTCGCCATCAAA
AGCCCGTGGGGTTAGTCACCGAGACATATTTACTTGCGTCTCCCGACAAC
GCCGATGGTATGCCTAAATTAATGGCGAACATTCACCCGGAGAACAGGAC
TAGCAACGCCACCGCGCTGTCCTCGGTCCATGATTCTGTGAATCAAACTG
TGATTCCTTGTGTACTCAAGAAGGATGTTAAGGACGTGCGGATCAACCAT
TATTTGAGAAGTTTGGAAGAGTATCCACACCGATCGCCGGGAGGAGACAT
ATGCGAATCCGTTGAAAAGATTATTGGAGCGGGACTGGAATACGCATTTG
AGTCTCTCTGCGTCGGCTTATGCGTGCCAGGTCCATGCTTTGTTGATACA
GGTGCAGGAAATGCAGAGTGCGGGAAAGATCCCAGCGGTGGTAAGGTGAA
AGGTATGGAACGAGACTCATATGAGGTAGGATATGAATTAGATGAATACA
AAAATATTTATGATATGTATTCGAATATATGACTGAAGACGAAAAGCGCG
ACATGCAATTTGGAGAGGGATAGAGTGCCCGATCCATGGAACCCAAAAGA
TGGGGTCCGCCGGGACATCGGCCTATGCATCGAGATTAAATCTGACGCGG
GCATCCTTGACGAGCACATTGCTTTTCACTGG

Synonyms

Publications