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Properties
| Property Name | Value |
|---|
| TranscriptId | 627906 |
| Track | FilteredModels2 |
| ProteinId | 627820 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:839292..841489 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_341 ID=mRNA_341|Name=jgi.p|Nanoce1779_2|627820|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
GGCATTTCTCATGTCCTGAAACTTCACTAATCGCGGTCAGCTCACTCTCC
ATTGCCGGTACAATTGCATATGCTCAGATTCACACGCGAGATGGCAGATG
TCAACGACATCACCGATACCCTCTGGTCCTTCAATCCACCACAACCCGCT
GAGGCGCCCACTTCGCCACGGCCCATCCGCCTGCAGGACATTCCTATGCG
CATCGTCAACCGTCGTCGACGCTCCACTGAAAACTTCGTGTCGCTCTCGA
GGGCCATACTACCCCCACGTCCAGCTTGTAGGCCTTCCCTGTCCGCTGCA
GCGGCCCGCTACGAAACATTTCAGCCTGTTGCTTCTCTCTTACCAGCTGT
GAACGTGGAAGTCCTTCGACAAAAGGCAGACCTTGCCGAGCTGGAGGCAA
AGAGTCAAAGGAGTACGACCCTCAAAGCTTTAGAAGCTAAGCGACGTGCG
GAGCGACAGACAGCCGAGCTAGTCGTGGCAAAGGAACGGCTGGAGCAAGA
CTTGCGACAAGCCACAATCGCCCATCAGAGGCTGACGCATGTCTTTCAGC
GGGTGGTAGAGACCAAACGTAAGGTGGAGGCAAAGCTCAAAAATGAGCAG
CGACAGCAACAACAAAAGCAGGAGGTGGAGGAGGACGAAAAGAAACAGGA
GCAAGCACTGAGGAAAAGAACGACATCTGCCAATCCGACCGCTTCTGCAC
CGCCTTCCCGTGCGACCACCAACGACAACGACGGTGACGACCAAGATGCA
GCACGGGCACAAGATCTACCTCAGGGATTGCATGAGATTCTGGCGCAACG
GGAAGCTGATCTGATGAACCTACAGGTGAAGCTAAAGCGGCAAGGGCAAG
CACGACACACACAGCTCAAGGAATGGGAGGCCGAGTTGCAGGATAAGGAG
GAAAGGGTCCAGCGCGTAGCTGAAAAGCTGCGCAAGCAACGGAGGCACTT
GCAAGTTTGTCATGAGCGATCACAACGGCAGTCGTGGGAGGATAAGGGGC
GCAGATGCCGTGCAGCAAGCAAGTCACCGCGGCGGTCCCTCCCCTCTTCG
CCGCTTAGGGCAAGGCGAGTCCGAGTGGCAGCAGGCATACAGAACCAAGA
TAATCGCAACTCCGCGATAGAGACTGAAGAGGAAAAAGGCGAGGAGAAAA
CAAAACAGCGAGAGCCAGAAGCAGCGGCAGCGGTTGTATCTGTGCAATGG
GAAGGAGCGCCACGTTGTCGGCATTTGCCGCAGTACAGCACCTCCTCAAG
CGCTGTGGATGGCAAGGAAGAAATTGATGTCGCCCTGGACAGCACCATCC
TGCCCCTGTCTGTAACGCAAACCGTCCAAGGCAATAGATTGGTTACGCAA
TATGAGAGGAGTCGTGGCGGTGTAGGAGCGACGACTGATGAGGAAATGAA
AGAACAAAAAGAAACCCGCCTGTTTCGGAATTCAGAAATTATGGCAGCAG
