Properties
| Property Name | Value |
|---|
| TranscriptId | 539314 |
| Track | FilteredModels2 |
| ProteinId | 539228 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:246577..249317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3411 ID=mRNA_3411|Name=jgi.p|Nanoce1779_2|539228|organism=Nannochloropsis oceanica|type=mRNA|length=2431bp
ACAGGCACACACCTTCGGATAGACCTAAGAGAGCGCTAACTAGCCCCAGG
GCCGCGTCAACAAGTGACTAGTGTGAGCCCCGAGGCGTTGCCTACCAGAA
CGCCACCTCAACCCAGACGACACGCACGACACTCAAAATGGCTCAGCCAT
TTGCCCACGTCTTCAAACCCCTGAAACTTAAATCTGGGGCCACGCTCCGC
AACCGCGTCGTTATGGGATCCATGCATGTCGGCCTCGAAGACGGCGGTGT
CCTCGGCGGGGGCCTCCATAAACTTGGTGCCTTTTACGCCGAGCGTGCTA
AACACCAAGTTGGCCTCATCGTCACAGGTGGAATCGCGCCGAACAGACAA
GGGAAGCTCTCCCCCTTCGCCGCCAAGCTCACCAACCCACTCGAAGTCCG
CGTGCACCGGCACGTGACCAGCGCTGTGCACTTTGCGGACTCCAATGCCA
AAATTGCCATGCAAATTCTGCATGCGGGGCGGTACGCTTACCACCCTTTC
CTCGTCGCGCCCAGTGCCATTAAGGCCCCCATCGGTCAGTACCCGCCCCG
GGCCTTGACCGAGGCCGAGGTGGAGCAAACGATCAAGGATTATGCGCACT
GCGCGAGTCGTGCACGGGAGGCCGGGTACGATGGCGTGGAGATCATGGGT
TCGGAGGGGTACTTGATAAACCAATTCCTCGTGCAGCACACTAACAAAAG
AACGGACGCATGGGGAGGGGAGTACGAGAATCGAATGCGGTTTCCTGTAG
AGGTGGTCAAGGCCGTTCGGGCGGCGGTGGGAGAGGATTTTATAATTATC
TTTAGGCTGAGTATGCTAGATTTGATTCCGCAGGGATCGGCGTGGGAGGA
GGTGGTAGCTTTGGCGCGAGGGGTAGAGGCAGCAGGGGCGACGATTATCA
ACACCGGCATTGGGTGGCACGAAGCACGGATTCCAACGATTGCTACGTGC
GTGCCTCGGGCAGGGTATGCGTGGGTAACGAAGAAGCTAAAGGAGAGCGC
TGTGTTGGGTATTCCGCTCTGCACCACTAATAGGATTAACATGCCTGAGA
TCGTGGAAGATGTCCTGGCGGGGGGCAGTGCCGACTTGGTCTCCATGGCT
CGGCCTTTTCTCGCAGACCCCGCCATTCTCTCCAAAGCCGCGGCGGGGAA
AGTGGAGGACATCAACACCTGCATCGCCTGTAATCAGGCCTGTCTCGATC
ACACATTCAAGGGCCAACGTGCCTCCTGTTTGGTCAATCCCCGCGCAGGG
TACGAATCGGAACTGACGCTTCCCCCCGTTCTTCCCCCCCAAAAGAAAAA
AGTGGCCGTCGTGGGCGCTGGGCCGGCCGGGCTGGCGTTTGCGACTGCGG
CGGCGGGGAGGGGGCATGACGTGACTCTGTATGAGGGGGAAGGAGAAATT
GGAGGTCAATTCAATATGGCCAAGCTCATTCCTGGGAAGGAGGAATTTCA
TGAGACCATCCGATATTTCGGGCATCAACTGGCAAAGACAGGGGTGAATG
TCCGACTGAACACACGGGTGAACTCGCAGGCATTGATTGATGGAGGATTT
