jgi.p|Nanoce1779_2|582012, mRNA_3404 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582012
Unique NamemRNA_3404
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1465
Alignment locationscaffold_6:232818..234282 +

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Properties
Property NameValue
TranscriptId582098
TrackFilteredModels2
ProteinId582012
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:232818..234282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582012gene_3404Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582012mRNA_3404-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3404CDS_3404Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3404 ID=mRNA_3404|Name=jgi.p|Nanoce1779_2|582012|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp
GATCTGTTGGATGTTTTATTCACCTTGCCTTGTTTCCCCAAAATAAAGCA
CACACGTACACCACAAAAACAACCGCGGCTCTCGATCTTACGCTCTCCAC
CACACAACAAAGTAACAGTAGAAGCGAAGTATCTCGCGCTCCTCGACACG
CAGCAAAGTCTTCATCTTGCTTATTCCAGATGCCGCGGCCCCTCGTAGCG
TTCCTCTTCCCCTGCTGTTACCTGAGGTCCAGCGCCTTTACCCATTCCGG
GCCTTTCTCCCTGCTACCATCGTTTGGGTCGTCATGCCGCATGTCGTCCA
ACCTCCAGCCCAATCAACCTTGCCACATCCCGGTTCCCGTGGCGGGCACC
ATTTTCATGAGAGCCTCTGGTGACAGCAACGATGCACCCACATTACCAGG
CCTCGTCACCACCGCATGGCTGGCCGCACACATTGATGACGAAGATCTTG
CTATCCTGGATGTGAGAGGAGAAGTTGCCAAGGCCGCGGTAGAGGACGGG
AAGCAATTAACAGAATACAAGGCTTTGTTTGGCGACTACGTGGACGCGCA
CATCCCCCACGCCGCTTTCGTCGATTGGACTAAGGATATTGCCTACACTG
ATGATGCAGGTGTGCCTGTGCAACTCCTCGAGTTAGACGAACTTCGCACC
ACACTAGAGTCTAAAGGAGTGGGACTGCGAAAACGTGTGGTGGTTTACGA
CGGGGGCAACTTACTATTTGCGACGCGCCTGTGGTGGGCTTTGCGTTTGG
CGGGGCATCAGGCCGTCGCTGTGTTGGATGGTGGATATGCCAAATGGCTG
GCGGAGGACCGAAAAATTACAGTAGACGCGCCATGCCCTCTGAAAATAAA
TGAAATGTGGGAGAGTGAGACCGTGGCCACATCTGTCGTTGAATTCGCCG
TCGGTTCTTCCTCTCCTCCCTTTCTCTCCTCCCGTGTGGACGCCGACTTT
GTCTTGAGATCCTGCGTGCAAGCATCTCCAGATGAGATAGATAGAGTGCA
AGTTATCGACGCCCGTAGCCATGATCAGTTCCTGGGAAGGGTGAGTCGTA
GTTTACGTGCTGGTCATATCCCTAAGGCGCGTTCTGTGCCTTACAAAGAC
TTGCTGGCACCCCCAGAAACACACCCCGAGACATCATTATCATATCGGGT
GATGAAATCAAAGGCAGAGTTGGAGGATACATTGCGAGAGGCGGGTGTAA
GTGTGGATGCAGCGACGATGCCTTTAACGTGTGTGTATTGTAATGGTGGC
GTGGCCTCGACAGTGGTTATTTTTGTGTTAAATCAGTTGTTTGGGATGCA