GACCTGCTATTGAAAATTGGGGCCACGAAGAAGGGAGCAAAGGTGACCAT
GACTGTTTGGAAGCAGCAGTCTTTCCAAGTACCGTGGGCTCTAATACCCA
TATTCCTGTTGTACAGCTTGCTCCGCCAGCCATCCCTCAGATTCCGCCAT
CCATAGTCCCACTACAAGTCGCCGTTACTACTGAGTGCAAAAAGATGAAG
GACGAAAATGAATTGGAACCAGCAGGCTCGAAACGGATACCTCGCATCGG
TCAAGGCGAGCGGTTGCAGTGGTTAAGCGCATTTGACGGACGGCTGGCCA
AGAGTATGCGAGAGTTTGAAAAATTGAAAAAATGA back to topprotein sequence of jgi.p|Nanoce1779_2|627820 >mRNA_341-protein ID=mRNA_341-protein|Name=jgi.p|Nanoce1779_2|627820|organism=Nannochloropsis oceanica|type=polypeptide|length=572bp
MLRFTREMADVNDITDTLWSFNPPQPAEAPTSPRPIRLQDIPMRIVNRRR
RSTENFVSLSRAILPPRPACRPSLSAAAARYETFQPVASLLPAVNVEVLR
QKADLAELEAKSQRSTTLKALEAKRRAERQTAELVVAKERLEQDLRQATI
AHQRLTHVFQRVVETKRKVEAKLKNEQRQQQQKQEVEEDEKKQEQALRKR
TTSANPTASAPPSRATTNDNDGDDQDAARAQDLPQGLHEILAQREADLMN
LQVKLKRQGQARHTQLKEWEAELQDKEERVQRVAEKLRKQRRHLQVCHER
SQRQSWEDKGRRCRAASKSPRRSLPSSPLRARRVRVAAGIQNQDNRNSAI
ETEEEKGEEKTKQREPEAAAAVVSVQWEGAPRCRHLPQYSTSSSAVDGKE
EIDVALDSTILPLSVTQTVQGNRLVTQYERSRGGVGATTDEEMKEQKETR
LFRNSEIMAAGPAIENWGHEEGSKGDHDCLEAAVFPSTVGSNTHIPVVQL
APPAIPQIPPSIVPLQVAVTTECKKMKDENELEPAGSKRIPRIGQGERLQ
WLSAFDGRLAKSMREFEKLKK* back to topmRNA from alignment at scaffold_3:839292..841489- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_341 ID=mRNA_341|Name=jgi.p|Nanoce1779_2|627820|organism=Nannochloropsis oceanica|type=mRNA|length=2198bp|location=Sequence derived from alignment at scaffold_3:839292..841489- (Nannochloropsis oceanica)
GGCATTTCTCATGTCCTGAAACTTCACTAATCGCGGTCAGCTCACTCTCC
ATTGCCGGTACAATTGCATATGCTCAGATTCACACGCGAGATGGCAGATG
TCAACGACATCACCGATACCCTCTGGTCCTTCAATCCACCACAACCCGCT
GAGGCGCCCACTTCGCCACGGCCCATCCGCCTGCAGGACATTCCTATGCG
CATCGTCAACCGTCGTCGACGCTCCACTGAAAACTTCGTGTCGCTCTCGA
GGGCCATACTACCCCCACGTCCAGCTTGTAGGCCTTCCCTGTCCGCTGCA
GCGGCCCGCTACGAAACATTTCAGCCTGTTGCTTCTCTCTTACCAGCTGT
GAACGTGGAAGTCCTTCGACAAAAGGCAGACCTTGCCGAGCTGGAGGCAA
