jgi.p|Nanoce1779_2|669399, mRNA_3419 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669399
Unique Name	mRNA_3419
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2360
Alignment location	scaffold_6:274788..277413 -

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Properties


Property Name	Value
TranscriptId	669485
Track	FilteredModels2
ProteinId	669399

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:274788..277413 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669399	gene_3419	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669399	mRNA_3419-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3419	CDS_3419	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:274788..277413-
coding sequence from alignment at scaffold_6:274788..277413-

mRNA sequence

>mRNA_3419 ID=mRNA_3419|Name=jgi.p|Nanoce1779_2|669399|organism=Nannochloropsis oceanica|type=mRNA|length=2360bp
GGCAGGGGTTTGTGTTTGTAAGCAAACCAGAGGGAAATAAGAAATTTAAT
TCGCTGCGGATGGAGCTTGATTGCCCTAGCTTGACGGATACGTATTGGTT
CTGAGGGGTATAGAGCTGTTCAGTCTGAGAGAGAATATTTCCTTGGAGCG
GGGTTGTTTAAAGAGTCCAGGATCAAGGACCATCGGACTCCATCCATGTT
ACTGCTGTAGAAGATGGCAACGATTGATTCACTGTCCTGATCTTTGAGAG
TGAGAAAGAAGTATTTTCCATTTTGCTAATCCTCATGATCTACCACTGTA
ACGGAACATTTTGGAATCCTACGGGCGGAGTTAAGACAGCAGGATGCCAC
TTGGGCATTAGGATAAGGACTGACTCACAAGGCTTTCCACAGAGACGAAG
ACGAAACGATCAAACAGTCCATGATCAAACAGTCCTCACCTTTTGATCGT
GAGAAAGATACAGTAAAGCAAGACTGGTTGGGATATCGATGATGACGCGG
CGAGAGATCGTCGGACGGCAAGGCAACAAGAGACGCACTTCAGGAACTAC
AGAAGCTTGCCCCCTCGTAAACTTCACTGCACCATTTTTTTACACCCTCA
TTCGACAAGTGTGGGAGAATAATATTCCAACACTCATGGCAGTAAAGGGT
GTCCTTGACTTCAGCAAAGACGCATACGTCTCGACAATTCTTCACATCCA
TGCTACAGCAGCGACGAGGAATCCGAACGCAACGTGCCGTCGGCGTGCCG
GCACTCCGCTTCTCTTCCAGATGATATGCCTTGCGGGAGAAATTGAACCA
GGCCATATGGTAGATGCGGCTAATATATGTTTTACCTTGGCGGGTCCTAC
GGATTATGCAAGCTGCGTTTTGCATAATGGAGAAGCATGGATTTGAGTGA
TCTCTGGCTCGAGTGCACACGCACCATCTTGTCGGCCTTGTTGCCGATGC
CCAATTTTTGAGGTGCAACTCCAGATCTCACGCCTCAAGGCAGGCCATGT
TCTTGCTACATTCGTCTGCCGGCAAACGCACACGTTGCTTGTGGCAGTGA
CCTACCAATTATCCTCCAAACAGCTGCAGAAAAAAAACACACGGCACAGC
ACGATCATAATTTGCCGACCATGTGTTTCCCAAACCACCTTGAGCCCCGA
ACCCTTCGTGCCCCCCCCCCCCTTCGCCGGCACGTCGACGATTGAGGACG
ACGATGCAGAGGAGCAGTGCAATCGCGGGGTTAAAAGGCAACTCAGGGGA
TCTTCCTTTCTTTTCATATTCTTGACATAAGCTCGAAGACCACTCACACA
ACATGTTACTACATTCCTCTCCCGCACCACTTAGGGACACGGCCCTGAAT
CCCAGCCCGGTACGAGCATCGAAGGACTACCGTCGCGTGCCTTCTTTCCC
CTGCCGAATCCCACGGCCCACCCCGGCGGGTTGCAGATCTACAGGACAAC
AGCAAGTTCTCACCCCTTTCCGTCGCACATACGCACGGGCCAGTGCCCTA
TCGGTACTTTCCCAACAGCAATCTAAGCAGCTTTAGCCGCGGCCACCGTT
GCAGCAGTGAGCCTGGCACATGCCACTTTCAAGGCCTGGTGACATGGACG
TCGATGGCGAATACGGCTGCAAGATGGATGAGCACTCCGGTCCCCGCCTC
GGTGCCGCTCCTGTCCGTCAGCAACACCCTACCCAATCGGCCCCTCCACC
ACTCCACTCTCCCTTGTCGGCGACCTCCCCCGCACGACTTCCCCTTCCAC
CTCTTTCTCTCAAGCCCTTGTCACGTTCTATCTCCAATCCTATCATCACC
GCCAGCAAGCGCACACCCCTCGTACCACGGGCCCCGCTGCGCAAGGGCAA
GTGGACGCCGGAGGAAGAAGTATACGCGCATTACATCATCGACAATTTTA
ACAAGGGCTTGATAAGCTTGACGCGAGGCACTACTCTCCGCTCCTACCTT
TCCGACCGGCTCAATTGTGATCCTATGCGCGTCACCAAAAAGTTCTCTGG
TACCTCCTGCATCGGAAAAAGCGTCTTCTGTCCTTGTGAGCCAACTCCTG
ATAACCTTGACATGACCAAGGTGGTCTCCCTCCGTCTCCTCGAGCTCGAG
GCCGCCTTTCGCGCCAAAATCGACTTCAACGCCCCGATCACCACCCCTGC
CTCCCTCCCGCCCTCTGCCTCCCTCCCGCCCTCCCTCCATTCGATACATC
AGCACCATAACTTGGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGGACACCCACATCACTTGCATCCTCCCCATGCGCACTGGCTACC
TCATCCCCCCTCCCCTCCTCTTCCCCCACCTCCTCCTGCTGCTGCTGCTG
CGGCTGCTGC

