jgi.p|Nanoce1779_2|582029, mRNA_3413 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582029
Unique NamemRNA_3413
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_6:251523..252225 +

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Properties
Property NameValue
TranscriptId582115
TrackFilteredModels2
ProteinId582029
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:251523..252225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582029gene_3413Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582029mRNA_3413-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3413CDS_3413Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3413 ID=mRNA_3413|Name=jgi.p|Nanoce1779_2|582029|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
AACGCAGAGAAGGTTTATTCATGTCTTTCGTTTGGTGTCATCACTATTGT
CGTTTCTTCTCCTTCTGCTATTGCTACTCTGCTACTCTGATCCAGACCTC
GTACTTTTGTTGTTCAGTAATGGTGGTGGTAATAGTACTCCAGTTCACCG
GTACCAAAGTCACTCTCCTCTCGTATTCTTCCCTTCGTCCTCTCCATTAT
CCTCCTTTCTCGCCTTGGTTGGCTCCTATGTGCTTCGGACTCTTACTCGG
TCGCCTGTGTGACTTCTGATACATATCAATTGTGCTTCTTACACTAAACT
CTTACTTTTTATTCTCTATTTGTTTCTCAGTCTTTCTTTCGGTATCTCGC
CCACTCGTCGTTCTTGTCTCCTCTTATAAGTGGTGGTCCGCTTCCTCTCG
ATGTGGTTTTCTCTACTTGAATTGTCTTAGTCGCCCATTTTGCTATTCTC
GTCCTTTGTGACCGTCATTACCCGTCTCCATCCTGCTTCTATTCCAAATA
GCTTCTCTTCCGTTTCAATCTTTAATTCGACGACCCCCCACGCTTGCAAA
CACAGATACAAAAAATACGAACACAAATGGAGTCATTTACATGTTCCTCT
CTCCGTCCCTCTCTTCCTCCCTCCCTGCCTCCTCTACTCCCTAATCTCTA
TACCACAACTTCAACCTCCCCACCACCAACCCTCCTTCCGAGTCCTCCCT
CCC
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protein sequence of jgi.p|Nanoce1779_2|582029

>mRNA_3413-protein ID=mRNA_3413-protein|Name=jgi.p|Nanoce1779_2|582029|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MSFVWCHHYCRFFSFCYCYSATLIQTSYFCCSVMVVVIVLQFTGTKVTLL
SYSSLRPLHYPPFSPWLAPMCFGLLLGRLCDF*
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mRNA from alignment at scaffold_6:251523..252225+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3413 ID=mRNA_3413|Name=jgi.p|Nanoce1779_2|582029|organism=Nannochloropsis oceanica|type=mRNA|length=703bp|location=Sequence derived from alignment at scaffold_6:251523..252225+ (Nannochloropsis oceanica)
AACGCAGAGAAGGTTTATTCATGTCTTTCGTTTGGTGTCATCACTATTGT
CGTTTCTTCTCCTTCTGCTATTGCTACTCTGCTACTCTGATCCAGACCTC
GTACTTTTGTTGTTCAGTAATGGTGGTGGTAATAGTACTCCAGTTCACCG
GTACCAAAGTCACTCTCCTCTCGTATTCTTCCCTTCGTCCTCTCCATTAT
CCTCCTTTCTCGCCTTGGTTGGCTCCTATGTGCTTCGGACTCTTACTCGG
TCGCCTGTGTGACTTCTGATACATATCAATTGTGCTTCTTACACTAAACT
CTTACTTTTTATTCTCTATTTGTTTCTCAGTCTTTCTTTCGGTATCTCGC
CCACTCGTCGTTCTTGTCTCCTCTTATAAGTGGTGGTCCGCTTCCTCTCG
ATGTGGTTTTCTCTACTTGAATTGTCTTAGTCGCCCATTTTGCTATTCTC
GTCCTTTGTGACCGTCATTACCCGTCTCCATCCTGCTTCTATTCCAAATA
GCTTCTCTTCCGTTTCAATCTTTAATTCGACGACCCCCCACGCTTGCAAA
CACAGATACAAAAAATACGAACACAAATGGAGTCATTTACATGTTCCTCT
CTCCGTCCCTCTCTTCCTCCCTCCCTGCCTCCTCTACTCCCTAATCTCTA
TACCACAACTTCAACCTCCCCACCACCAACCCTCCTTCCGAGTCCTCCCT
CCC
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Coding sequence (CDS) from alignment at scaffold_6:251523..252225+

>mRNA_3413 ID=mRNA_3413|Name=jgi.p|Nanoce1779_2|582029|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_6:251523..252225+ (Nannochloropsis oceanica)
ATGTCTTTCGTTTGGTGTCATCACTATTGTCGTTTCTTCTCCTTCTGCTA
TTGCTACTCTGCTACTCTGATCCAGACCTCGTACTTTTGTTGTTCAGTAA
TGGTGGTGGTAATAGTACTCCAGTTCACCGGTACCAAAGTCACTCTCCTC
TCGTATTCTTCCCTTCGTCCTCTCCATTATCCTCCTTTCTCGCCTTGGTT
GGCTCCTATGTGCTTCGGACTCTTACTCGGTCGCCTGTGTGACTTCTGA
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Synonyms
Publications