jgi.p|Nanoce1779_2|582069, mRNA_3421 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582069
Unique NamemRNA_3421
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1589
Alignment locationscaffold_6:280507..282095 -

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Properties
Property NameValue
TranscriptId582155
TrackFilteredModels2
ProteinId582069
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:280507..282095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582069gene_3421Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582069mRNA_3421-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3421CDS_3421Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3421 ID=mRNA_3421|Name=jgi.p|Nanoce1779_2|582069|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp
CTGCAGCTCCAGAGGCGGTAGAGGAGGATCACGGAGCGGAGAAGCAAGAG
GAGAAGGATGTGGCAGTATTGGAGGAAGAGAACATGGAGGCACTAGAGGA
TAATTGTGTTTCAGTAGAGAAGGCGAAAGAAATTGAGGAGCTCACCCAGG
AAAGGACTATTGAGGAGCAAAAGCAGCAACGCCAGATGCAGCAGCAGTCA
AGAGCAACGCCTATGGTAGGGGAGGAGAAAGGGAAGAAACAAGAGGAGGA
GGAAGATGAGCAGCAGCAGGAGCAGGAAAATAAGCAGAAGGAAGAATTTG
CTATCGAGGCAAATGTCAATACCGAGGCCCTCCCTACTGCTAATGTGGCA
GCTGCGGAAGAGGGCGACGTCTCCGTAGTCAAGACCAGCGTGCCGGAGCA
AGGGGCTCTAGAGCATGGCCAAGAGAAGGAGGTAGATGAAGACCGTTCAT
GTGACGTTGATCATGACCAAGAGGAAGAGGAAGTAGTGATCAACCCCCTC
CCTTCCATCCTGGCGTATGCCCCTCCCCCTCCTATCCACGTTCAATCCGA
GGACACCGCGGACGACGAGGACGACGATGTCAGCAACAGCAGTAGCAGCA
GCAGTAGCAGTAGCACCAACTCTTTACACATTGCTCACATTCACACCCAT
CCTGCCCAGGATATCGTCTCACGACCCGTCCCCGACGAGGCCAAGCAAGT
AGCTACAACTGCTCCTCCCTCTAGCCCTACCTCAGTCCGGCAGCACGGAG
ACGTCGGCCTTTCAGGGGCGGCCATGGTGGCAGGATGGGGGAGCGGGAGG
GCAGAATTGGAAAGGCTCTACGATCGAGGGTTTGTGAGCGAGGATATCTC
TTTAATGGAGGTCGTCACGGTGTTCGGGCTGGAGTATTTACACCATATGG
TGCAGACTCACCGGGAGAGGTTGAGAGAGTTGAAGCAAGGGTGGTGCTTA
CCGAGATTCAGCTGGAGGGGAGGGGCGTGTGCACCGAACCCAGTGGTGAG
GTTTGCGTTGGTCATGTGGGATGTTGCCAGGGGAGAAGCGAGGAGAGTAC
AAAGGCTGGCGATTGAATGGGGGGGCATGGCAGCGCACCAGGTTCAGCTT
GCTCTGCCGGCCCCGCCGGGGCCAGGAGCGGCGGAGGCAGCGGCGCAAGC
TGCCGGGGAAATTATTTGGTGGTGGCAGGAGAAAGTGACGACTTCGGTCG
TGCGGACTGCGAAGAGGCCGTTGGCTTTCCTGCAAGGTTTGAAGGATCGG
GGTGGGGTGATGATGATGAGGAAGGAGAAAGGGAAGGGGAAGGGAGGGAA
GAGGAAGAAGGCTGGTGTTGGAGGCAAGAAAAGGAAGAAGAACAAGGGGG
AAAAGACCGGAACAGGAGTGACAGCGGCTCCGACCACCCCGTCGACGAAG
CGTAAGGCTGCAGCGGCTGCTGCTTTGCCGGTGGAGGGGATAGTTGGGGA
