jgi.p|Nanoce1779_2|577043, mRNA_342 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577043
Unique Name	mRNA_342
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1892
Alignment location	scaffold_3:841636..843742 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577129
Track	FilteredModels2
ProteinId	577043

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:841636..843742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577043	gene_342	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577043	mRNA_342-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_342	CDS_342	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:841636..843742+
coding sequence from alignment at scaffold_3:841636..843742+

mRNA sequence

>mRNA_342 ID=mRNA_342|Name=jgi.p|Nanoce1779_2|577043|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp
ACAGCTGCAGCGGCAACAGCACGCAATGGCCCACTTTACGGACCTACCTC
TTCTCGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAGCGA
GTCCTTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCCGAT
AGTCATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGGGCG
AGGTCAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTCACC
ACCACGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTGCAA
CCTGACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAAGTG
ACGTTCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTACCG
GCCGAGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGACCT
GGTGTCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAATTAC
CACCCGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATGGAT
GCATTTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGGTCT
CTTGGCCTGGCAGCTCTGCAAGCGCTATTCTGACTTTGCCGTCATGCATG
AAAGGCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAGCAA
GGAGAAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCTCTT
TCAGGCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGCAAG
TGGTGGATCGACCGTTCTCAAGGGAAAATCCTCATGTGCTAGCCTTCCTA
GGCATCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGACAT
AAGTAACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGCACA
TTTCAGCGTTAGGGAAACCGCTGCAAATGGGGGATATTGTCTTGTTTCAA
TGTGCGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGAGTG
GGACCATGTAGCCCTCGTTGTCAAGAGACAAGACGGCCGTGAGTTCGACT
TGCTGGAAAGCACCGCTGACGGTGTCACGTGTTGGCCTCTTTCTTCTCGT
ATAAGCGCTTATGCCACCGAGTTCACCTCCTACATGGGCATCCGCAAGCT
GGAGGGAGAACGAACACCCGCAATGCAAAAACGATTGCATGCATTCGTCG
AGCAAGTAAAGGGTAAGCCATACGGGTTTCCGCTCGGCGCATTGTTCGCG
AGTAAATATGTGGCGCCCACCCAGGCGATTGCTTCACCTGTGGGTGCTGG
GCCAATATCGGAAGGAGATTCTTCTTCTTCGATCTCCTCCTCCTCCTTCC
CTTGTTCCTTCTCGTCTTTTTTATCTCTCAACGATTTTCGCGGACGCTGG
CGGGAACTAGGGACTGCTGCCGTTAATGAACTTTTTAAATTGGGCCTGAG
AAGTAAAGGAGAAAGGGATAAACAGGAAGTAGCACCAGCAGTAACAAAAG
CAGCTCCAGCAGTAACAAAAGCAGCACCAGCAGCTAGCCCCCCCCGACAA
GTAAAGAACGCCGCTGAAGAGGAAGCTCCAGGAAGCTTTTTCTGCAGTAA
TCTAGTCGCTGCGGCCCTGCGTGAGATGGGCGTGCTAAAGGCCGAGAGAA
ACATAAATTATTTCTTGCCCGGGGCATTCACGGCGGGAGGGGAGGTGGAT
GAGGCAGTGAGGGCAGGATGGAGGTTTGGAGATGTTATATTGTTGGATGT
GTCGGCGCTTGAGATGGGCAAGGCGTCAATGGTAGAAGATGGTTGAGATG
AATAATTGAGTCGTGTATAAAGAAAGTGATTTGAAAAAAGGG

protein sequence of jgi.p|Nanoce1779_2|577043

>mRNA_342-protein ID=mRNA_342-protein|Name=jgi.p|Nanoce1779_2|577043|organism=Nannochloropsis oceanica|type=polypeptide|length=607bp
MAHFTDLPLLVPFPPFPRTPLHQQRVLIQLPPSTGSSLFSPIVICIYLPE
STSKTRVGEVKGALFQALALAPAVTTTTTSVPESQSNESWCNLTLGKAPT
FHPTAKQSDVQPLLTRGPNCYVLLPAELQGQGSITFLDDNDLVSVAPREW
CLMPANELPPARFLVRITSTRRKMDAFGKEYVAYDITVKNGLLAWQLCKR
YSDFAVMHERLNKHEQQQRQQLQQQGEETILLPLPHLPSKLFQAVQGRKE
RLEVYLQQVVDRPFSRENPHVLAFLGILSSMSAKLYSIHTDISNTTNNTS
RKKRQILHISALGKPLQMGDIVLFQCAHNMAGLQRNVTRSEWDHVALVVK
RQDGREFDLLESTADGVTCWPLSSRISAYATEFTSYMGIRKLEGERTPAM
QKRLHAFVEQVKGKPYGFPLGALFASKYVAPTQAIASPVGAGPISEGDSS
SSISSSSFPCSFSSFLSLNDFRGRWRELGTAAVNELFKLGLRSKGERDKQ
EVAPAVTKAAPAVTKAAPAASPPRQVKNAAEEEAPGSFFCSNLVAAALRE
MGVLKAERNINYFLPGAFTAGGEVDEAVRAGWRFGDVILLDVSALEMGKA
SMVEDG*