protein sequence of jgi.p|Nanoce1779_2|669399

>mRNA_3419-protein ID=mRNA_3419-protein|Name=jgi.p|Nanoce1779_2|669399|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MPLSRPGDMDVDGEYGCKMDEHSGPRLGAAPVRQQHPTQSAPPPLHSPLS
ATSPARLPLPPLSLKPLSRSISNPIITASKRTPLVPRAPLRKGKWTPEEE
VYAHYIIDNFNKGLISLTRGTTLRSYLSDRLNCDPMRVTKKFSGTSCIGK
SVFCPCEPTPDNLDMTKVVSLRLLELEAAFRAKIDFNAPITTPASLPPSA
SLPPSLHSIHQHHNLAQQQQQQQQQQQQQGHPHHLHPPHAHWLPHPPSPP
LPPPPPAAAAAAA

mRNA from alignment at scaffold_6:274788..277413-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3419 ID=mRNA_3419|Name=jgi.p|Nanoce1779_2|669399|organism=Nannochloropsis oceanica|type=mRNA|length=2626bp|location=Sequence derived from alignment at scaffold_6:274788..277413- (Nannochloropsis oceanica)
GGCAGGGGTTTGTGTTTGTAAGCAAACCAGAGGGAAATAAGAAATTTAAT
TCGCTGCGGATGGAGCTTGATTGCCCTAGCTTGACGGATACGTATTGGTT
CTGAGGGGTATAGAGCTGTTCAGTCTGAGAGAGAATATTTCCTTGGAGCG
GGGTTGTTTAAAGAGTCCAGGATCAAGGACCATCGGACTCCATCCATGTT
ACTGCTGTAGAAGATGGCAACGATTGATTCACTGTCCTGATCTTTGAGAG
TGAGAAAGAAGTATTTTCCATTTTGCTAATCCTCATGATCTACCACTGTA
ACGGAACATTTTGGAATCCTACGGGCGGAGTTAAGACAGCAGGATGCCAC
TTGGGCATTAGGATAAGGACTGACTCACAAGGCTTTCCACAGAGACGAAG
ACGAAACGATCAAACAGTCCATGATCAAACAGTCCTCACCTTTTGATCGT
GAGAAAGATACAGTAAAGCAAGACTGGTTGGGATATCGATGATGACGCGG
CGAGAGATCGTCGGACGGCAAGGCAACAAGAGACGCACTTCAGGAACTAC
AGAAGCTTGCCCCCTCGTAAACTTCACTGCACCATTTTTTTACACCCTCA
TTCGACAAGTGTGGGAGAATAATATTCCAACACTCATGGCAGTAAAGGGT
GTCCTTGACTTCAGCAAAGACGCATACGTCTCGACAATTCTTCACATCCA
TGCTACAGCAGCGACGAGGAATCCGAACGCAACGTGCCGTCGGCGTGCCG
GCACTCCGCTTCTCTTCCAGATGATATGCCTTGCGGGAGAAATTGAACCA
GGCCATATGGTAGATGCGGCTAATATATGTTTTACCTTGGCGGGTCCTAC
GGATTATGCAAGCTGCGTTTTGCATAATGGAGAAGCATGGATTTGAGTGA
TCTCTGGCTCGAGTGCACACGCACCATCTTGTCGGCCTTGTTGCCGATGC
