jgi.p|Nanoce1779_2|669394, mRNA_3412 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669394
Unique Name	mRNA_3412
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2110
Alignment location	scaffold_6:249281..251542 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669480
Track	FilteredModels2
ProteinId	669394

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:249281..251542 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669394	gene_3412	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669394	mRNA_3412-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3412	CDS_3412	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:249281..251542+
coding sequence from alignment at scaffold_6:249281..251542+

mRNA sequence

>mRNA_3412 ID=mRNA_3412|Name=jgi.p|Nanoce1779_2|669394|organism=Nannochloropsis oceanica|type=mRNA|length=2110bp
AGCGCTCTCTTAGGTCTATCCGAAGGTGTGTGCCTGTGAAGAGATGGTAC
ATGGAGCCAGGGCGTGGGTTTGTGGTCTGTTTCGGAAAAGGGAGTTGACG
CCCCGCTTCGAAGGCAACTCGCTCATCACAAGCAACGGGTCAAGTAAATC
ATTCAAATGCAGTAGCCGCGCACCACACTCACTCAAAACCCACTCCCGTC
GCAAGGACACAGCCGCCTTGCCTGTGTAGCGAGCCGATCCGGCCGCTGGG
ATCCCCTTGCCATCCAGGCCCGAGCCAAATGAAGCTCCGGCAACATCATG
CCAAAGGCATCGTGCTCGTGACGGCAGCCGTTGCCGGGGTATTCTCGATG
CTGGCTACCTACATCGCGGTGGCCAGGAGCCGGAAAGGGAAGCGCATCGG
AAGCTGCAACAAACCTCAAGCTCTGCCACAACAGGAGCAGCCACTGAAGG
GAAGCGAAGACGCGGCCTGCGTGGTGGAGCGGGACCTCAGGAAGCAAAGC
CCCCCCCTCACCGCCGTGCCCCGCGAGGTACTGCAACTCCATACCCTCCG
CCAACTCAACCTCATGGGCAATGCCTTGGTCTCTCTCCCCACAGAGATCG
GCGGTCTGACACAGCTGCGAATTTTGGGGCTGACCGACAATAACCTGACG
GCCTTGCCGGACTCCATTGGTTGCCTCAACGAGCTGGTGGCGTTGTACGT
GACCAACAACAAGCTCACCCACTTCCCACCCAGCATTGGGCAGCTCGCCA
GCCTCCGCAAGTTCCAAGCTTCCTTTAATGCCCTCCAGGCCTTACCCGAA
GAAATGGCGGACATGCGTTCCCTGGAACTCTTCCGCGCTGCGGGGAACCC
AGACCTGGCTTCCATTCCTCCCGCTCTCGCCAAGGCTCCTGCTTTAACCT
GGCTTTCTCTGGGAGGGTCAAAATTCTGCGCCTCCTTCTCCAAGAATGAC
CCGGCATCAGAAGATGAGCAGGAGCAGCATGACGCAGCGTGGTGGTCGGC
GACAACGTCGTCGTCGTCGACGACAGAAGGTCGTAGAAGCAGCAGCAGGA
AGAGCAGTAGCGTCCTTCCTTTGGTCGAACGTCGGTCTTTGACACTCGCA
CAAAAGCTGGGCGATGGTGCATCCGGGGAGGTCTTCCTGTCACAATGGCA
CCCGATCGCTTTTGCCTCGTCTTGCTCCTCCTCCTCCTCCTTTTCCTCCC
TGAAAAACAAGCTGACTCCCGAGAAGCTCAAGAAAAAGACGGAGAAAAAA
AACGAAGCTCAAAAAGTGGCCGTCAAAATCTTCCGCAACGACACCTCGCC
AGACGGCCGCGCCATCGACGAACTTGAAATACTCTGTCTTTTAGAGCATC
CCAATCTTAGCAAAGTCCGCGCTTTGCTCCTAGACGACAACGACGACACC
CTTCCTTCCCTCCCTCCTTCTCGTCCTCGTCCTCCCGTTGGCGTGGTAAT
GGACTTCATCGCCGGCCAGCCTCTCGCGGCCAAGCCCAACCACACAAGCA
TGCTCCGGTGTCGGTGGGAGGAAGGAAAGACCTACCCCCTCCGAGTAGTC
CTGCGCTTGGCCCAGGACGTGACTGGGGCACTACGACACTTGCACGAGAA
GCAGATTTGTCACGGGGATGTGTACGCGCATAATTGTTTGATGGATGAAG
AGGGGAACACGACGCTAGTAGATTATGGGGCGAGTTTCATGTATGGGGGA
GGGGAGGATGGAGGGAGAGGGGGAGGGGAAGGTGGGATGGATTTTGAAAA
ATTGGAGGTGCGAGCGTTTGGGCTCTTGTTGAGAGATTTGATGGAGAGGC
GGCAGCAGCAGCGGCAGCATCAGCCTTGACTCCTGCTGCTGCCCATGTCT
TATTAGAGGGGGTGGTGCAACATTGCACTCTCCCTACGGTGGCGGAGCGA
CCGACGTTCGCTGCGCTGCATGCGCGCTTATCATCATTGGTGATGAGTTG
AGGAGAACAGTGATGCACAAAGTATGCTGTGTGTCTAGGCATGCATTTTG
AATGACCAAGTAAATGCTTGAATGGAAAGAAAAATAAGAAAATTCTAAGT
AAGGGAAAAGGTAAGGGTTAACCCTAACCCTAAGTAAAAGAACGCAGAGA
AGGTTTATTC