GAGGGAGGGGTGGTGCTGGCCACGGGGGTGTTGCCTCGCGAGGTCAATAT
TCCAGGGATTGATCACGACAAGGTGTTGTCGTATGTGGATGTGTTGAGGA
GGGGGAAGGAAGTGGGGAGGAGGGTGGCAATCATTGGCGCGGGGGGGATT
GGCTTTGATGTAGCGGAATTTCTTTTGCACGACCCGAAGAAAAAGGCGGC
GAGTGTGGACGTGGAGAAATTTTTGAAAATCTGGGGGATTGACGGGGCCA
ATGATCGAAGAGGAGGTTTGTTGGAAGAGGAAGAAAAGGAGGTGCCGCTT
AGGGAGATTTATTTGTTGCAGAGGAAGAAAGGGAAGGTTGGAAAGAGTCT
GGGAAAGACGACGGGCTGGATCCATCGGATGTCGTTGAAAAAGGGGGGGG
TGCATGCCGTCTCGGGGGTAGAATATCAAAAGATTGATGACGAGGGCTTG
CACATCAAAATCAAGGCAACGGGGGAGATAAAGCTCCTGGCGGTCGATAC
CATTGTAACCTGTGCGGGGCAAGAGTCTCTTAGAGAGCTTCAAGAGCCGT
TGACGAAAGCAGGGGTCCCTGTGTTCAGAATTGGAGGGTCGGAGTTGGCG
GCGGAGCTGGATGCGAAGCGCGCGATTGATCAGGGGACGAGGCTGGCGGC
GTGCCTGGAGAATGCCAAGCCTGGGGAGGTGTATTCTGCTCCCATTTCAT
GGGAGGCGAAGATCATGAAGAAGTTGGGGATGATGCAGTAGGACAAAGAT
GAGATAGGTGGAAATGTGTATATAGATAGTAAGGGAGAGAGCGAGCGATT
GATCGAGATTAGGAAGGAGGAGGACAGTGGAGCGCAGAATTAAAAGCCTG
CACTACAAAGAATAAAATCATGGAATTTAAA back to topprotein sequence of jgi.p|Nanoce1779_2|539228 >mRNA_3411-protein ID=mRNA_3411-protein|Name=jgi.p|Nanoce1779_2|539228|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp
MAQPFAHVFKPLKLKSGATLRNRVVMGSMHVGLEDGGVLGGGLHKLGAFY
AERAKHQVGLIVTGGIAPNRQGKLSPFAAKLTNPLEVRVHRHVTSAVHFA
DSNAKIAMQILHAGRYAYHPFLVAPSAIKAPIGQYPPRALTEAEVEQTIK
DYAHCASRAREAGYDGVEIMGSEGYLINQFLVQHTNKRTDAWGGEYENRM
RFPVEVVKAVRAAVGEDFIIIFRLSMLDLIPQGSAWEEVVALARGVEAAG
ATIINTGIGWHEARIPTIATCVPRAGYAWVTKKLKESAVLGIPLCTTNRI
NMPEIVEDVLAGGSADLVSMARPFLADPAILSKAAAGKVEDINTCIACNQ
ACLDHTFKGQRASCLVNPRAGYESELTLPPVLPPQKKKVAVVGAGPAGLA
FATAAAGRGHDVTLYEGEGEIGGQFNMAKLIPGKEEFHETIRYFGHQLAK
TGVNVRLNTRVNSQALIDGGFEGGVVLATGVLPREVNIPGIDHDKVLSYV
DVLRRGKEVGRRVAIIGAGGIGFDVAEFLLHDPKKKAASVDVEKFLKIWG
IDGANDRRGGLLEEEEKEVPLREIYLLQRKKGKVGKSLGKTTGWIHRMSL
KKGGVHAVSGVEYQKIDDEGLHIKIKATGEIKLLAVDTIVTCAGQESLRE
LQEPLTKAGVPVFRIGGSELAAELDAKRAIDQGTRLAACLENAKPGEVYS
