jgi.p|Nanoce1779_2|582084, mRNA_3426 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582084
Unique NamemRNA_3426
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length856
Alignment locationscaffold_6:292653..293508 +

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Properties
Property NameValue
TranscriptId582170
TrackFilteredModels2
ProteinId582084
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:292653..293508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582084gene_3426Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582084mRNA_3426-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3426CDS_3426Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Nanoce1779_2|582084|organism=Nannochloropsis oceanica|type=mRNA|length=856bp
CTTCCAAAATTTCAGTGTATCTAGTTTTGCGTCTCATTTGTGGTCTTAAG
CTCTCTTGTCCTTATTCTTGTTCTTGTCGAACTTGGTTGTGGTGGTGATG
TTGACATTGTTGATGTCAGTGTAGTATTAAGGGGGAGGAGCGCTGGCTAG
TCCCAAAAAGCCTTTTGGGGGGAAAGCGAGGGGGGAGGGGCGGAGGGAGG
GGGCTGGCACATAAACTTCTGCATGTGGCGCATCCATTCGCTATTGTGCT
CTCTGATAAAACTCTTTCTCTTTGCCGCCGCTTCCTCTTTCACTCCCTTC
CTTGTAAGTCGAACTGTTGCCTCTCAAAGCGCACGCATTTGATGTTCGCT
TATAATTCACTGTTTAATCCCCTCTTCTCGCTGACAGGGGAGTGAGTGCA
CGGCCACGAGTGCACTCCATCTCTTTTTCCTTGTAATGCTTTTTTCCAGT
TCGTGTCCTTTCACTCATAAGTACGCGAGTTCACGACCGAGACACTGGAG
GGTACTGCTGGTGGTCGTCCTGCTGCTGCTGCTCCTGCTCTTGCTTTCTT
CTCCTCCTCCTGGTGATGCTGCTGACGCCGCTGGTGCTCTCCCATCTACT
TCTTCTTCATCTTGATTTCGCTCTTTCTCTTCTTCCTTCTCCTCCTCCTC
TTCTTGTACTTCTTCTTCCACTTGTCCCTCTTCTTCTTACTCTTATTCTC
CTTCCTCTTCTTCCCCTTCCTCTTCTTCCCCTTCATCTATTTCTCCTTCT
TCCTTATCCTTCTCTTCCTTTGATTCCCCTTCTTTCTTAGATTTCTTCTT
CGTTTTCTTCTCCTCCTTTTCCTGCTCCTTCCCCTTCTCCTCCTTCTCCT
CCTCCT
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protein sequence of jgi.p|Nanoce1779_2|582084

>mRNA_3426-protein ID=mRNA_3426-protein|Name=jgi.p|Nanoce1779_2|582084|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MLLTPLVLSHLLLLHLDFALSLLPSPPPLLVLLLPLVPLLLTLILLPLLP
LPLLPLHLFLLLPYPSLPLIPLLS*
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mRNA from alignment at scaffold_6:292653..293508+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Nanoce1779_2|582084|organism=Nannochloropsis oceanica|type=mRNA|length=856bp|location=Sequence derived from alignment at scaffold_6:292653..293508+ (Nannochloropsis oceanica)
CTTCCAAAATTTCAGTGTATCTAGTTTTGCGTCTCATTTGTGGTCTTAAG
CTCTCTTGTCCTTATTCTTGTTCTTGTCGAACTTGGTTGTGGTGGTGATG
TTGACATTGTTGATGTCAGTGTAGTATTAAGGGGGAGGAGCGCTGGCTAG
TCCCAAAAAGCCTTTTGGGGGGAAAGCGAGGGGGGAGGGGCGGAGGGAGG
GGGCTGGCACATAAACTTCTGCATGTGGCGCATCCATTCGCTATTGTGCT
CTCTGATAAAACTCTTTCTCTTTGCCGCCGCTTCCTCTTTCACTCCCTTC
CTTGTAAGTCGAACTGTTGCCTCTCAAAGCGCACGCATTTGATGTTCGCT
TATAATTCACTGTTTAATCCCCTCTTCTCGCTGACAGGGGAGTGAGTGCA
CGGCCACGAGTGCACTCCATCTCTTTTTCCTTGTAATGCTTTTTTCCAGT
TCGTGTCCTTTCACTCATAAGTACGCGAGTTCACGACCGAGACACTGGAG
GGTACTGCTGGTGGTCGTCCTGCTGCTGCTGCTCCTGCTCTTGCTTTCTT
CTCCTCCTCCTGGTGATGCTGCTGACGCCGCTGGTGCTCTCCCATCTACT
TCTTCTTCATCTTGATTTCGCTCTTTCTCTTCTTCCTTCTCCTCCTCCTC
TTCTTGTACTTCTTCTTCCACTTGTCCCTCTTCTTCTTACTCTTATTCTC
CTTCCTCTTCTTCCCCTTCCTCTTCTTCCCCTTCATCTATTTCTCCTTCT
TCCTTATCCTTCTCTTCCTTTGATTCCCCTTCTTTCTTAGATTTCTTCTT
CGTTTTCTTCTCCTCCTTTTCCTGCTCCTTCCCCTTCTCCTCCTTCTCCT
CCTCCT
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Coding sequence (CDS) from alignment at scaffold_6:292653..293508+

>mRNA_3426 ID=mRNA_3426|Name=jgi.p|Nanoce1779_2|582084|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_6:292653..293508+ (Nannochloropsis oceanica)
ATGCTGCTGACGCCGCTGGTGCTCTCCCATCTACTTCTTCTTCATCTTGA
TTTCGCTCTTTCTCTTCTTCCTTCTCCTCCTCCTCTTCTTGTACTTCTTC
TTCCACTTGTCCCTCTTCTTCTTACTCTTATTCTCCTTCCTCTTCTTCCC
CTTCCTCTTCTTCCCCTTCATCTATTTCTCCTTCTTCCTTATCCTTCTCT
TCCTTTGATTCCCCTTCTTTCTTAG
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Synonyms
Publications