mRNA from alignment at scaffold_3:841636..843742+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_342 ID=mRNA_342|Name=jgi.p|Nanoce1779_2|577043|organism=Nannochloropsis oceanica|type=mRNA|length=2107bp|location=Sequence derived from alignment at scaffold_3:841636..843742+ (Nannochloropsis oceanica)
ACAGCTGCAGCGGCAACAGCACGCAATGGCCCACTTTACGGACCTACCTC
TTCTCGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAGCGA
GTCCTTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCCGAT
AGTCATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGGGCG
AGGTCAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTCACC
ACCACGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTGCAA
CCTGACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAAGTG
ACGTTCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTACCG
GCCGAGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGACCT
GGTGTCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAATTAC
CACCCGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATGGAT
GCATTTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGGTCT
CTTGGCCTGGCAGCTCTGCAAGCGCTATTCTGACTTTGCCGTCATGCATG
AAAGGCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAGCAA
GGAGAAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCTCTT
TCAGGCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGCAAG
TGGTGGATCGACCGTTCTCAAGGGAAAATCCTCATGTGCTAGCCTTCCTA
GGCATCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGACAT
AAGTAACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGCACA
TTTCAGCGTTAGGGAAACCGCTGCAAATGGGGGATATTGTCTTGTTTCAA
TGTGCGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGAGTG
GGACCATGGTAGGTTTGGGGCAAGTACGTATGGCTGGGTCTAAACTTCTC
CCCTGATGACACGCTTATCCCAATCTTATCGAAGCGGATATTGTCTTGAC
TGTCCATACTGTTCCTTCGGCTCGTAGGTGTCGAATTCCCAAGCTAATTT
TCCAATCAACCTTCCTTTTCGTTCCTACATCTCATCTTCTTCCATCCATT
TCCCCTTCTTCCCCCTTCAACAGTAGCCCTCGTTGTCAAGAGACAAGACG
GCCGTGAGTTCGACTTGCTGGAAAGCACCGCTGACGGTGTCACGTGTTGG
CCTCTTTCTTCTCGTATAAGCGCTTATGCCACCGAGTTCACCTCCTACAT
GGGCATCCGCAAGCTGGAGGGAGAACGAACACCCGCAATGCAAAAACGAT
TGCATGCATTCGTCGAGCAAGTAAAGGGTAAGCCATACGGGTTTCCGCTC
GGCGCATTGTTCGCGAGTAAATATGTGGCGCCCACCCAGGCGATTGCTTC
ACCTGTGGGTGCTGGGCCAATATCGGAAGGAGATTCTTCTTCTTCGATCT
CCTCCTCCTCCTTCCCTTGTTCCTTCTCGTCTTTTTTATCTCTCAACGAT
TTTCGCGGACGCTGGCGGGAACTAGGGACTGCTGCCGTTAATGAACTTTT
TAAATTGGGCCTGAGAAGTAAAGGAGAAAGGGATAAACAGGAAGTAGCAC
CAGCAGTAACAAAAGCAGCTCCAGCAGTAACAAAAGCAGCACCAGCAGCT
AGCCCCCCCCGACAAGTAAAGAACGCCGCTGAAGAGGAAGCTCCAGGAAG
CTTTTTCTGCAGTAATCTAGTCGCTGCGGCCCTGCGTGAGATGGGCGTGC
TAAAGGCCGAGAGAAACATAAATTATTTCTTGCCCGGGGCATTCACGGCG
GGAGGGGAGGTGGATGAGGCAGTGAGGGCAGGATGGAGGTTTGGAGATGT
TATATTGTTGGATGTGTCGGCGCTTGAGATGGGCAAGGCGTCAATGGTAG
AAGATGGTTGAGATGAATAATTGAGTCGTGTATAAAGAAAGTGATTTGAA
AAAAGGG