protein sequence of jgi.p|Nanoce1779_2|669394

>mRNA_3412-protein ID=mRNA_3412-protein|Name=jgi.p|Nanoce1779_2|669394|organism=Nannochloropsis oceanica|type=polypeptide|length=517bp
MKLRQHHAKGIVLVTAAVAGVFSMLATYIAVARSRKGKRIGSCNKPQALP
QQEQPLKGSEDAACVVERDLRKQSPPLTAVPREVLQLHTLRQLNLMGNAL
VSLPTEIGGLTQLRILGLTDNNLTALPDSIGCLNELVALYVTNNKLTHFP
PSIGQLASLRKFQASFNALQALPEEMADMRSLELFRAAGNPDLASIPPAL
AKAPALTWLSLGGSKFCASFSKNDPASEDEQEQHDAAWWSATTSSSSTTE
GRRSSSRKSSSVLPLVERRSLTLAQKLGDGASGEVFLSQWHPIAFASSCS
SSSSFSSLKNKLTPEKLKKKTEKKNEAQKVAVKIFRNDTSPDGRAIDELE
ILCLLEHPNLSKVRALLLDDNDDTLPSLPPSRPRPPVGVVMDFIAGQPLA
AKPNHTSMLRCRWEEGKTYPLRVVLRLAQDVTGALRHLHEKQICHGDVYA
HNCLMDEEGNTTLVDYGASFMYGGGEDGGRGGGEGGMDFEKLEVRAFGLL
LRDLMERRQQQRQHQP*

