jgi.p|Nanoce1779_2|552758, mRNA_3408 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|552758
Unique Name	mRNA_3408
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	795
Alignment location	scaffold_6:242460..243254 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	552844
Track	FilteredModels2
ProteinId	552758

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:242460..243254 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552758	gene_3408	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|552758	mRNA_3408-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3408	CDS_3408	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:242460..243254+
coding sequence from alignment at scaffold_6:242460..243254+

mRNA sequence

>mRNA_3408 ID=mRNA_3408|Name=jgi.p|Nanoce1779_2|552758|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACATGTGTGC
CCTCCTTCCAGTCTTCCCCTGTGGGGGACGAGGATGAACAGGAGAAGGGA
AAACAGAGAAGGAGGAATAACAACGACTATCATCACCAGCATCAACACAA
GGATGAGGGAGCCAAGGGGATGGGAATGGAGAAAGAGGAAGCAGAGGATG
GTCAGGCGATGGGCGCGCACAACGAGAGCATGTTTCTTGCCTCCACCGTC
TCAACGATGGGCGAGCCCTCCCTCCCTCCTTCCCGTCCTGTCAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACGACAACAACAAC
GACAACAACAACAACAACCATTATTCCCACCCACACGTCCACCAAGTGCA
ACAGCAGGAGGAGAAATTCGTGCACAGCCATGTCCACCAGCATCATGGCT
CGCACGGACACACACCGATCGGACAAGGGAGAGGAGGAGGGGGGGTGAAG
GAGGGGAGGTGGACGGGGGAGGAGCACGCGGCTTTCCTTGAAGGGTTACA
GTTGTATGGGAAGAGCTGGAAGGAGATCCAGGCCTTGGTCAGGACCAGGA
CCTCGGATCAGATCAGAACACATGCCCAAAAGTATTTCATTAAGATGGGG
AAGAAGCGACAGATGCAGCAGGAGGGGCAGCAGCAGGCGCAGCCGGGGAC
ATTTATAACACTTTAGGGGGGGAATAGGGGGAGAGAGGGTGGGAG

protein sequence of jgi.p|Nanoce1779_2|552758

>mRNA_3408-protein ID=mRNA_3408-protein|Name=jgi.p|Nanoce1779_2|552758|organism=Nannochloropsis oceanica|type=polypeptide|length=199bp
MGMEKEEAEDGQAMGAHNESMFLASTVSTMGEPSLPPSRPVNNNNNNNNN
NNNNDNNNNNNNNNNNNNNNNNNDNNNDNNNNNHYSHPHVHQVQQQEEKF
VHSHVHQHHGSHGHTPIGQGRGGGGVKEGRWTGEEHAAFLEGLQLYGKSW
KEIQALVRTRTSDQIRTHAQKYFIKMGKKRQMQQEGQQQAQPGTFITL*

mRNA from alignment at scaffold_6:242460..243254+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3408 ID=mRNA_3408|Name=jgi.p|Nanoce1779_2|552758|organism=Nannochloropsis oceanica|type=mRNA|length=795bp|location=Sequence derived from alignment at scaffold_6:242460..243254+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACATGTGTGC
CCTCCTTCCAGTCTTCCCCTGTGGGGGACGAGGATGAACAGGAGAAGGGA
AAACAGAGAAGGAGGAATAACAACGACTATCATCACCAGCATCAACACAA
GGATGAGGGAGCCAAGGGGATGGGAATGGAGAAAGAGGAAGCAGAGGATG
GTCAGGCGATGGGCGCGCACAACGAGAGCATGTTTCTTGCCTCCACCGTC
TCAACGATGGGCGAGCCCTCCCTCCCTCCTTCCCGTCCTGTCAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACGACAACAACAAC
GACAACAACAACAACAACCATTATTCCCACCCACACGTCCACCAAGTGCA
ACAGCAGGAGGAGAAATTCGTGCACAGCCATGTCCACCAGCATCATGGCT
CGCACGGACACACACCGATCGGACAAGGGAGAGGAGGAGGGGGGGTGAAG
GAGGGGAGGTGGACGGGGGAGGAGCACGCGGCTTTCCTTGAAGGGTTACA
GTTGTATGGGAAGAGCTGGAAGGAGATCCAGGCCTTGGTCAGGACCAGGA
CCTCGGATCAGATCAGAACACATGCCCAAAAGTATTTCATTAAGATGGGG
AAGAAGCGACAGATGCAGCAGGAGGGGCAGCAGCAGGCGCAGCCGGGGAC
ATTTATAACACTTTAGGGGGGGAATAGGGGGAGAGAGGGTGGGAG

Coding sequence (CDS) from alignment at scaffold_6:242460..243254+

>mRNA_3408 ID=mRNA_3408|Name=jgi.p|Nanoce1779_2|552758|organism=Nannochloropsis oceanica|type=CDS|length=597bp|location=Sequence derived from alignment at scaffold_6:242460..243254+ (Nannochloropsis oceanica)
ATGGGAATGGAGAAAGAGGAAGCAGAGGATGGTCAGGCGATGGGCGCGCA
CAACGAGAGCATGTTTCTTGCCTCCACCGTCTCAACGATGGGCGAGCCCT
CCCTCCCTCCTTCCCGTCCTGTCAACAACAACAACAACAACAACAACAAC
AACAACAACAACGACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACGACAACAACAACGACAACAACAACAACAACC
ATTATTCCCACCCACACGTCCACCAAGTGCAACAGCAGGAGGAGAAATTC
GTGCACAGCCATGTCCACCAGCATCATGGCTCGCACGGACACACACCGAT
CGGACAAGGGAGAGGAGGAGGGGGGGTGAAGGAGGGGAGGTGGACGGGGG
AGGAGCACGCGGCTTTCCTTGAAGGGTTACAGTTGTATGGGAAGAGCTGG
AAGGAGATCCAGGCCTTGGTCAGGACCAGGACCTCGGATCAGATCAGAAC
ACATGCCCAAAAGTATTTCATTAAGATGGGGAAGAAGCGACAGATGCAGC
AGGAGGGGCAGCAGCAGGCGCAGCCGGGGACATTTATAACACTTTAG

Synonyms

Publications