jgi.p|Nanoce1779_2|582024, mRNA_3410 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582024
Unique NamemRNA_3410
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_6:245753..246531 +

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Properties
Property NameValue
TranscriptId582110
TrackFilteredModels2
ProteinId582024
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:245753..246531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582024gene_3410Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582024mRNA_3410-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3410CDS_3410Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3410 ID=mRNA_3410|Name=jgi.p|Nanoce1779_2|582024|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
CTCTTCTTCATCCGGGGAAGGCTGCAGAGGTTCCTTCCTTTTGATTTTCT
CGCTTACCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGATGG
CGGTGATGTGGCTTCTGGCTTTTTACCAAGCCTTCCTTGTTGCTGCTCGT
CTTGCTCTTTGCCATGGTTCGAAGGCTCGCGGATATTTGCCAATAAAAAT
GATTATGGCTGTAACACTTGGAAAGATGTACACCTGCGCCTATACGTGCC
TGATGGTAATAGGAGACGTCTTGTTGGGATCGAAAGTATCTAGAAAGTAC
TTTGGGAGAAGTCGTTCTGGTACATATAAGGCTCACTTTGTTGTCCTTGT
TTTTTAAAATTATTTCATTTCACTTCTCAAACCTCCCCTGTATGGAAATA
AAAACCACGGACCACGGCTTGCTCAAAGCGACAGTGAAACATAATGATTT
CGATTGACCGATGGGTTGATTGATTATTCTGTGAAATCGATATTTATCTT
GGTCGAGCATCTTTACTTATCAACATTTCAAAAGGGTCATTGTCGACCAT
TAACAAGTCAGGTGGGGAGAATGCATGGTGGCAGTTTATGAACATGAACA
TAAATGATACTTAATGCGTGAGGTGCGGAC
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protein sequence of jgi.p|Nanoce1779_2|582024

>mRNA_3410-protein ID=mRNA_3410-protein|Name=jgi.p|Nanoce1779_2|582024|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MAVMWLLAFYQAFLVAARLALCHGSKARGYLPIKMIMAVTLGKMYTCAYT
CLMVIGDVLLGSKVSRKYFGRSRSGTYKAHFVVLVF*
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mRNA from alignment at scaffold_6:245753..246531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3410 ID=mRNA_3410|Name=jgi.p|Nanoce1779_2|582024|organism=Nannochloropsis oceanica|type=mRNA|length=779bp|location=Sequence derived from alignment at scaffold_6:245753..246531+ (Nannochloropsis oceanica)
CTCTTCTTCATCCGGGGAAGGCTGCAGAGGTTCCTTCCTTTTGATTTTCT
CGCTTACCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGATGG
CGGTGATGTGGCTTCTGGCTTTTTACCAAGCCTTCCTTGTTGCTGCTCGT
CTTGCTCTTTGCCATGGTTCGAAGGCTCGCGGATATTTGCCAATAAAAAT
GATTATGGCTGTAACACTTGGAAAGATGTACACCTGCGCCTGGAGGGATG
AGATAAGACGAAAGTAGGATTGAGCGTAAGAAGTGCTGAGCGTCATGTCG
TTTTACAGGACAGAGAGGAAAGAAATGAAGTGGGTGCGGCGCTGCCAACC
GTCGGCCAGAGGATGTCACCGCCGAGATACGTCCCTACCTATACGTGCCT
GATGGTAATAGGAGACGTCTTGTTGGGATCGAAAGTATCTAGAAAGTACT
TTGGGAGAAGTCGTTCTGGTACATATAAGGCTCACTTTGTTGTCCTTGTT
TTTTAAAATTATTTCATTTCACTTCTCAAACCTCCCCTGTATGGAAATAA
AAACCACGGACCACGGCTTGCTCAAAGCGACAGTGAAACATAATGATTTC
GATTGACCGATGGGTTGATTGATTATTCTGTGAAATCGATATTTATCTTG
GTCGAGCATCTTTACTTATCAACATTTCAAAAGGGTCATTGTCGACCATT
AACAAGTCAGGTGGGGAGAATGCATGGTGGCAGTTTATGAACATGAACAT
AAATGATACTTAATGCGTGAGGTGCGGAC
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Coding sequence (CDS) from alignment at scaffold_6:245753..246531+

>mRNA_3410 ID=mRNA_3410|Name=jgi.p|Nanoce1779_2|582024|organism=Nannochloropsis oceanica|type=CDS|length=522bp|location=Sequence derived from alignment at scaffold_6:245753..246531+ (Nannochloropsis oceanica)
ATGGCGGTGATGTGGCTTCTGGCTTTTTACCAAGCCTTCCTTGTTGCTGC
TCGTCTTGCTCTTTGCCATGGTTCGAAGGCTCGCGGATATTTGCCAATAA
AAATGATTATGGCTGTAACACTTGGAAAGATGTACACCTGCGCCTATACG
TGCCTGATGGTAATAGGAGACGTCTTGTTGGGATCGAAAGTATCTAGAAA
GTACTTTGGGAGAAGTCGTTCTGGTACATATAAGGCTCACTTTGTTGTCC
TTGTTTTTTAAATGGCGGTGATGTGGCTTCTGGCTTTTTACCAAGCCTTC
CTTGTTGCTGCTCGTCTTGCTCTTTGCCATGGTTCGAAGGCTCGCGGATA
TTTGCCAATAAAAATGATTATGGCTGTAACACTTGGAAAGATGTACACCT
GCGCCTATACGTGCCTGATGGTAATAGGAGACGTCTTGTTGGGATCGAAA
GTATCTAGAAAGTACTTTGGGAGAAGTCGTTCTGGTACATATAAGGCTCA
CTTTGTTGTCCTTGTTTTTTAA
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Synonyms
Publications