CCAATTTTTGAGGTGCAACTCCAGATCTCACGCCTCAAGGCAGGCCATGT
TCTTGCTACATTCGTCTGCCGGCAAACGCACACGTTGCTTGTGGCAGTGA
CCTACCAATTATCCTCCAAACAGCTGCAGAAAAAAAACACACGGCACAGC
ACGATCATAATTTGCCGACCATGTGTTTCCCAAACCACCTTGAGCCCCGA
ACCCTTCGTGCCCCCCCCCCCCTTCGCCGGCACGTCGACGATTGAGGACG
ACGATGCAGAGGAGCAGTGCAATCGCGGGGTTAAAAGGCAACTCAGGGGA
TCTTCCTTTCTTTTCATATTCTTGACATAAGCTCGAAGACCACTCACACA
ACATGTTACTACATTCCTCTCCCGCACCACTTAGGGACACGGCCCTGAAT
CCCAGCCCGGTACGAGCATCGAAGGACTACCGTCGCGTGCCTTCTTTCCC
CTGCCGAATCCCACGGCCCACCCCGGCGGGTTGCAGATCTACAGGACAAC
AGCAAGTTCTCACCCCTTTCCGTCGCACATACGCACGGGCCAGTGCCCTA
TCGGTACTTTCCCAACAGCAATCTAAGCAGCTTTAGCCGCGGCCACCGTT
GCAGCAGTGAGCCTGGCACATGCCACTTTCAAGGCCTGGTGACATGGACG
TCGATGGCGAATACGGCTGCAAGATGGATGAGCACTCCGGTCCCCGCCTC
GGTGCCGCTCCTGTCCGTCAGCAACACCCTACCCAATCGGCCCCTCCACC
ACTCCACTCTCCCTTGTCGGCGACCTCCCCCGCACGACTTCCCCTTCCAC
CTCTTTCTCTCAAGCCCTTGTCACGTTCTATCTCCAATCCTATCATCACC
GCCAGCAAGCGCACACCCCTCGTACCACGGGCCCCGCTGCGCAAGGGCAA
GTGGACGCCGGAGGAAGAAGTATACGCGCATTACATCATCGACAATTTTA
ACAAGGGCTTGATAAGCTTGACGCGAGGTACGCCGGATATGCCAGGTCCA
TGGAAGGGATGCGCGTGGATGTATTGTCATTCCCTCCCTTATTCCTATTT
TATTTACGCCTGTCACTGATATTTTATGCGTTGATTATCTCCGTTTTCCT
CCACCCTCCTCTCCTAAGATCTCACCCTTTTAAGTCGTATGTCCGTCTCT
GTCCAATTAAAGCACTTCTATTGCCAATCAGAAAACGCTGCACCTAAACC
TCCATTCCCTGCCTCCCTCCCTCCCTTGGTCTCCCTCTCCTAGGCACTAC
TCTCCGCTCCTACCTTTCCGACCGGCTCAATTGTGATCCTATGCGCGTCA
CCAAAAAGTTCTCTGGTACCTCCTGCATCGGAAAAAGCGTCTTCTGTCCT
TGTGAGCCAACTCCTGATAACCTTGACATGACCAAGGTGGTCTCCCTCCG
TCTCCTCGAGCTCGAGGCCGCCTTTCGCGCCAAAATCGACTTCAACGCCC
CGATCACCACCCCTGCCTCCCTCCCGCCCTCTGCCTCCCTCCCGCCCTCC
CTCCATTCGATACATCAGCACCATAACTTGGCTCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGGGACACCCACATCACTTGCATCCTCCCC
ATGCGCACTGGCTACCTCATCCCCCCTCCCCTCCTCTTCCCCCACCTCCT
CCTGCTGCTGCTGCTGCGGCTGCTGC