AGAGTCAAAGGAGTACGACCCTCAAAGCTTTAGAGTACGTGCTATGTTAT
GAAGAGGCCAAATAGGGAAAGCCTTGTCTCTCGGGAAATTATATTTCAAT
CTTCCCCCTATATCACCTTCATTCCTCCTGTGCCTTCTGTCTTACAAAGA
GATTCTCTTTCTATGATCGTGAATGAGCACAAAATACGCGTCTCATATTG
TCCTTCCCTTTGATCACTGAATAAACATAGAGCTAAGCGACGTGCGGAGC
GACAGACAGCCGAGCTAGTCGTGGCAAAGGAACGGCTGGAGCAAGACTTG
CGACAAGCCACAATCGCCCATCAGAGGCTGACGCATGTCTTTCAGCGGGT
GGTAGAGACCAAACGTAAGGTGGAGGCAAAGCTCAAAAATGAGCAGCGAC
AGCAACAACAAAAGCAGGAGGTGGAGGAGGACGAAAAGAAACAGGAGCAA
GCACTGAGGAAAAGAACGACATCTGCCAATCCGACCGCTTCTGCACCGCC
TTCCCGTGCGACCACCAACGACAACGACGGTGACGACCAAGATGCAGCAC
GGGCACAAGATCTACCTCAGGGATTGCATGAGATTCTGGCGCAACGGGAA
GCTGATCTGATGAACCTACAGGTGAAGCTAAAGCGGCAAGGGCAAGCACG
ACACACACAGCTCAAGGAATGGGAGGCCGAGTTGCAGGATAAGGAGGAAA
GGGTCCAGCGCGTAGCTGAAAAGCTGCGCAAGCAACGGAGGCACTTGCAA
GTTTGTCATGAGCGATCACAACGGCAGTCGTGGGAGGATAAGGGGCGCAG
ATGCCGTGCAGCAAGCAAGTCACCGCGGCGGTCCCTCCCCTCTTCGCCGC
TTAGGGCAAGGCGAGTCCGAGTGGCAGCAGGCATACAGAACCAAGATAAT
CGCAACTCCGCGATAGAGACTGAAGAGGAAAAAGGCGAGGAGAAAACAAA
ACAGCGAGAGCCAGAAGCAGCGGCAGCGGTTGTATCTGTGCAATGGGAAG
GAGCGCCACGTTGTCGGCATTTGCCGCAGTACAGCACCTCCTCAAGCGCT
GTGGATGGCAAGGAAGAAATTGATGTCGCCCTGGACAGCACCATCCTGCC
CCTGTCTGTAACGCAAACCGTCCAAGGCAATAGATTGGTTACGCAATATG
AGAGGAGTCGTGGCGGTGTAGGAGCGACGACTGATGAGGAAATGAAAGAA
CAAAAAGAAACCCGCCTGTTTCGGAATTCAGAAATTATGGCAGCAGGACC
TGCTATTGAAAATTGGGGCCACGAAGAAGGGAGCAAAGGTGACCATGACT
GTTTGGAAGCAGCAGTCTTTCCAAGTACCGTGGGCTCTAATACCCATATT
CCTGTTGTACAGCTTGCTCCGCCAGCCATCCCTCAGATTCCGCCATCCAT
GTAAGTTATCGTAATCATGTATCTGTCCACTCTCTCCTACCATCTGCATT
TTCTTATACTTCACACGAACATGCAGATGTGGTAGGATTTTCCGAAAAGA
AATGGCCACGACCCTCGATAAGATTCAGCGAGCTAAGCTCCGCGTCACCG
AGACTTGTGCTGTCGTGAAAACGGATGGCCGCACCCGCACTTGCAGCCTA
CCTCTGCCGCCCCCAAGAGTCCCACTACAAGTCGCCGTTACTACTGAGTG
CAAAAAGATGAAGGACGAAAATGAATTGGAACCAGCAGGCTCGAAACGGA
TACCTCGCATCGGTCAAGGCGAGCGGTTGCAGTGGTTAAGCGCATTTGAC