Coding sequence (CDS) from alignment at scaffold_3:841636..843742+

>mRNA_342 ID=mRNA_342|Name=jgi.p|Nanoce1779_2|577043|organism=Nannochloropsis oceanica|type=CDS|length=3642bp|location=Sequence derived from alignment at scaffold_3:841636..843742+ (Nannochloropsis oceanica)
ATGGCCCACTTTACGGACCTACCTCTTCTCGTGCCGTTTCCCCCGTTTCC
CCGGACCCCACTTCACCAGCAGCGAGTCCTTATCCAGCTCCCACCGTCAA
CCGGATCATCCCTCTTCTCGCCGATAGTCATATGTATATATTTACCGGAG
AGCACATCAAAAACGCGGGTGGGCGAGGTCAAGGGCGCCTTGTTTCAAGC
CCTAGCTTTAGCACCGGCTGTCACCACCACGACTACCAGCGTCCCGGAGT
CCCAGAGCAACGAATCATGGTGCAACCTGACTCTAGGCAAGGCCCCCACA
TTCCATCCGACCGCCAAACAAAGTGACGTTCAACCCTTGCTGACACGCGG
GCCTAATTGTTACGTTCTGCTACCGGCCGAGCTTCAAGGACAGGGATCCA
TCACCTTCCTGGATGACAACGACCTGGTGTCTGTTGCACCACGAGAATGG
TGTTTAATGCCTGCCAATGAATTACCACCCGCACGTTTCCTAGTCCGGAT
CACAAGTACAAGGAGGAAAATGGATGCATTTGGTAAGGAGTATGTCGCCT
ATGACATCACTGTCAAAAACGGTCTCTTGGCCTGGCAGCTCTGCAAGCGC
TATTCTGACTTTGCCGTCATGCATGAAAGGCTCAATAAACACGAGCAGCA
GCAACGGCAACAGCTCCAGCAGCAAGGAGAAGAAACAATTCTTTTACCCC
TTCCTCATCTTCCATCGAAGCTCTTTCAGGCCGTCCAAGGCAGGAAAGAA
CGCCTCGAAGTCTACCTTCAGCAAGTGGTGGATCGACCGTTCTCAAGGGA
AAATCCTCATGTGCTAGCCTTCCTAGGCATCCTATCATCTATGAGTGCCA
AGCTTTATTCCATCCACACCGACATAAGTAACACTACCAACAACACGTCA
AGGAAAAAACGGCAGATTTTGCACATTTCAGCGTTAGGGAAACCGCTGCA
AATGGGGGATATTGTCTTGTTTCAATGTGCGCATAACATGGCCGGGTTGC
AGCGGAATGTGACGCGGTCCGAGTGGGACCATGTAGCCCTCGTTGTCAAG
AGACAAGACGGCCGTGAGTTCGACTTGCTGGAAAGCACCGCTGACGGTGT
CACGTGTTGGCCTCTTTCTTCTCGTATAAGCGCTTATGCCACCGAGTTCA
CCTCCTACATGGGCATCCGCAAGCTGGAGGGAGAACGAACACCCGCAATG
CAAAAACGATTGCATGCATTCGTCGAGCAAGTAAAGGGTAAGCCATACGG
GTTTCCGCTCGGCGCATTGTTCGCGAGTAAATATGTGGCGCCCACCCAGG
CGATTGCTTCACCTGTGGGTGCTGGGCCAATATCGGAAGGAGATTCTTCT
TCTTCGATCTCCTCCTCCTCCTTCCCTTGTTCCTTCTCGTCTTTTTTATC
TCTCAACGATTTTCGCGGACGCTGGCGGGAACTAGGGACTGCTGCCGTTA
ATGAACTTTTTAAATTGGGCCTGAGAAGTAAAGGAGAAAGGGATAAACAG
GAAGTAGCACCAGCAGTAACAAAAGCAGCTCCAGCAGTAACAAAAGCAGC
ACCAGCAGCTAGCCCCCCCCGACAAGTAAAGAACGCCGCTGAAGAGGAAG
CTCCAGGAAGCTTTTTCTGCAGTAATCTAGTCGCTGCGGCCCTGCGTGAG
ATGGGCGTGCTAAAGGCCGAGAGAAACATAAATTATTTCTTGCCCGGGGC