Coding sequence (CDS) from alignment at scaffold_6:274788..277413-

>mRNA_3419 ID=mRNA_3419|Name=jgi.p|Nanoce1779_2|669399|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at scaffold_6:274788..277413- (Nannochloropsis oceanica)
GCACTACTCTCCGCTCCTACCTTTCCGACCGGCTCAATTGTGATCCTATG
CGCGTCACCAAAAAGTTCTCTGGTACCTCCTGCATCGGAAAAAGCGTCTT
CTGTCCTTGTGAGCCAACTCCTGATAACCTTGACATGACCAAGGTGGTCT
CCCTCCGTCTCCTCGAGCTCGAGGCCGCCTTTCGCGCCAAAATCGACTTC
AACGCCCCGATCACCACCCCTGCCTCCCTCCCGCCCTCTGCCTCCCTCCC
GCCCTCCCTCCATTCGATACATCAGCACCATAACTTGGCTCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGACACCCACATCACTTGCAT
CCTCCCCATGCGCACTGGCTACCTCATCCCCCCTCCCCTCCTCTTCCCCC
ACCTCCTCCTGCTGCTGCTGCTGCGGCTGCTATGCCACTTTCAAGGCCTG
GTGACATGGACGTCGATGGCGAATACGGCTGCAAGATGGATGAGCACTCC
GGTCCCCGCCTCGGTGCCGCTCCTGTCCGTCAGCAACACCCTACCCAATC
GGCCCCTCCACCACTCCACTCTCCCTTGTCGGCGACCTCCCCCGCACGAC
TTCCCCTTCCACCTCTTTCTCTCAAGCCCTTGTCACGTTCTATCTCCAAT
CCTATCATCACCGCCAGCAAGCGCACACCCCTCGTACCACGGGCCCCGCT
GCGCAAGGGCAAGTGGACGCCGGAGGAAGAAGTATACGCGCATTACATCA
TCGACAATTTTAACAAGGGCTTGATAAGCTTGACGCGAGGCACTACTCTC
CGCTCCTACCTTTCCGACCGGCTCAATTGTGATCCTATGCGCGTCACCAA
AAAGTTCTCTGGTACCTCCTGCATCGGAAAAAGCGTCTTCTGTCCTTGTG
AGCCAACTCCTGATAACCTTGACATGACCAAGGTGGTCTCCCTCCGTCTC
CTCGAGCTCGAGGCCGCCTTTCGCGCCAAAATCGACTTCAACGCCCCGAT
CACCACCCCTGCCTCCCTCCCGCCCTCTGCCTCCCTCCCGCCCTCCCTCC
ATTCGATACATCAGCACCATAACTTGGCTCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGGACACCCACATCACTTGCATCCTCCCCATGC
GCACTGGCTACCTCATCCCCCCTCCCCTCCTCTTCCCCCACCTCCTCCTG
CTGCTGCTGCTGCGGCTGCTATGCCACTTTCAAGGCCTGGTGACATGGAC
GTCGATGGCGAATACGGCTGCAAGATGGATGAGCACTCCGGTCCCCGCCT
CGGTGCCGCTCCTGTCCGTCAGCAACACCCTACCCAATCGGCCCCTCCAC
CACTCCACTCTCCCTTGTCGGCGACCTCCCCCGCACGACTTCCCCTTCCA
CCTCTTTCTCTCAAGCCCTTGTCACGTTCTATCTCCAATCCTATCATCAC
CGCCAGCAAGCGCACACCCCTCGTACCACGGGCCCCGCTGCGCAAGGGCA
AGTGGACGCCGGAGGAAGAAGTATACGCGCATTACATCATCGACAATTTT
AACAAGGGCTTGATAAGCTTGACGCGAG

Synonyms

Publications