APISWEAKIMKKLGMMQ* back to topmRNA from alignment at scaffold_6:246577..249317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3411 ID=mRNA_3411|Name=jgi.p|Nanoce1779_2|539228|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at scaffold_6:246577..249317- (Nannochloropsis oceanica)
ACAGGCACACACCTTCGGATAGACCTAAGAGAGCGCTAACTAGCCCCAGG
GCCGCGTCAACAAGTGACTAGTGTGAGCCCCGAGGCGTTGCCTACCAGAA
CGCCACCTCAACCCAGACGACACGCACGACACTCAAAATGGCTCAGCCAT
TTGCCCACGTCTTCAAACCCCTGAAACTTAAATCTGGGGCCACGCTCCGC
AACCGCGTCGTTATGGGTACGTGCAGGTGTCTTTTTCCTTTGTACTTTAT
GGATTTCACTTCTCCAGATCCTCCGACTTCCATCTGCACCTCCTCTCCAG
TCGCATGATGACACTCGGTAGGCCGCAACGCATTGTTTGATTTGATTATC
TTAACACCTGCCTATCAATTGCGGTCAAGCACTGCGCTATGTTGTTAAGT
CTTACCATCCTCCTCTTCCTCATTCTTCCCATGCGCTACCTCTCGCTCGG
GATCTTCGTCATACCCCGGGCCCATCTCCCGGCTAACCCTCACTGCTCCC
TCCTCCCTCCCCATCCTTTTAAACAGGATCCATGCATGTCGGCCTCGAAG
ACGGCGGTGTCCTCGGCGGGGGCCTCCATAAACTTGGTGCCTTTTACGCC
GAGCGTGCTAAACACCAAGTTGGCCTCATCGTCACAGGTGGAATCGCGCC
GAACAGACAAGGGAAGCTCTCCCCCTTCGCCGCCAAGCTCACCAACCCAC
TCGAAGTCCGCGTGCACCGGCACGTGACCAGCGCTGTGCACTTTGCGGAC
TCCAATGCCAAAATTGCCATGCAAATTCTGCATGCGGGGCGGTACGCTTA
CCACCCTTTCCTCGTCGCGCCCAGTGCCATTAAGGCCCCCATCGGTCAGT
ACCCGCCCCGGGCCTTGACCGAGGCCGAGGTGGAGCAAACGATCAAGGAT
TATGCGCACTGCGCGAGTCGTGCACGGGAGGCCGGGTACGATGGCGTGGA
GATCATGGGTTCGGAGGGGTACTTGATAAACCAATTCCTCGTGCAGCACA
CTAACAAAAGAACGGACGCATGGGGAGGGGAGTACGAGAATCGAATGCGG
TTTCCTGTAGAGGTGGTCAAGGCCGTTCGGGCGGCGGTGGGAGAGGATTT
TATAATTATCTTTAGGCTGAGTATGCTAGATTTGATTCCGCAGGGATCGG
CGTGGGAGGAGGTGGTAGCTTTGGCGCGAGGGGTAGAGGCAGCAGGGGCG
ACGATTATCAACACCGGCATTGGGTGGCACGAAGCACGGATTCCAACGAT
TGCTACGTGCGTGCCTCGGGCAGGGTATGCGTGGGTAACGAAGAAGCTAA
AGGAGAGCGCTGTGTTGGGTATTCCGCTCTGCACCACTAATAGGATTAAC
ATGCCTGAGATCGTGGAAGATGTCCTGGCGGGGGGCAGTGCCGACTTGGT
CTCCATGGCTCGGCCTTTTCTCGCAGACCCCGCCATTCTCTCCAAAGCCG
CGGCGGGGAAAGTGGAGGACATCAACACCTGCATCGCCTGTAATCAGGCC
TGTCTCGATCACACATTCAAGGGCCAACGTGCCTCCTGTTTGGTCAATCC
CCGCGCAGGGTACGAATCGGAACTGACGCTTCCCCCCGTTCTTCCCCCCC
AAAAGAAAAAAGTGGCCGTCGTGGGCGCTGGGCCGGCCGGGCTGGCGTTT
GCGACTGCGGCGGCGGGGAGGGGGCATGACGTGACTCTGTATGAGGGGGA
AGGAGAAATTGGAGGTCAATTCAATATGGCCAAGCTCATTCCTGGGAAGG
