jgi.p|Nanoce1779_2|526031, mRNA_3429 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526031
Unique NamemRNA_3429
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length579
Alignment locationscaffold_6:303032..303610 -

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Properties
Property NameValue
TranscriptId526117
TrackFilteredModels2
ProteinId526031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:303032..303610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526031gene_3429Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3429CDS_3429Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526031mRNA_3429-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Nanoce1779_2|526031|organism=Nannochloropsis oceanica|type=mRNA|length=579bp
ATGCGCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGG
TGCAACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACA
AGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGG
AAAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCC
CCTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCC
CTCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGC
CTCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACG
CAGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTG
CGGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTC
CAACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCT
CCACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGG
ATTCGGAAGAGATCGTACGGAAACTTTTG
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protein sequence of jgi.p|Nanoce1779_2|526031

>mRNA_3429-protein ID=mRNA_3429-protein|Name=jgi.p|Nanoce1779_2|526031|organism=Nannochloropsis oceanica|type=polypeptide|length=193bp
MRKERLVAYLTKCYDGGATSKQWHQRKKEQQEDKQEEEEEEEEEEEEEEG
KDVVKEVPVFRVHKSSPLRSRTVSSRCSSPSSLPPGVLTENLGVPLIVVG
LQADLVHAPDSFEDEQRSQFLQQYLRSFCLKHGAALVYVSATRDTNCLLL
QRYILHRLYPELFPFSLHAQARRRESLFVPAGWDSEEIVRKLL
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mRNA from alignment at scaffold_6:303032..303610-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Nanoce1779_2|526031|organism=Nannochloropsis oceanica|type=mRNA|length=579bp|location=Sequence derived from alignment at scaffold_6:303032..303610- (Nannochloropsis oceanica)
ATGCGCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGG
TGCAACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACA
AGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGG
AAAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCC
CCTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCC
CTCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGC
CTCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACG
CAGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTG
CGGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTC
CAACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCT
CCACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGG
ATTCGGAAGAGATCGTACGGAAACTTTTG
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Coding sequence (CDS) from alignment at scaffold_6:303032..303610-

>mRNA_3429 ID=mRNA_3429|Name=jgi.p|Nanoce1779_2|526031|organism=Nannochloropsis oceanica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_6:303032..303610- (Nannochloropsis oceanica)
ATGCGCAAAGAAAGATTGGTGGCTTACCTCACCAAATGTTATGACGGTGG
TGCAACGTCTAAGCAGTGGCATCAGCGGAAAAAAGAGCAACAAGAGGACA
AGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGG
AAAGATGTAGTCAAGGAAGTCCCTGTATTCCGAGTTCACAAATCATCGCC
CCTGAGAAGCAGAACTGTCTCCTCTCGCTGCTCCAGTCCTTCCTCCCTCC
CTCCCGGAGTCCTGACTGAGAACCTCGGCGTTCCTCTCATCGTCGTAGGC
CTCCAAGCCGATCTCGTCCACGCCCCCGACAGCTTCGAAGACGAGCAACG
CAGCCAGTTCCTCCAACAATACCTCCGTTCCTTTTGCCTTAAGCACGGTG
CGGCCCTCGTCTACGTCTCCGCCACCCGGGACACCAACTGCCTGCTCCTC
CAACGCTACATACTCCACCGCCTCTATCCGGAGCTTTTCCCATTCTCTCT
CCACGCACAAGCCCGTCGCCGAGAGTCCCTCTTCGTCCCTGCCGGATGGG
ATTCGGAAGAGATCGTACGGAAACTTTTG
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Synonyms
Publications