mRNA from alignment at scaffold_6:249281..251542+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3412 ID=mRNA_3412|Name=jgi.p|Nanoce1779_2|669394|organism=Nannochloropsis oceanica|type=mRNA|length=2262bp|location=Sequence derived from alignment at scaffold_6:249281..251542+ (Nannochloropsis oceanica)
AGCGCTCTCTTAGGTCTATCCGAAGGTGTGTGCCTGTGAAGAGATGGTAC
ATGGAGCCAGGGCGTGGGTTTGTGGTCTGTTTCGGAAAAGGGAGTTGACG
CCCCGCTTCGAAGGCAACTCGCTCATCACAAGCAACGGGTCAAGTAAATC
ATTCAAATGCAGTAGCCGCGCACCACACTCACTCAAAACCCACTCCCGTC
GCAAGGACACAGCCGCCTTGCCTGTGTAGCGAGCCGATCCGGCCGCTGGG
ATCCCCTTGCCATCCAGGCCCGAGCCAAATGAAGCTCCGGCAACATCATG
CCAAAGGCATCGTGCTCGTGACGGCAGCCGTTGCCGGGGTATTCTCGATG
CTGGCTACCTACATCGCGGTGGCCAGGAGCCGGAAAGGGAAGCGCATCGG
AAGCTGCAACAAACCTCAAGCTCTGCCACAACAGGAGCAGCCACTGAAGG
GAAGCGAAGACGCGGCCTGCGTGGTGGAGCGGGACCTCAGGAAGCAAAGC
CCCCCCCTCACCGCCGTGCCCCGCGAGGTACTGCAACTCCATACCCTCCG
CCAACTCAACCTCATGGGCAATGCCTTGGTCTCTCTCCCCACAGAGATCG
GCGGTCTGACACAGCTGCGAATTTTGGGGCTGACCGACAATAACCTGACG
GCCTTGCCGGACTCCATTGGTTGCCTCAACGAGCTGGTGGCGTTGTACGT
GACCAACAACAAGCTCACCCACTTCCCACCCAGCATTGGGCAGCTCGCCA
GCCTCCGCAAGTTCCAAGCTTCCTTTAATGCCCTCCAGGCCTTACCCGAA
GAAATGGCGGACATGCGTTCCCTGGAACTCTTCCGCGCTGCGGGGAACCC
AGACCTGGCTTCCATTCCTCCCGCTCTCGCCAAGGCTCCTGCTTTAACCT
GGCTTTCTCTGGGAGGGTCAAAATTCTGCGCCTCCTTCTCCAAGAATGAC
CCGGCATCAGAAGATGAGCAGGAGCAGCATGACGCAGCGTGGTGGTCGGC
GACAACGTCGTCGTCGTCGACGACAGAAGGTCGTAGAAGCAGCAGCAGGA
AGAGCAGTAGCGTCCTTCCTTTGGTCGAACGTCGGTCTTTGACACTCGCA
CAAAAGCTGGGCGATGGTGCATCCGGGGAGGTCTTCCTGTCACAATGGCA
CCCGATCGCTTTTGCCTCGTCTTGCTCCTCCTCCTCCTCCTTTTCCTCCC
TGAAAAACAAGCTGACTCCCGAGAAGCTCAAGAAAAAGACGGAGAAAAAA
AACGAAGCTCAAAAAGTGGCCGTCAAAATCTTCCGCAACGACACCTCGCC
AGACGGCCGCGCCATCGACGAACTTGAAATACTCTGTCTTTTAGAGCATC
CCAATCTTAGCAAAGTCCGCGCTTTGCTCCTAGACGACAACGACGACACC
CTTCCTTCCCTCCCTCCTTCTCGTCCTCGTCCTCCCGTTGGCGTGGTAAT
GGACTTCATCGCCGGCCAGCCTCTCGCGGCCAAGCCCAACCACACAAGCA
TGCTCCGGTGTCGGTGGGAGGAAGGAAAGACCTACCCCCTCCGAGTAGTC
CTGCGCTTGGCCCAGGACGTGACTGGGGCACTACGACACTTGCACGAGAA
GCAGATTTGTCACGGGGATGTGTACGCGCATAATTGTTTGATGGATGAAG
AGGGGAACACGACGCTAGTAGATTATGGGGCGAGTTTCATGTATGGGGGA
GGGGAGGATGGAGGGAGAGGGGGAGGGGAAGGTGGGATGGATTTTGAAAA
ATTGGAGGTGCGAGCGTTTGGGCTCTTGTTGAGAGATTTGATGGAGAGGG
TGAAGGGGAAGGGATGGGGGGAGGAAGAGGGGGGGGGGGGATGGGAAGGG
GCACGATTTCCGGGCGACAGCACTGACGGACAAGACGAAGAAGAGACGGT
CTTCCTCACCCTCTATTTTTTTGTCTCTGTCATCGTCGTTGACACCCGCA
GCGGCAGCAGCAGCGGCAGCATCAGCCTTGACTCCTGCTGCTGCCCATGT
CTTATTAGAGGGGGTGGTGCAACATTGCACTCTCCCTACGGTGGCGGAGC
GACCGACGTTCGCTGCGCTGCATGCGCGCTTATCATCATTGGTGATGAGT
TGAGGAGAACAGTGATGCACAAAGTATGCTGTGTGTCTAGGCATGCATTT
TGAATGACCAAGTAAATGCTTGAATGGAAAGAAAAATAAGAAAATTCTAA
GTAAGGGAAAAGGTAAGGGTTAACCCTAACCCTAAGTAAAAGAACGCAGA
GAAGGTTTATTC

Coding sequence (CDS) from alignment at scaffold_6:249281..251542+

>mRNA_3412 ID=mRNA_3412|Name=jgi.p|Nanoce1779_2|669394|organism=Nannochloropsis oceanica|type=CDS|length=3102bp|location=Sequence derived from alignment at scaffold_6:249281..251542+ (Nannochloropsis oceanica)
ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC
CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA
GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA
CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA
GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG
TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG
GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG
GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA
ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA
CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA
TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC
TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC
GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG
CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC
ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA
GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA
ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG
AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC
TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT
CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA
TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA
ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT
CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC
GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG
GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA
GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG
CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG
CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG
GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG
AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG
TTGAGAGATTTGATGGAGAGGCGGCAGCAGCAGCGGCAGCATCAGCCTTG
AATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAG
CCGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGG
AGCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCC
ACAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGG
AGCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAG
GTACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTT
GGTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGG
GGCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTC
AACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCC
ACCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTA
ATGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAA
CTCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCT
CGCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCT
GCGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAG
CATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGA
AGGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCG
AACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGG
GAGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTC
CTCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGC
TCAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAA
ATCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGA
AATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGC
TCCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCT
CGTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGC
GGCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAA
AGACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGG
GCACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGC
GCATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATG
GGGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGG
GAAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTT
GTTGAGAGATTTGATGGAGAGGCGGCAGCAGCAGCGGCAGCATCAGCCTT
GA

Synonyms

Publications