AGGAATTTCATGAGACCATCCGATATTTCGGGCATCAACTGGCAAAGACA
GGGGTGAATGTCCGACTGAACACACGGGTGAACTCGCAGGCATTGATTGA
TGGAGGATTTGAGGGAGGGGTGGTGCTGGCCACGGGGGTGTTGCCTCGCG
AGGTCAATATTCCAGGGATTGATCACGACAAGGTGTTGTCGTATGTGGAT
GTGTTGAGGAGGGGGAAGGAAGTGGGGAGGAGGGTGGCAATCATTGGCGC
GGGGGGGATTGGCTTTGATGTAGCGGAATTTCTTTTGCACGACCCGAAGA
AAAAGGCGGCGAGTGTGGACGTGGAGAAATTTTTGAAAATCTGGGGGATT
GACGGGGCCAATGATCGAAGAGGAGGTTTGTTGGAAGAGGAAGAAAAGGA
GGTGCCGCTTAGGGAGATTTATTTGTTGCAGAGGAAGAAAGGGAAGGTTG
GAAAGAGTCTGGGAAAGACGACGGGCTGGATCCATCGGATGTCGTTGAAA
AAGGGGGGGGTGCATGCCGTCTCGGGGGTAGAATATCAAAAGATTGATGA
CGAGGGCTTGCACATCAAAATCAAGGCAACGGGGGAGATAAAGCTCCTGG
CGGTCGATACCATTGTAACCTGTGCGGGGCAAGAGTCTCTTAGAGAGCTT
CAAGAGCCGTTGACGAAAGCAGGGGTCCCTGTGTTCAGAATTGGAGGGTC
GGAGTTGGCGGCGGAGCTGGATGCGAAGCGCGCGATTGATCAGGGGACGA
GGCTGGCGGCGTGCCTGGAGAATGCCAAGCCTGGGGAGGTGTATTCTGCT
CCCATTTCATGGGAGGCGAAGATCATGAAGAAGTTGGGGATGATGCAGTA
GGACAAAGATGAGATAGGTGGAAATGTGTATATAGATAGTAAGGGAGAGA
GCGAGCGATTGATCGAGATTAGGAAGGAGGAGGACAGTGGAGCGCAGAAT
TAAAAGCCTGCACTACAAAGAATAAAATCATGGAATTTAAA back to topCoding sequence (CDS) from alignment at scaffold_6:246577..249317- >mRNA_3411 ID=mRNA_3411|Name=jgi.p|Nanoce1779_2|539228|organism=Nannochloropsis oceanica|type=CDS|length=4308bp|location=Sequence derived from alignment at scaffold_6:246577..249317- (Nannochloropsis oceanica)
GATCCATGCATGTCGGCCTCGAAGACGGCGGTGTCCTCGGCGGGGGCCTC
CATAAACTTGGTGCCTTTTACGCCGAGCGTGCTAAACACCAAGTTGGCCT
CATCGTCACAGGTGGAATCGCGCCGAACAGACAAGGGAAGCTCTCCCCCT
TCGCCGCCAAGCTCACCAACCCACTCGAAGTCCGCGTGCACCGGCACGTG
ACCAGCGCTGTGCACTTTGCGGACTCCAATGCCAAAATTGCCATGCAAAT
TCTGCATGCGGGGCGGTACGCTTACCACCCTTTCCTCGTCGCGCCCAGTG
CCATTAAGGCCCCCATCGGTCAGTACCCGCCCCGGGCCTTGACCGAGGCC
GAGGTGGAGCAAACGATCAAGGATTATGCGCACTGCGCGAGTCGTGCACG
GGAGGCCGGGTACGATGGCGTGGAGATCATGGGTTCGGAGGGGTACTTGA
TAAACCAATTCCTCGTGCAGCACACTAACAAAAGAACGGACGCATGGGGA
GGGGAGTACGAGAATCGAATGCGGTTTCCTGTAGAGGTGGTCAAGGCCGT
TCGGGCGGCGGTGGGAGAGGATTTTATAATTATCTTTAGGCTGAGTATGC
