jgi.p|Nanoce1779_2|511210, mRNA_3409 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|511210
Unique NamemRNA_3409
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length462
Alignment locationscaffold_6:244988..245449 -

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Properties
Property NameValue
TranscriptId511296
TrackFilteredModels2
ProteinId511210
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:244988..245449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|511210gene_3409Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3409CDS_3409Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|511210mRNA_3409-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3409 ID=mRNA_3409|Name=jgi.p|Nanoce1779_2|511210|organism=Nannochloropsis oceanica|type=mRNA|length=462bp
CGTGGTGTCGTCTATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAA
AGTCAAGCACTTACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGG
TGGAAGAAGACGCAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAAC
AAAAAGAAGAAGTACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCT
AGCAAAGCAGATTGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGA
AGCGGAATTTTTACCATGATGACATGTGGACGATGAAATATTTAAAGGGA
TTCAATTGGGGGCATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAG
GGAGCAAAAGTTGAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGG
CCTTCGTGGGCTTGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGG
CGGAGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|511210

>mRNA_3409-protein ID=mRNA_3409-protein|Name=jgi.p|Nanoce1779_2|511210|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
RGVVYLSSLPPFMKPAKVKHLLEKFGPITRLYMVEEDAAMRKRRVKGGGN
KKKKYVEGWVEFKEKGLAKQIAEHLNGSLVGGKKRNFYHDDMWTMKYLKG
FNWGHLTEKLAYERRVREQKLRVEMMQAKKENAAFVGLVEKKRELEGMEG
RRRR
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mRNA from alignment at scaffold_6:244988..245449-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3409 ID=mRNA_3409|Name=jgi.p|Nanoce1779_2|511210|organism=Nannochloropsis oceanica|type=mRNA|length=462bp|location=Sequence derived from alignment at scaffold_6:244988..245449- (Nannochloropsis oceanica)
CGTGGTGTCGTCTATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAA
AGTCAAGCACTTACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGG
TGGAAGAAGACGCAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAAC
AAAAAGAAGAAGTACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCT
AGCAAAGCAGATTGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGA
AGCGGAATTTTTACCATGATGACATGTGGACGATGAAATATTTAAAGGGA
TTCAATTGGGGGCATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAG
GGAGCAAAAGTTGAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGG
CCTTCGTGGGCTTGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGG
CGGAGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:244988..245449-

>mRNA_3409 ID=mRNA_3409|Name=jgi.p|Nanoce1779_2|511210|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_6:244988..245449- (Nannochloropsis oceanica)
CGTGGTGTCGTCTATCTCTCCTCCCTTCCTCCCTTCATGAAGCCAGCTAA
AGTCAAGCACTTACTCGAGAAATTCGGGCCGATCACCCGGCTGTACATGG
TGGAAGAAGACGCAGCGATGCGAAAACGAAGGGTCAAAGGCGGGGGAAAC
AAAAAGAAGAAGTACGTGGAAGGGTGGGTGGAATTCAAGGAGAAGGGGCT
AGCAAAGCAGATTGCGGAACATCTGAACGGGTCGTTGGTGGGAGGGAAGA
AGCGGAATTTTTACCATGATGACATGTGGACGATGAAATATTTAAAGGGA
TTCAATTGGGGGCATCTGACAGAGAAATTGGCCTATGAACGGCGGGTGAG
GGAGCAAAAGTTGAGGGTGGAGATGATGCAGGCCAAAAAGGAGAACGCGG
CCTTCGTGGGCTTGGTGGAGAAGAAGAGGGAATTGGAAGGGATGGAGGGG
CGGAGGAGGAGG
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Synonyms
Publications