GACCAAGAATTATGATGGATCATGGAATGAGTGGGGAAAGCGGGAGGATC
TGCCTGTGTCAGTAGCTAAGGAAGAATGATTTGATGGGTGCGCAGAAAGA
AGGGAGAGGAAACGAAATGAGGTGGACTAAGCAAAGCCTTAAAAAAATGC
AAGAAATGAAAGAAA
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protein sequence of jgi.p|Nanoce1779_2|582012

>mRNA_3404-protein ID=mRNA_3404-protein|Name=jgi.p|Nanoce1779_2|582012|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MPRPLVAFLFPCCYLRSSAFTHSGPFSLLPSFGSSCRMSSNLQPNQPCHI
PVPVAGTIFMRASGDSNDAPTLPGLVTTAWLAAHIDDEDLAILDVRGEVA
KAAVEDGKQLTEYKALFGDYVDAHIPHAAFVDWTKDIAYTDDAGVPVQLL
ELDELRTTLESKGVGLRKRVVVYDGGNLLFATRLWWALRLAGHQAVAVLD
GGYAKWLAEDRKITVDAPCPLKINEMWESETVATSVVEFAVGSSSPPFLS
SRVDADFVLRSCVQASPDEIDRVQVIDARSHDQFLGRVSRSLRAGHIPKA
RSVPYKDLLAPPETHPETSLSYRVMKSKAELEDTLREAGVSVDAATMPLT
CVYCNGGVASTVVIFVLNQLFGMQTKNYDGSWNEWGKREDLPVSVAKEE*
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mRNA from alignment at scaffold_6:232818..234282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3404 ID=mRNA_3404|Name=jgi.p|Nanoce1779_2|582012|organism=Nannochloropsis oceanica|type=mRNA|length=1465bp|location=Sequence derived from alignment at scaffold_6:232818..234282+ (Nannochloropsis oceanica)
GATCTGTTGGATGTTTTATTCACCTTGCCTTGTTTCCCCAAAATAAAGCA
CACACGTACACCACAAAAACAACCGCGGCTCTCGATCTTACGCTCTCCAC
CACACAACAAAGTAACAGTAGAAGCGAAGTATCTCGCGCTCCTCGACACG
CAGCAAAGTCTTCATCTTGCTTATTCCAGATGCCGCGGCCCCTCGTAGCG
TTCCTCTTCCCCTGCTGTTACCTGAGGTCCAGCGCCTTTACCCATTCCGG
GCCTTTCTCCCTGCTACCATCGTTTGGGTCGTCATGCCGCATGTCGTCCA
ACCTCCAGCCCAATCAACCTTGCCACATCCCGGTTCCCGTGGCGGGCACC
ATTTTCATGAGAGCCTCTGGTGACAGCAACGATGCACCCACATTACCAGG
CCTCGTCACCACCGCATGGCTGGCCGCACACATTGATGACGAAGATCTTG
CTATCCTGGATGTGAGAGGAGAAGTTGCCAAGGCCGCGGTAGAGGACGGG
AAGCAATTAACAGAATACAAGGCTTTGTTTGGCGACTACGTGGACGCGCA
CATCCCCCACGCCGCTTTCGTCGATTGGACTAAGGATATTGCCTACACTG
ATGATGCAGGTGTGCCTGTGCAACTCCTCGAGTTAGACGAACTTCGCACC
ACACTAGAGTCTAAAGGAGTGGGACTGCGAAAACGTGTGGTGGTTTACGA
CGGGGGCAACTTACTATTTGCGACGCGCCTGTGGTGGGCTTTGCGTTTGG
CGGGGCATCAGGCCGTCGCTGTGTTGGATGGTGGATATGCCAAATGGCTG
GCGGAGGACCGAAAAATTACAGTAGACGCGCCATGCCCTCTGAAAATAAA
TGAAATGTGGGAGAGTGAGACCGTGGCCACATCTGTCGTTGAATTCGCCG
TCGGTTCTTCCTCTCCTCCCTTTCTCTCCTCCCGTGTGGACGCCGACTTT