TAGATTTGATTCCGCAGGGATCGGCGTGGGAGGAGGTGGTAGCTTTGGCG
CGAGGGGTAGAGGCAGCAGGGGCGACGATTATCAACACCGGCATTGGGTG
GCACGAAGCACGGATTCCAACGATTGCTACGTGCGTGCCTCGGGCAGGGT
ATGCGTGGGTAACGAAGAAGCTAAAGGAGAGCGCTGTGTTGGGTATTCCG
CTCTGCACCACTAATAGGATTAACATGCCTGAGATCGTGGAAGATGTCCT
GGCGGGGGGCAGTGCCGACTTGGTCTCCATGGCTCGGCCTTTTCTCGCAG
ACCCCGCCATTCTCTCCAAAGCCGCGGCGGGGAAAGTGGAGGACATCAAC
ACCTGCATCGCCTGTAATCAGGCCTGTCTCGATCACACATTCAAGGGCCA
ACGTGCCTCCTGTTTGGTCAATCCCCGCGCAGGGTACGAATCGGAACTGA
CGCTTCCCCCCGTTCTTCCCCCCCAAAAGAAAAAAGTGGCCGTCGTGGGC
GCTGGGCCGGCCGGGCTGGCGTTTGCGACTGCGGCGGCGGGGAGGGGGCA
TGACGTGACTCTGTATGAGGGGGAAGGAGAAATTGGAGGTCAATTCAATA
TGGCCAAGCTCATTCCTGGGAAGGAGGAATTTCATGAGACCATCCGATAT
TTCGGGCATCAACTGGCAAAGACAGGGGTGAATGTCCGACTGAACACACG
GGTGAACTCGCAGGCATTGATTGATGGAGGATTTGAGGGAGGGGTGGTGC
TGGCCACGGGGGTGTTGCCTCGCGAGGTCAATATTCCAGGGATTGATCAC
GACAAGGTGTTGTCGTATGTGGATGTGTTGAGGAGGGGGAAGGAAGTGGG
GAGGAGGGTGGCAATCATTGGCGCGGGGGGGATTGGCTTTGATGTAGCGG
AATTTCTTTTGCACGACCCGAAGAAAAAGGCGGCGAGTGTGGACGTGGAG
AAATTTTTGAAAATCTGGGGGATTGACGGGGCCAATGATCGAAGAGGAGG
TTTGTTGGAAGAGGAAGAAAAGGAGGTGCCGCTTAGGGAGATTTATTTGT
TGCAGAGGAAGAAAGGGAAGGTTGGAAAGAGTCTGGGAAAGACGACGGGC
TGGATCCATCGGATGTCGTTGAAAAAGGGGGGGGTGCATGCCGTCTCGGG
GGTAGAATATCAAAAGATTGATGACGAGGGCTTGCACATCAAAATCAAGG
CAACGGGGGAGATAAAGCTCCTGGCGGTCGATACCATTGTAACCTGTGCG
GGGCAAGAGTCTCTTAGAGAGCTTCAAGAGCCGTTGACGAAAGCAGGGGT
CCCTGTGTTCAGAATTGGAGGGTCGGAGTTGGCGGCGGAGCTGGATGCGA
AGCGCGCGATTGATCAGGGGACGAGGCTGGCGGCGTGCCTGGAGAATGCC
AAGCCTGGGGAGGTGTATTCTGCTCCCATTTCATGGGAGGCGAAGATCAT
GAAGAAGTTGGGGATGATGCAGTAGATGGCTCAGCCATTTGCCCACGTCT
TCAAACCCCTGAAACTTAAATCTGGGGCCACGCTCCGCAACCGCGTCGTT
ATGGGATCCATGCATGTCGGCCTCGAAGACGGCGGTGTCCTCGGCGGGGG
CCTCCATAAACTTGGTGCCTTTTACGCCGAGCGTGCTAAACACCAAGTTG
GCCTCATCGTCACAGGTGGAATCGCGCCGAACAGACAAGGGAAGCTCTCC
CCCTTCGCCGCCAAGCTCACCAACCCACTCGAAGTCCGCGTGCACCGGCA
CGTGACCAGCGCTGTGCACTTTGCGGACTCCAATGCCAAAATTGCCATGC
AAATTCTGCATGCGGGGCGGTACGCTTACCACCCTTTCCTCGTCGCGCCC
AGTGCCATTAAGGCCCCCATCGGTCAGTACCCGCCCCGGGCCTTGACCGA