GGACGGCTGGCCAAGAGTATGCGAGAGTTTGAAAAATTGAAAAAATGA back to topCoding sequence (CDS) from alignment at scaffold_3:839292..841489- >mRNA_341 ID=mRNA_341|Name=jgi.p|Nanoce1779_2|627820|organism=Nannochloropsis oceanica|type=CDS|length=5148bp|location=Sequence derived from alignment at scaffold_3:839292..841489- (Nannochloropsis oceanica)
AGTCCCACTACAAGTCGCCGTTACTACTGAGTGCAAAAAGATGAAGGACG
AAAATGAATTGGAACCAGCAGGCTCGAAACGGATACCTCGCATCGGTCAA
GGCGAGCGGTTGCAGTGGTTAAGCGCATTTGACGGACGGCTGGCCAAGAG
TATGCGAGAGTTTGAAAAATTGAAAAAATGAAGCTAAGCGACGTGCGGAG
CGACAGACAGCCGAGCTAGTCGTGGCAAAGGAACGGCTGGAGCAAGACTT
GCGACAAGCCACAATCGCCCATCAGAGGCTGACGCATGTCTTTCAGCGGG
TGGTAGAGACCAAACGTAAGGTGGAGGCAAAGCTCAAAAATGAGCAGCGA
CAGCAACAACAAAAGCAGGAGGTGGAGGAGGACGAAAAGAAACAGGAGCA
AGCACTGAGGAAAAGAACGACATCTGCCAATCCGACCGCTTCTGCACCGC
CTTCCCGTGCGACCACCAACGACAACGACGGTGACGACCAAGATGCAGCA
CGGGCACAAGATCTACCTCAGGGATTGCATGAGATTCTGGCGCAACGGGA
AGCTGATCTGATGAACCTACAGGTGAAGCTAAAGCGGCAAGGGCAAGCAC
GACACACACAGCTCAAGGAATGGGAGGCCGAGTTGCAGGATAAGGAGGAA
AGGGTCCAGCGCGTAGCTGAAAAGCTGCGCAAGCAACGGAGGCACTTGCA
AGTTTGTCATGAGCGATCACAACGGCAGTCGTGGGAGGATAAGGGGCGCA
GATGCCGTGCAGCAAGCAAGTCACCGCGGCGGTCCCTCCCCTCTTCGCCG
CTTAGGGCAAGGCGAGTCCGAGTGGCAGCAGGCATACAGAACCAAGATAA
TCGCAACTCCGCGATAGAGACTGAAGAGGAAAAAGGCGAGGAGAAAACAA
AACAGCGAGAGCCAGAAGCAGCGGCAGCGGTTGTATCTGTGCAATGGGAA
GGAGCGCCACGTTGTCGGCATTTGCCGCAGTACAGCACCTCCTCAAGCGC
TGTGGATGGCAAGGAAGAAATTGATGTCGCCCTGGACAGCACCATCCTGC
CCCTGTCTGTAACGCAAACCGTCCAAGGCAATAGATTGGTTACGCAATAT
GAGAGGAGTCGTGGCGGTGTAGGAGCGACGACTGATGAGGAAATGAAAGA
ACAAAAAGAAACCCGCCTGTTTCGGAATTCAGAAATTATGGCAGCAGGAC
CTGCTATTGAAAATTGGGGCCACGAAGAAGGGAGCAAAGGTGACCATGAC
TGTTTGGAAGCAGCAGTCTTTCCAAGTACCGTGGGCTCTAATACCCATAT
TCCTGTTGTACAGCTTGCTCCGCCAGCCATCCCTCAGATTCCGCCATCCA
TATGCTCAGATTCACACGCGAGATGGCAGATGTCAACGACATCACCGATA
CCCTCTGGTCCTTCAATCCACCACAACCCGCTGAGGCGCCCACTTCGCCA
CGGCCCATCCGCCTGCAGGACATTCCTATGCGCATCGTCAACCGTCGTCG
ACGCTCCACTGAAAACTTCGTGTCGCTCTCGAGGGCCATACTACCCCCAC