ATTCACGGCGGGAGGGGAGGTGGATGAGGCAGTGAGGGCAGGATGGAGGT
TTGGAGATGTTATATTGTTGGATGTGTCGGCGCTTGAGATGGGCAAGGCG
TCAATGGTAGAAGATGGTTGAATGGCCCACTTTACGGACCTACCTCTTCT
CGTGCCGTTTCCCCCGTTTCCCCGGACCCCACTTCACCAGCAGCGAGTCC
TTATCCAGCTCCCACCGTCAACCGGATCATCCCTCTTCTCGCCGATAGTC
ATATGTATATATTTACCGGAGAGCACATCAAAAACGCGGGTGGGCGAGGT
CAAGGGCGCCTTGTTTCAAGCCCTAGCTTTAGCACCGGCTGTCACCACCA
CGACTACCAGCGTCCCGGAGTCCCAGAGCAACGAATCATGGTGCAACCTG
ACTCTAGGCAAGGCCCCCACATTCCATCCGACCGCCAAACAAAGTGACGT
TCAACCCTTGCTGACACGCGGGCCTAATTGTTACGTTCTGCTACCGGCCG
AGCTTCAAGGACAGGGATCCATCACCTTCCTGGATGACAACGACCTGGTG
TCTGTTGCACCACGAGAATGGTGTTTAATGCCTGCCAATGAATTACCACC
CGCACGTTTCCTAGTCCGGATCACAAGTACAAGGAGGAAAATGGATGCAT
TTGGTAAGGAGTATGTCGCCTATGACATCACTGTCAAAAACGGTCTCTTG
GCCTGGCAGCTCTGCAAGCGCTATTCTGACTTTGCCGTCATGCATGAAAG
GCTCAATAAACACGAGCAGCAGCAACGGCAACAGCTCCAGCAGCAAGGAG
AAGAAACAATTCTTTTACCCCTTCCTCATCTTCCATCGAAGCTCTTTCAG
GCCGTCCAAGGCAGGAAAGAACGCCTCGAAGTCTACCTTCAGCAAGTGGT
GGATCGACCGTTCTCAAGGGAAAATCCTCATGTGCTAGCCTTCCTAGGCA
TCCTATCATCTATGAGTGCCAAGCTTTATTCCATCCACACCGACATAAGT
AACACTACCAACAACACGTCAAGGAAAAAACGGCAGATTTTGCACATTTC
AGCGTTAGGGAAACCGCTGCAAATGGGGGATATTGTCTTGTTTCAATGTG
CGCATAACATGGCCGGGTTGCAGCGGAATGTGACGCGGTCCGAGTGGGAC
CATGTAGCCCTCGTTGTCAAGAGACAAGACGGCCGTGAGTTCGACTTGCT
GGAAAGCACCGCTGACGGTGTCACGTGTTGGCCTCTTTCTTCTCGTATAA
GCGCTTATGCCACCGAGTTCACCTCCTACATGGGCATCCGCAAGCTGGAG
GGAGAACGAACACCCGCAATGCAAAAACGATTGCATGCATTCGTCGAGCA
AGTAAAGGGTAAGCCATACGGGTTTCCGCTCGGCGCATTGTTCGCGAGTA
AATATGTGGCGCCCACCCAGGCGATTGCTTCACCTGTGGGTGCTGGGCCA
ATATCGGAAGGAGATTCTTCTTCTTCGATCTCCTCCTCCTCCTTCCCTTG
TTCCTTCTCGTCTTTTTTATCTCTCAACGATTTTCGCGGACGCTGGCGGG
AACTAGGGACTGCTGCCGTTAATGAACTTTTTAAATTGGGCCTGAGAAGT
AAAGGAGAAAGGGATAAACAGGAAGTAGCACCAGCAGTAACAAAAGCAGC
TCCAGCAGTAACAAAAGCAGCACCAGCAGCTAGCCCCCCCCGACAAGTAA
AGAACGCCGCTGAAGAGGAAGCTCCAGGAAGCTTTTTCTGCAGTAATCTA
GTCGCTGCGGCCCTGCGTGAGATGGGCGTGCTAAAGGCCGAGAGAAACAT
AAATTATTTCTTGCCCGGGGCATTCACGGCGGGAGGGGAGGTGGATGAGG
CAGTGAGGGCAGGATGGAGGTTTGGAGATGTTATATTGTTGGATGTGTCG
GCGCTTGAGATGGGCAAGGCGTCAATGGTAGAAGATGGTTGA

Synonyms

Publications