GGCCGAGGTGGAGCAAACGATCAAGGATTATGCGCACTGCGCGAGTCGTG
CACGGGAGGCCGGGTACGATGGCGTGGAGATCATGGGTTCGGAGGGGTAC
TTGATAAACCAATTCCTCGTGCAGCACACTAACAAAAGAACGGACGCATG
GGGAGGGGAGTACGAGAATCGAATGCGGTTTCCTGTAGAGGTGGTCAAGG
CCGTTCGGGCGGCGGTGGGAGAGGATTTTATAATTATCTTTAGGCTGAGT
ATGCTAGATTTGATTCCGCAGGGATCGGCGTGGGAGGAGGTGGTAGCTTT
GGCGCGAGGGGTAGAGGCAGCAGGGGCGACGATTATCAACACCGGCATTG
GGTGGCACGAAGCACGGATTCCAACGATTGCTACGTGCGTGCCTCGGGCA
GGGTATGCGTGGGTAACGAAGAAGCTAAAGGAGAGCGCTGTGTTGGGTAT
TCCGCTCTGCACCACTAATAGGATTAACATGCCTGAGATCGTGGAAGATG
TCCTGGCGGGGGGCAGTGCCGACTTGGTCTCCATGGCTCGGCCTTTTCTC
GCAGACCCCGCCATTCTCTCCAAAGCCGCGGCGGGGAAAGTGGAGGACAT
CAACACCTGCATCGCCTGTAATCAGGCCTGTCTCGATCACACATTCAAGG
GCCAACGTGCCTCCTGTTTGGTCAATCCCCGCGCAGGGTACGAATCGGAA
CTGACGCTTCCCCCCGTTCTTCCCCCCCAAAAGAAAAAAGTGGCCGTCGT
GGGCGCTGGGCCGGCCGGGCTGGCGTTTGCGACTGCGGCGGCGGGGAGGG
GGCATGACGTGACTCTGTATGAGGGGGAAGGAGAAATTGGAGGTCAATTC
AATATGGCCAAGCTCATTCCTGGGAAGGAGGAATTTCATGAGACCATCCG
ATATTTCGGGCATCAACTGGCAAAGACAGGGGTGAATGTCCGACTGAACA
CACGGGTGAACTCGCAGGCATTGATTGATGGAGGATTTGAGGGAGGGGTG
GTGCTGGCCACGGGGGTGTTGCCTCGCGAGGTCAATATTCCAGGGATTGA
TCACGACAAGGTGTTGTCGTATGTGGATGTGTTGAGGAGGGGGAAGGAAG
TGGGGAGGAGGGTGGCAATCATTGGCGCGGGGGGGATTGGCTTTGATGTA
GCGGAATTTCTTTTGCACGACCCGAAGAAAAAGGCGGCGAGTGTGGACGT
GGAGAAATTTTTGAAAATCTGGGGGATTGACGGGGCCAATGATCGAAGAG
GAGGTTTGTTGGAAGAGGAAGAAAAGGAGGTGCCGCTTAGGGAGATTTAT
TTGTTGCAGAGGAAGAAAGGGAAGGTTGGAAAGAGTCTGGGAAAGACGAC
GGGCTGGATCCATCGGATGTCGTTGAAAAAGGGGGGGGTGCATGCCGTCT
CGGGGGTAGAATATCAAAAGATTGATGACGAGGGCTTGCACATCAAAATC
AAGGCAACGGGGGAGATAAAGCTCCTGGCGGTCGATACCATTGTAACCTG
TGCGGGGCAAGAGTCTCTTAGAGAGCTTCAAGAGCCGTTGACGAAAGCAG
GGGTCCCTGTGTTCAGAATTGGAGGGTCGGAGTTGGCGGCGGAGCTGGAT
GCGAAGCGCGCGATTGATCAGGGGACGAGGCTGGCGGCGTGCCTGGAGAA
TGCCAAGCCTGGGGAGGTGTATTCTGCTCCCATTTCATGGGAGGCGAAGA
TCATGAAGAAGTTGGGGATGATGCAGTAGATGGCTCAGCCATTTGCCCAC
GTCTTCAAACCCCTGAAACTTAAATCTGGGGCCACGCTCCGCAACCGCGT
CGTTATGG back to top
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