GTCTTGAGATCCTGCGTGCAAGCATCTCCAGATGAGATAGATAGAGTGCA
AGTTATCGACGCCCGTAGCCATGATCAGTTCCTGGGAAGGGTGAGTCGTA
GTTTACGTGCTGGTCATATCCCTAAGGCGCGTTCTGTGCCTTACAAAGAC
TTGCTGGCACCCCCAGAAACACACCCCGAGACATCATTATCATATCGGGT
GATGAAATCAAAGGCAGAGTTGGAGGATACATTGCGAGAGGCGGGTGTAA
GTGTGGATGCAGCGACGATGCCTTTAACGTGTGTGTATTGTAATGGTGGC
GTGGCCTCGACAGTGGTTATTTTTGTGTTAAATCAGTTGTTTGGGATGCA
GACCAAGAATTATGATGGATCATGGAATGAGTGGGGAAAGCGGGAGGATC
TGCCTGTGTCAGTAGCTAAGGAAGAATGATTTGATGGGTGCGCAGAAAGA
AGGGAGAGGAAACGAAATGAGGTGGACTAAGCAAAGCCTTAAAAAAATGC
AAGAAATGAAAGAAA
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Coding sequence (CDS) from alignment at scaffold_6:232818..234282+

>mRNA_3404 ID=mRNA_3404|Name=jgi.p|Nanoce1779_2|582012|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_6:232818..234282+ (Nannochloropsis oceanica)
ATGCCGCGGCCCCTCGTAGCGTTCCTCTTCCCCTGCTGTTACCTGAGGTC
CAGCGCCTTTACCCATTCCGGGCCTTTCTCCCTGCTACCATCGTTTGGGT
CGTCATGCCGCATGTCGTCCAACCTCCAGCCCAATCAACCTTGCCACATC
CCGGTTCCCGTGGCGGGCACCATTTTCATGAGAGCCTCTGGTGACAGCAA
CGATGCACCCACATTACCAGGCCTCGTCACCACCGCATGGCTGGCCGCAC
ACATTGATGACGAAGATCTTGCTATCCTGGATGTGAGAGGAGAAGTTGCC
AAGGCCGCGGTAGAGGACGGGAAGCAATTAACAGAATACAAGGCTTTGTT
TGGCGACTACGTGGACGCGCACATCCCCCACGCCGCTTTCGTCGATTGGA
CTAAGGATATTGCCTACACTGATGATGCAGGTGTGCCTGTGCAACTCCTC
GAGTTAGACGAACTTCGCACCACACTAGAGTCTAAAGGAGTGGGACTGCG
AAAACGTGTGGTGGTTTACGACGGGGGCAACTTACTATTTGCGACGCGCC
TGTGGTGGGCTTTGCGTTTGGCGGGGCATCAGGCCGTCGCTGTGTTGGAT
GGTGGATATGCCAAATGGCTGGCGGAGGACCGAAAAATTACAGTAGACGC
GCCATGCCCTCTGAAAATAAATGAAATGTGGGAGAGTGAGACCGTGGCCA
CATCTGTCGTTGAATTCGCCGTCGGTTCTTCCTCTCCTCCCTTTCTCTCC
TCCCGTGTGGACGCCGACTTTGTCTTGAGATCCTGCGTGCAAGCATCTCC
AGATGAGATAGATAGAGTGCAAGTTATCGACGCCCGTAGCCATGATCAGT
TCCTGGGAAGGGTGAGTCGTAGTTTACGTGCTGGTCATATCCCTAAGGCG
CGTTCTGTGCCTTACAAAGACTTGCTGGCACCCCCAGAAACACACCCCGA
GACATCATTATCATATCGGGTGATGAAATCAAAGGCAGAGTTGGAGGATA
CATTGCGAGAGGCGGGTGTAAGTGTGGATGCAGCGACGATGCCTTTAACG
TGTGTGTATTGTAATGGTGGCGTGGCCTCGACAGTGGTTATTTTTGTGTT
AAATCAGTTGTTTGGGATGCAGACCAAGAATTATGATGGATCATGGAATG
AGTGGGGAAAGCGGGAGGATCTGCCTGTGTCAGTAGCTAAGGAAGAATGA
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Synonyms
Publications