GTCCAGCTTGTAGGCCTTCCCTGTCCGCTGCAGCGGCCCGCTACGAAACA
TTTCAGCCTGTTGCTTCTCTCTTACCAGCTGTGAACGTGGAAGTCCTTCG
ACAAAAGGCAGACCTTGCCGAGCTGGAGGCAAAGAGTCAAAGGAGTACGA
CCCTCAAAGCTTTAGAAGTCCCACTACAAGTCGCCGTTACTACTGAGTGC
AAAAAGATGAAGGACGAAAATGAATTGGAACCAGCAGGCTCGAAACGGAT
ACCTCGCATCGGTCAAGGCGAGCGGTTGCAGTGGTTAAGCGCATTTGACG
GACGGCTGGCCAAGAGTATGCGAGAGTTTGAAAAATTGAAAAAATGAAGC
TAAGCGACGTGCGGAGCGACAGACAGCCGAGCTAGTCGTGGCAAAGGAAC
GGCTGGAGCAAGACTTGCGACAAGCCACAATCGCCCATCAGAGGCTGACG
CATGTCTTTCAGCGGGTGGTAGAGACCAAACGTAAGGTGGAGGCAAAGCT
CAAAAATGAGCAGCGACAGCAACAACAAAAGCAGGAGGTGGAGGAGGACG
AAAAGAAACAGGAGCAAGCACTGAGGAAAAGAACGACATCTGCCAATCCG
ACCGCTTCTGCACCGCCTTCCCGTGCGACCACCAACGACAACGACGGTGA
CGACCAAGATGCAGCACGGGCACAAGATCTACCTCAGGGATTGCATGAGA
TTCTGGCGCAACGGGAAGCTGATCTGATGAACCTACAGGTGAAGCTAAAG
CGGCAAGGGCAAGCACGACACACACAGCTCAAGGAATGGGAGGCCGAGTT
GCAGGATAAGGAGGAAAGGGTCCAGCGCGTAGCTGAAAAGCTGCGCAAGC
AACGGAGGCACTTGCAAGTTTGTCATGAGCGATCACAACGGCAGTCGTGG
GAGGATAAGGGGCGCAGATGCCGTGCAGCAAGCAAGTCACCGCGGCGGTC
CCTCCCCTCTTCGCCGCTTAGGGCAAGGCGAGTCCGAGTGGCAGCAGGCA
TACAGAACCAAGATAATCGCAACTCCGCGATAGAGACTGAAGAGGAAAAA
GGCGAGGAGAAAACAAAACAGCGAGAGCCAGAAGCAGCGGCAGCGGTTGT
ATCTGTGCAATGGGAAGGAGCGCCACGTTGTCGGCATTTGCCGCAGTACA
GCACCTCCTCAAGCGCTGTGGATGGCAAGGAAGAAATTGATGTCGCCCTG
GACAGCACCATCCTGCCCCTGTCTGTAACGCAAACCGTCCAAGGCAATAG
ATTGGTTACGCAATATGAGAGGAGTCGTGGCGGTGTAGGAGCGACGACTG
ATGAGGAAATGAAAGAACAAAAAGAAACCCGCCTGTTTCGGAATTCAGAA
ATTATGGCAGCAGGACCTGCTATTGAAAATTGGGGCCACGAAGAAGGGAG
CAAAGGTGACCATGACTGTTTGGAAGCAGCAGTCTTTCCAAGTACCGTGG
GCTCTAATACCCATATTCCTGTTGTACAGCTTGCTCCGCCAGCCATCCCT
CAGATTCCGCCATCCATATGCTCAGATTCACACGCGAGATGGCAGATGTC
AACGACATCACCGATACCCTCTGGTCCTTCAATCCACCACAACCCGCTGA
GGCGCCCACTTCGCCACGGCCCATCCGCCTGCAGGACATTCCTATGCGCA
TCGTCAACCGTCGTCGACGCTCCACTGAAAACTTCGTGTCGCTCTCGAGG
GCCATACTACCCCCACGTCCAGCTTGTAGGCCTTCCCTGTCCGCTGCAGC
GGCCCGCTACGAAACATTTCAGCCTGTTGCTTCTCTCTTACCAGCTGTGA
ACGTGGAAGTCCTTCGACAAAAGGCAGACCTTGCCGAGCTGGAGGCAAAG