GGAGGAGGAGAAATAGATATGTAGACTTAATTGTGGGAGTGTTTCTGAGT
GAGTAGATGATTGTGGAAGTGGATGCCAGTAGCGGCGTGTTCATGTGTGT
ATATCTTAAAGGATAGTAGGTCTTCTCTGTATGCGAGGA
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protein sequence of jgi.p|Nanoce1779_2|582069

>mRNA_3421-protein ID=mRNA_3421-protein|Name=jgi.p|Nanoce1779_2|582069|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MEALEDNCVSVEKAKEIEELTQERTIEEQKQQRQMQQQSRATPMVGEEKG
KKQEEEEDEQQQEQENKQKEEFAIEANVNTEALPTANVAAAEEGDVSVVK
TSVPEQGALEHGQEKEVDEDRSCDVDHDQEEEEVVINPLPSILAYAPPPP
IHVQSEDTADDEDDDVSNSSSSSSSSSTNSLHIAHIHTHPAQDIVSRPVP
DEAKQVATTAPPSSPTSVRQHGDVGLSGAAMVAGWGSGRAELERLYDRGF
VSEDISLMEVVTVFGLEYLHHMVQTHRERLRELKQGWCLPRFSWRGGACA
PNPVVRFALVMWDVARGEARRVQRLAIEWGGMAAHQVQLALPAPPGPGAA
EAAAQAAGEIIWWWQEKVTTSVVRTAKRPLAFLQGLKDRGGVMMMRKEKG
KGKGGKRKKAGVGGKKRKKNKGEKTGTGVTAAPTTPSTKRKAAAAAALPV
EGIVGEEEEK*
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mRNA from alignment at scaffold_6:280507..282095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3421 ID=mRNA_3421|Name=jgi.p|Nanoce1779_2|582069|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_6:280507..282095- (Nannochloropsis oceanica)
CTGCAGCTCCAGAGGCGGTAGAGGAGGATCACGGAGCGGAGAAGCAAGAG
GAGAAGGATGTGGCAGTATTGGAGGAAGAGAACATGGAGGCACTAGAGGA
TAATTGTGTTTCAGTAGAGAAGGCGAAAGAAATTGAGGAGCTCACCCAGG
AAAGGACTATTGAGGAGCAAAAGCAGCAACGCCAGATGCAGCAGCAGTCA
AGAGCAACGCCTATGGTAGGGGAGGAGAAAGGGAAGAAACAAGAGGAGGA
GGAAGATGAGCAGCAGCAGGAGCAGGAAAATAAGCAGAAGGAAGAATTTG
CTATCGAGGCAAATGTCAATACCGAGGCCCTCCCTACTGCTAATGTGGCA
GCTGCGGAAGAGGGCGACGTCTCCGTAGTCAAGACCAGCGTGCCGGAGCA
AGGGGCTCTAGAGCATGGCCAAGAGAAGGAGGTAGATGAAGACCGTTCAT
GTGACGTTGATCATGACCAAGAGGAAGAGGAAGTAGTGATCAACCCCCTC
CCTTCCATCCTGGCGTATGCCCCTCCCCCTCCTATCCACGTTCAATCCGA
GGACACCGCGGACGACGAGGACGACGATGTCAGCAACAGCAGTAGCAGCA
GCAGTAGCAGTAGCACCAACTCTTTACACATTGCTCACATTCACACCCAT
CCTGCCCAGGATATCGTCTCACGACCCGTCCCCGACGAGGCCAAGCAAGT
AGCTACAACTGCTCCTCCCTCTAGCCCTACCTCAGTCCGGCAGCACGGAG
ACGTCGGCCTTTCAGGGGCGGCCATGGTGGCAGGATGGGGGAGCGGGAGG
GCAGAATTGGAAAGGCTCTACGATCGAGGGTTTGTGAGCGAGGATATCTC
TTTAATGGAGGTCGTCACGGTGTTCGGGCTGGAGTATTTACACCATATGG
TGCAGACTCACCGGGAGAGGTTGAGAGAGTTGAAGCAAGGGTGGTGCTTA
CCGAGATTCAGCTGGAGGGGAGGGGCGTGTGCACCGAACCCAGTGGTGAG
GTTTGCGTTGGTCATGTGGGATGTTGCCAGGGGAGAAGCGAGGAGAGTAC
AAAGGCTGGCGATTGAATGGGGGGGCATGGCAGCGCACCAGGTTCAGCTT
