jgi.p|Nanoce1779_2|525903, mRNA_3406 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525903
Unique NamemRNA_3406
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length165
Alignment locationscaffold_6:239890..240054 +

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Properties
Property NameValue
TranscriptId525989
TrackFilteredModels2
ProteinId525903
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:239890..240054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525903gene_3406Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525903mRNA_3406-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3406CDS_3406Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3406 ID=mRNA_3406|Name=jgi.p|Nanoce1779_2|525903|organism=Nannochloropsis oceanica|type=mRNA|length=165bp
ATGCCGCGGCAGCATGTAAGAGAAGGGCGCTGGAGCAAGGAAGAGCACGC
CTTGTTTTTGGAAGGGTACGAGAAGCACGGCCGATCGTGGAAAGACATTG
CTGGCTTGCTGCGCACGAGAAGTTCAGAGCAAGTACGGACGCATGCACAA
AAGCACTTTCAGAAG
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protein sequence of jgi.p|Nanoce1779_2|525903

>mRNA_3406-protein ID=mRNA_3406-protein|Name=jgi.p|Nanoce1779_2|525903|organism=Nannochloropsis oceanica|type=polypeptide|length=55bp
MPRQHVREGRWSKEEHALFLEGYEKHGRSWKDIAGLLRTRSSEQVRTHAQ
KHFQK
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mRNA from alignment at scaffold_6:239890..240054+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3406 ID=mRNA_3406|Name=jgi.p|Nanoce1779_2|525903|organism=Nannochloropsis oceanica|type=mRNA|length=165bp|location=Sequence derived from alignment at scaffold_6:239890..240054+ (Nannochloropsis oceanica)
ATGCCGCGGCAGCATGTAAGAGAAGGGCGCTGGAGCAAGGAAGAGCACGC
CTTGTTTTTGGAAGGGTACGAGAAGCACGGCCGATCGTGGAAAGACATTG
CTGGCTTGCTGCGCACGAGAAGTTCAGAGCAAGTACGGACGCATGCACAA
AAGCACTTTCAGAAG
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Coding sequence (CDS) from alignment at scaffold_6:239890..240054+

>mRNA_3406 ID=mRNA_3406|Name=jgi.p|Nanoce1779_2|525903|organism=Nannochloropsis oceanica|type=CDS|length=165bp|location=Sequence derived from alignment at scaffold_6:239890..240054+ (Nannochloropsis oceanica)
ATGCCGCGGCAGCATGTAAGAGAAGGGCGCTGGAGCAAGGAAGAGCACGC
CTTGTTTTTGGAAGGGTACGAGAAGCACGGCCGATCGTGGAAAGACATTG
CTGGCTTGCTGCGCACGAGAAGTTCAGAGCAAGTACGGACGCATGCACAA
AAGCACTTTCAGAAG
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Synonyms
Publications