jgi.p|Nanoce1779_2|582009, mRNA_3403 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|582009
Unique NamemRNA_3403
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1261
Alignment locationscaffold_6:230906..232462 -

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Properties
Property NameValue
TranscriptId582095
TrackFilteredModels2
ProteinId582009
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:230906..232462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582009gene_3403Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|582009mRNA_3403-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3403CDS_3403Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3403 ID=mRNA_3403|Name=jgi.p|Nanoce1779_2|582009|organism=Nannochloropsis oceanica|type=mRNA|length=1261bp
ACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAACGGAGGCGGT
GCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGCCCTTGAACG
ATGAGGGAAAATTGTACGTCGGCAACTTGGCGTTTAAGACCACGGAGGAT
GGCCTCCGGGAGGCGTTTGGGAGCCACGGCGAGATCACCTTTGCGCGCGT
CATCAGTGACCGGGATTCCGGCCGCTCCAGGGGCTTCGGCTTCGTGACCT
TCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTCAACGAGACG
GAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCCCCGTGACCC
GAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTGGCCGTGGTC
GTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGTGAAGGGGCC
GCCGCTGCCCCCGAATCCTAAAACTGCATAATCTCTAAAAAGGATGAAAC
GAGAGGAGGTAGCGAGAGGAAGGAGGGATGGTTTGAGTGCCTCTCCTGTA
TGTGAGTTTGCTAGCTGCTCTACGTCCAGTGGTTGACTTGGCAGTAGATT
TGGAGGATGGTCAGGTGTAGGAGCGGAGTCGGTTCTATCTTTCATATCAC
AGTTTTTTGTTTCTAAATGTGTGGAGAGGTGGTAGGTATCAAGTGCGTCA
CACCTCCTTCCCGCCGCCGCTGCTGTTGCTGCCACCACCAGCGTGTCTTC
ACATTACTTGCAAGAGGAATCAATGTGGAAGTGCTGTGGTGGTGTTGGCG
GTGGAAGTGGAGCGGGAAGAGAGGGGGTGCAGGGAGAGGGAATGCCTGCC
AAAGAATGGGCTACAGAAAGGGGGAAAGTTTGGAGGCAAAGAGGACACGA
CTAACGGGAAGGAGGGAGGGAGAAAGAAGAGAGGAAGGTGATGGAGGGAG
GATTGGTACTATGATGAAGAGATGGCAGGAGAGAGCGAGAAGGAGAGAGA
AGTGACGGAGACAGAGAAGGAGATGGACAGCAACTCGCGAAAGCAATGCA
AGGATAAGCACAAGCAGCCCCTTGGAGCACACCATTAAAAACGCGTCCAA
ATTAATCTATGTCGTACACAAAAAGCAGCGATCCAACAGCAGCCACAGCA
GAAGCACCAACAGAAACAACAGCAATAGCAGCAACATACGACAGAAAAGG
AAGACGAGTAAAATCCAAAAAAGCAATAGCAATAGCAACAGCAAACAGCA
GTCTCTGAAAC
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protein sequence of jgi.p|Nanoce1779_2|582009