AGTCAAAGGAGTACGACCCTCAAAGCTTTAGAAGTCCCACTACAAGTCGC
CGTTACTACTGAGTGCAAAAAGATGAAGGACGAAAATGAATTGGAACCAG
CAGGCTCGAAACGGATACCTCGCATCGGTCAAGGCGAGCGGTTGCAGTGG
TTAAGCGCATTTGACGGACGGCTGGCCAAGAGTATGCGAGAGTTTGAAAA
ATTGAAAAAATGAAGCTAAGCGACGTGCGGAGCGACAGACAGCCGAGCTA
GTCGTGGCAAAGGAACGGCTGGAGCAAGACTTGCGACAAGCCACAATCGC
CCATCAGAGGCTGACGCATGTCTTTCAGCGGGTGGTAGAGACCAAACGTA
AGGTGGAGGCAAAGCTCAAAAATGAGCAGCGACAGCAACAACAAAAGCAG
GAGGTGGAGGAGGACGAAAAGAAACAGGAGCAAGCACTGAGGAAAAGAAC
GACATCTGCCAATCCGACCGCTTCTGCACCGCCTTCCCGTGCGACCACCA
ACGACAACGACGGTGACGACCAAGATGCAGCACGGGCACAAGATCTACCT
CAGGGATTGCATGAGATTCTGGCGCAACGGGAAGCTGATCTGATGAACCT
ACAGGTGAAGCTAAAGCGGCAAGGGCAAGCACGACACACACAGCTCAAGG
AATGGGAGGCCGAGTTGCAGGATAAGGAGGAAAGGGTCCAGCGCGTAGCT
GAAAAGCTGCGCAAGCAACGGAGGCACTTGCAAGTTTGTCATGAGCGATC
ACAACGGCAGTCGTGGGAGGATAAGGGGCGCAGATGCCGTGCAGCAAGCA
AGTCACCGCGGCGGTCCCTCCCCTCTTCGCCGCTTAGGGCAAGGCGAGTC
CGAGTGGCAGCAGGCATACAGAACCAAGATAATCGCAACTCCGCGATAGA
GACTGAAGAGGAAAAAGGCGAGGAGAAAACAAAACAGCGAGAGCCAGAAG
CAGCGGCAGCGGTTGTATCTGTGCAATGGGAAGGAGCGCCACGTTGTCGG
CATTTGCCGCAGTACAGCACCTCCTCAAGCGCTGTGGATGGCAAGGAAGA
AATTGATGTCGCCCTGGACAGCACCATCCTGCCCCTGTCTGTAACGCAAA
CCGTCCAAGGCAATAGATTGGTTACGCAATATGAGAGGAGTCGTGGCGGT
GTAGGAGCGACGACTGATGAGGAAATGAAAGAACAAAAAGAAACCCGCCT
GTTTCGGAATTCAGAAATTATGGCAGCAGGACCTGCTATTGAAAATTGGG
GCCACGAAGAAGGGAGCAAAGGTGACCATGACTGTTTGGAAGCAGCAGTC
TTTCCAAGTACCGTGGGCTCTAATACCCATATTCCTGTTGTACAGCTTGC
TCCGCCAGCCATCCCTCAGATTCCGCCATCCATATGCTCAGATTCACACG
CGAGATGGCAGATGTCAACGACATCACCGATACCCTCTGGTCCTTCAATC
CACCACAACCCGCTGAGGCGCCCACTTCGCCACGGCCCATCCGCCTGCAG
GACATTCCTATGCGCATCGTCAACCGTCGTCGACGCTCCACTGAAAACTT
CGTGTCGCTCTCGAGGGCCATACTACCCCCACGTCCAGCTTGTAGGCCTT
CCCTGTCCGCTGCAGCGGCCCGCTACGAAACATTTCAGCCTGTTGCTTCT
CTCTTACCAGCTGTGAACGTGGAAGTCCTTCGACAAAAGGCAGACCTTGC
CGAGCTGGAGGCAAAGAGTCAAAGGAGTACGACCCTCAAAGCTTTAGA back to top
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