jgi.p|Nanoce1779_2|582031, mRNA_3415 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582031
Unique NamemRNA_3415
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length458
Alignment locationscaffold_6:256277..256734 +

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Properties
Property NameValue
TranscriptId582117
TrackFilteredModels2
ProteinId582031
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:256277..256734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582031gene_3415Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582031mRNA_3415-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3415CDS_3415Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3415 ID=mRNA_3415|Name=jgi.p|Nanoce1779_2|582031|organism=Nannochloropsis oceanica|type=mRNA|length=458bp
GCTGCTGCGTTTTGCCCCGCGAACCCGCTTGCGCCCGCGCTCCCCGCCTT
CATTGCCTATGCCTTCCCTCTCTTCCTCCTCCTTCTCCACCTCCTCTTCC
TCCTCCTCCCTCTCATTCATGTTCATTTCGTTCTGGTTTGCGCACAGTGC
CGTCTGTAACAAGTTTTCTTTTTCGTCGTTGGTTGATGCCATGAATGCGG
CGCGCGTGCCGCCTGTGTGTACGGTGGTGGCAATTGTATGCCCATTAGAT
CAAAGAAAGGTAAGGAAAAACTATCCCCTGTGCTTATCTAGTCTATGATC
AGTGCCAAAGTAGTATGCAGCAAAATCAAAAAGCTAGACAACTCACCACC
AGTCTCCGCTTTCTACGACATTCATCACACCAGTGGGTGAATTATTGGTG
TGAGTAGGTGCCGTTTAAGAGGGAGGGCACACACACACACAACTCAAACA
GAAAAAAT
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protein sequence of jgi.p|Nanoce1779_2|582031

>mRNA_3415-protein ID=mRNA_3415-protein|Name=jgi.p|Nanoce1779_2|582031|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MPSLSSSSFSTSSSSSSLSFMFISFWFAHSAVCNKFSFSSLVDAMNAARV
PPVCTVVAIVCPLDQRKVRKNYPLCLSSL*
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mRNA from alignment at scaffold_6:256277..256734+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3415 ID=mRNA_3415|Name=jgi.p|Nanoce1779_2|582031|organism=Nannochloropsis oceanica|type=mRNA|length=458bp|location=Sequence derived from alignment at scaffold_6:256277..256734+ (Nannochloropsis oceanica)
GCTGCTGCGTTTTGCCCCGCGAACCCGCTTGCGCCCGCGCTCCCCGCCTT
CATTGCCTATGCCTTCCCTCTCTTCCTCCTCCTTCTCCACCTCCTCTTCC
TCCTCCTCCCTCTCATTCATGTTCATTTCGTTCTGGTTTGCGCACAGTGC
CGTCTGTAACAAGTTTTCTTTTTCGTCGTTGGTTGATGCCATGAATGCGG
CGCGCGTGCCGCCTGTGTGTACGGTGGTGGCAATTGTATGCCCATTAGAT
CAAAGAAAGGTAAGGAAAAACTATCCCCTGTGCTTATCTAGTCTATGATC
AGTGCCAAAGTAGTATGCAGCAAAATCAAAAAGCTAGACAACTCACCACC
AGTCTCCGCTTTCTACGACATTCATCACACCAGTGGGTGAATTATTGGTG
TGAGTAGGTGCCGTTTAAGAGGGAGGGCACACACACACACAACTCAAACA
GAAAAAAT
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Coding sequence (CDS) from alignment at scaffold_6:256277..256734+

>mRNA_3415 ID=mRNA_3415|Name=jgi.p|Nanoce1779_2|582031|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_6:256277..256734+ (Nannochloropsis oceanica)
ATGCCTTCCCTCTCTTCCTCCTCCTTCTCCACCTCCTCTTCCTCCTCCTC
CCTCTCATTCATGTTCATTTCGTTCTGGTTTGCGCACAGTGCCGTCTGTA
ACAAGTTTTCTTTTTCGTCGTTGGTTGATGCCATGAATGCGGCGCGCGTG
CCGCCTGTGTGTACGGTGGTGGCAATTGTATGCCCATTAGATCAAAGAAA
GGTAAGGAAAAACTATCCCCTGTGCTTATCTAGTCTATGA
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Synonyms
Publications