GCTCTGCCGGCCCCGCCGGGGCCAGGAGCGGCGGAGGCAGCGGCGCAAGC
TGCCGGGGAAATTATTTGGTGGTGGCAGGAGAAAGTGACGACTTCGGTCG
TGCGGACTGCGAAGAGGCCGTTGGCTTTCCTGCAAGGTTTGAAGGATCGG
GGTGGGGTGATGATGATGAGGAAGGAGAAAGGGAAGGGGAAGGGAGGGAA
GAGGAAGAAGGCTGGTGTTGGAGGCAAGAAAAGGAAGAAGAACAAGGGGG
AAAAGACCGGAACAGGAGTGACAGCGGCTCCGACCACCCCGTCGACGAAG
CGTAAGGCTGCAGCGGCTGCTGCTTTGCCGGTGGAGGGGATAGTTGGGGA
GGAGGAGGAGAAATAGATATGTAGACTTAATTGTGGGAGTGTTTCTGAGT
GAGTAGATGATTGTGGAAGTGGATGCCAGTAGCGGCGTGTTCATGTGTGT
ATATCTTAAAGGATAGTAGGTCTTCTCTGTATGCGAGGA
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Coding sequence (CDS) from alignment at scaffold_6:280507..282095-

>mRNA_3421 ID=mRNA_3421|Name=jgi.p|Nanoce1779_2|582069|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at scaffold_6:280507..282095- (Nannochloropsis oceanica)
ATGGAGGCACTAGAGGATAATTGTGTTTCAGTAGAGAAGGCGAAAGAAAT
TGAGGAGCTCACCCAGGAAAGGACTATTGAGGAGCAAAAGCAGCAACGCC
AGATGCAGCAGCAGTCAAGAGCAACGCCTATGGTAGGGGAGGAGAAAGGG
AAGAAACAAGAGGAGGAGGAAGATGAGCAGCAGCAGGAGCAGGAAAATAA
GCAGAAGGAAGAATTTGCTATCGAGGCAAATGTCAATACCGAGGCCCTCC
CTACTGCTAATGTGGCAGCTGCGGAAGAGGGCGACGTCTCCGTAGTCAAG
ACCAGCGTGCCGGAGCAAGGGGCTCTAGAGCATGGCCAAGAGAAGGAGGT
AGATGAAGACCGTTCATGTGACGTTGATCATGACCAAGAGGAAGAGGAAG
TAGTGATCAACCCCCTCCCTTCCATCCTGGCGTATGCCCCTCCCCCTCCT
ATCCACGTTCAATCCGAGGACACCGCGGACGACGAGGACGACGATGTCAG
CAACAGCAGTAGCAGCAGCAGTAGCAGTAGCACCAACTCTTTACACATTG
CTCACATTCACACCCATCCTGCCCAGGATATCGTCTCACGACCCGTCCCC
GACGAGGCCAAGCAAGTAGCTACAACTGCTCCTCCCTCTAGCCCTACCTC
AGTCCGGCAGCACGGAGACGTCGGCCTTTCAGGGGCGGCCATGGTGGCAG
GATGGGGGAGCGGGAGGGCAGAATTGGAAAGGCTCTACGATCGAGGGTTT
GTGAGCGAGGATATCTCTTTAATGGAGGTCGTCACGGTGTTCGGGCTGGA
GTATTTACACCATATGGTGCAGACTCACCGGGAGAGGTTGAGAGAGTTGA
AGCAAGGGTGGTGCTTACCGAGATTCAGCTGGAGGGGAGGGGCGTGTGCA
CCGAACCCAGTGGTGAGGTTTGCGTTGGTCATGTGGGATGTTGCCAGGGG
AGAAGCGAGGAGAGTACAAAGGCTGGCGATTGAATGGGGGGGCATGGCAG
CGCACCAGGTTCAGCTTGCTCTGCCGGCCCCGCCGGGGCCAGGAGCGGCG
GAGGCAGCGGCGCAAGCTGCCGGGGAAATTATTTGGTGGTGGCAGGAGAA
AGTGACGACTTCGGTCGTGCGGACTGCGAAGAGGCCGTTGGCTTTCCTGC
AAGGTTTGAAGGATCGGGGTGGGGTGATGATGATGAGGAAGGAGAAAGGG
AAGGGGAAGGGAGGGAAGAGGAAGAAGGCTGGTGTTGGAGGCAAGAAAAG
GAAGAAGAACAAGGGGGAAAAGACCGGAACAGGAGTGACAGCGGCTCCGA
CCACCCCGTCGACGAAGCGTAAGGCTGCAGCGGCTGCTGCTTTGCCGGTG
GAGGGGATAGTTGGGGAGGAGGAGGAGAAATAG
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Synonyms
Publications