>mRNA_3403-protein ID=mRNA_3403-protein|Name=jgi.p|Nanoce1779_2|582009|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MSETEAVPDTPVEETPNAEEPLNDEGKLYVGNLAFKTTEDGLREAFGSHG
EITFARVISDRDSGRSRGFGFVTFAEKDEAQLAIDALNETELDGRTIRVN
FAQPRDPNAPRPPRRSYRGRGRGRGFRGGRARGENGGEGAAAAPES*
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mRNA from alignment at scaffold_6:230906..232462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3403 ID=mRNA_3403|Name=jgi.p|Nanoce1779_2|582009|organism=Nannochloropsis oceanica|type=mRNA|length=1557bp|location=Sequence derived from alignment at scaffold_6:230906..232462- (Nannochloropsis oceanica)
ACAGGGTGCCAGCAGCATCAACCAGGAGAGATGTCTGAAACGGAGGCGGT
GCCTGATACCCCGGTGGAGGAGACCCCCAACGCTGAGGAGCCCTTGAACG
ATGTAAGTATTTTATCAAACAAGGAGAGGGGAGGGCGAGGAGCGCAACAC
GCATAGGCATGGCACGAGAAAAAGTGCGAAGGGTTGACCTTTTGTGTGTC
CTTGATAACTTTTCCAACAGGAGGGAAAATTGTACGTCGGCAACTTGGCG
TTTAAGACCACGGAGGATGGCCTCCGGGAGGCGTTTGGGAGCCACGGCGA
GATCACCTTTGCGCGCGTCATCAGTGACCGGGATTCCGGCCGCTCCAGGT
ACGTGTTAAGCTTAAATCATACGTCGAGACAGTGCGCCATTGAGGCCTGA
ATGTCTGATTTCAGTGTGCAGACTCATTTCTTCCTCATGCTTCGTCGCTA
ACTCTCTACTAACCTCCTCCCTCCGATCCACTACTCCACTCCACTCGCAC
CACTCCCTCCCCTCACACGCCAACAGGGGCTTCGGCTTCGTGACCTTCGC
CGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTCAACGAGACGGAGC
TGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCCCCGTGACCCGAAC
GCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTGGCCGTGGTCGTGG
TTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGTGAAGGGGCCGCCG
CTGCCCCCGAATCCTAAAACTGCATAATCTCTAAAAAGGATGAAACGAGA
GGAGGTAGCGAGAGGAAGGAGGGATGGTTTGAGTGCCTCTCCTGTATGTG
AGTTTGCTAGCTGCTCTACGTCCAGTGGTTGACTTGGCAGTAGATTTGGA
GGATGGTCAGGTGTAGGAGCGGAGTCGGTTCTATCTTTCATATCACAGTT
TTTTGTTTCTAAATGTGTGGAGAGGTGGTAGGTATCAAGTGCGTCACACC
TCCTTCCCGCCGCCGCTGCTGTTGCTGCCACCACCAGCGTGTCTTCACAT
TACTTGCAAGAGGAATCAATGTGGAAGTGCTGTGGTGGTGTTGGCGGTGG
AAGTGGAGCGGGAAGAGAGGGGGTGCAGGGAGAGGGAATGCCTGCCAAAG
AATGGGCTACAGAAAGGGGGAAAGTTTGGAGGCAAAGAGGACACGACTAA
CGGGAAGGAGGGAGGGAGAAAGAAGAGAGGAAGGTGATGGAGGGAGGATT
GGTACTATGATGAAGAGATGGCAGGAGAGAGCGAGAAGGAGAGAGAAGTG
ACGGAGACAGAGAAGGAGATGGACAGCAACTCGCGAAAGCAATGCAAGGA
TAAGCACAAGCAGCCCCTTGGAGCACACCATTAAAAACGCGTCCAAATTA
ATCTATGTCGTACACAAAAAGCAGCGATCCAACAGCAGCCACAGCAGAAG
CACCAACAGAAACAACAGCAATAGCAGCAACATACGACAGAAAAGGAAGA
CGAGTAAAATCCAAAAAAGCAATAGCAATAGCAACAGCAAACAGCAGTCT
CTGAAAC
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Coding sequence (CDS) from alignment at scaffold_6:230906..232462-

>mRNA_3403 ID=mRNA_3403|Name=jgi.p|Nanoce1779_2|582009|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_6:230906..232462- (Nannochloropsis oceanica)
GGGCTTCGGCTTCGTGACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTA
TTGACGCGCTCAACGAGACGGAGCTGGACGGACGTACTATCCGGGTGAAC
TTTGCTCAGCCCCGTGACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTA
CAGAGGCCGTGGCCGTGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGG
AGAATGGAGGTGAAGGGGCCGCCGCTGCCCCCGAATCCTAAGAGGGAAAA
TTGTACGTCGGCAACTTGGCGTTTAAGACCACGGAGGATGGCCTCCGGGA
GGCGTTTGGGAGCCACGGCGAGATCACCTTTGCGCGCGTCATCAGTGACC
GGGATTCCGGCCGCTCCAGATGTCTGAAACGGAGGCGGTGCCTGATACCC
CGGTGGAGGAGACCCCCAACGCTGAGGAGCCCTTGAACGATGGGCTTCGG
CTTCGTGACCTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGC
TCAACGAGACGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAG
CCCCGTGACCCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCG
TGGCCGTGGTCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAG
GTGAAGGGGCCGCCGCTGCCCCCGAATCCTAAGAGGGAAAATTGTACGTC
GGCAACTTGGCGTTTAAGACCACGGAGGATGGCCTCCGGGAGGCGTTTGG
GAGCCACGGCGAGATCACCTTTGCGCGCGTCATCAGTGACCGGGATTCCG
GCCGCTCCAGATGTCTGAAACGGAGGCGGTGCCTGATACCCCGGTGGAGG
AGACCCCCAACGCTGAGGAGCCCTTGAACGATGGGCTTCGGCTTCGTGAC
CTTCGCCGAGAAGGATGAGGCGCAGCTGGCTATTGACGCGCTCAACGAGA
CGGAGCTGGACGGACGTACTATCCGGGTGAACTTTGCTCAGCCCCGTGAC
CCGAACGCTCCTCGTCCCCCTCGCCGCAGCTACAGAGGCCGTGGCCGTGG
TCGTGGTTTTCGTGGCGGGCGTGCTCGGGGGGAGAATGGAGGTGAAGGGG
CCGCCGCTGCCCCCGAATCCTAAGAGGGAAAATTGTACGTCGGCAACTTG
GCGTTTAAGACCACGGAGGATGGCCTCCGGGAGGCGTTTGGGAGCCACGG
CGAGATCACCTTTGCGCGCGTCATCAGTGACCGGGATTCCGGCCGCTCCA
GATGTCTGAAACGGAGGCGGTGCCTGATACCCCGGTGGAGGAGACCCCCA
ACGCTGAGGAGCCCTTGAACGAT
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Synonyms
Publications