jgi.p|Nanoce1779_2|359180, mRNA_3401 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|359180
Unique Name	mRNA_3401
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2927
Alignment location	scaffold_6:221546..224472 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	359266
Track	FilteredModels2
ProteinId	359180

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:221546..224472 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|359180	gene_3401	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|359180	mRNA_3401-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3401	CDS_3401	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:221546..224472-
coding sequence from alignment at scaffold_6:221546..224472-

mRNA sequence

>mRNA_3401 ID=mRNA_3401|Name=jgi.p|Nanoce1779_2|359180|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp
GTTCGCCCTTTCTTTGCACCACCATCATCACCTCTTCACAGGAAGTCCTG
ATTTGAAAGCGTCGTCTTCCTTGCATTGCTGTGGCACCTTGCGCAGGGAA
TTTTGTGGCGGGGTACGATTGATCTGAGCGGCCAAGGCGCGTGTATATAC
AGTGCAGGAGCTGCGGCGACCAGAAACGGCTGCAGCAGTATTGCGATCCG
AGATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGCAGCAGCAGCAGCA
GCAGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCAGGAAAAGATATGA
TGCGGTCAGCAAGACAAGTGAAATGTCAACAATGAAAAGCCTCACGTCAT
TCCTTCCCACGGCAAGTGTAGCTATCGTGCTGTTTTGTGCCTTCTTTGCC
TCGCATGTCCCAAGGACTGAGGCCCGTTCGACGCTCTCGGTCTCGGCGAC
AGCAGGAGCAGGAGGAGCGGCCGCACTAGGCAACAATGGAGGACGCGGAT
GGAGTATTTTGCCTTCTGTATTCCAGAAAAGTCAGAAGCAGCAGCAGCAG
CAGCAGGAAATGGAGGACATTACCTTGCCGTCGTGGTGGGGCCGGGTGAT
TGCACGCCGCGGAGGCGCCTTTGGACGCAGCAAGAAGAACGCCGCGGCAG
CCGCAGCTGCAGCTGCCAAGGAGGCCAAGACAGCCGTTGGTGCAGCAGCA
GCGATAGCACGCAAGGATCAAGAGGAGGCTTCGAAGGCCACCACTGCTGT
TGGGGCTGCTGCTGCTGCTGTTGCAAGTGTCTGGGAAAAGAATGGTGCGA
AGCCGGTGGAGCCCGCGGTCTATAGTCGCGATGCTCCTACCCTGTCTTCT
TCCCCCTCTTTCGCTCCTACAACCACTGTGGGAGGGGATGGTGGGCGTCG
CAGCCCACCGGAAATGGACATCGAAGACGACGATGGGGACCTGGTGGAGG
AAGCGGAGGAGGAAAGGGGGAAGGGGAAGGAGGAGGACGTGGAACTCGAG
GAAATTGAGACGGAGGACGCCTTGGTAGGGTTTGCCTCTGGAGGGGGAGG
AGATGACGATGGCGACGATTTGGGTGATGATGGAGAGGGGCATTCTCTAG
GTGTCGGGGGAGGGCGAGGGGGAGGAGCACCTGCTCCTCCCCCCCCGCCG
GAGCGATGGGCTTACCTGGAGGAAATTGATTCGGAGGAGGAGCCAGATTG
GGTGGCGGCATACGCGGCCTTGGAAGAAGGGATCGAGGACCCGCCGGAGG
AGAGGAGGGTTGAGTCAAGGGAGGAGGCCTGGGCTATCCTGCGACAGGCA
TGGGCGAGGGCGGCCATTCCGCCCCCTCCTGCTGCTGCCGCCGTTGGGGG
TGGGAGCAGCAGTAGTGCTATGGACAAAAAGAAGGAGAGCGAGAGGGTCC
ACAAAACTGCAGGCTTCGGCGAGGAAGAAGAAAACGGGGAGGAAGAAGAA
GAATCCGTCGTCATCTCCCCCTTTCACCGTCAATCCAAAGCCGCGGCGCG
TCGTGAGCTGTACCATCACTTTCTCCAGGATTTAAACACCGACACCCGTA
CATTGGGAGGGAAGCATTGGTTGGACCGCGACGCCCTTATCCACCTACGA
GGCACGGCCTTACTCTGTCAACAACCCGAGTATATCGACCTCCTCTCCTC
CCTTGCTCCCACGCGTTCGTTTGCCCGAGGGATGCGCCTGGCCGTGCCGA
CTTCCACGCACGGGATGCAGGAGGCCTTGGCAGCAGCGCTGGCACATTCG
GTCGGCGCGGTATTAATTGTGGCCGACCATCGGCGCATTGCAGCCGTGAG
GCGCATGGCATTGGATGCCGGGGTCCCGAAGAAGTTTTTGGGGGCAGGGA
TGGTGATGGGTGCGTTAATTGAGATGGCAGAGGGGGAAGGGCAGGAGGAG
GGAGGGGAAGGAAAGGAGGAGGGGGTAGACCCACGATCATCGCCGCTGGT
GATCTTCTTGGCTGACAAGGCGAGGCCTTTCCTTCAGAGCAAACAGGTGA
CAGACGCCTTATTTACAGCCCTGGTGTCCAAGGAGAGCACCTCTTTCTTT
CTCCTCTCCTCGGAGTATGACCCTGATTCCCTCCTTCCCCCCCTTCCTCC
CTTGTCGTCCTCTTCTGTGCCTCATCATCACATCCCTCAGCACGGAGGAT
TACTGGCGCCACCACCGCCAACGACCGGTGAAGGAGGTGGGGCAGGAGGG
GAGGGGCTGCCCGACATGAGTTCTCTCTCGGGAGGAGGAGGGGGAGGGGG
AGAGGGAGGGAGAAGTCTGCCTTCTGGAATCCCCATGCCGTGGCCGCCGG
GAATGATGTCTTCGCCTTCATCTCATCAACAGGGAGGAGGGGGAGGGGGA
GGGGGAGGGGCGTTCCCACCCAAGGGGCCTGTGCTGCATGTTCTGATCCG
GCCGAGTATGGTGCCGGCTGCTCCTACGGGAGGGGGGGGTGGAGGAGGAG
CAGCAGCGGCTGGGAACGGAACGGTAGGAGTGCAGGGTCTTTTCCCATCA
AGTGCGTCCTTAGGGGGAGCGTCGGGATTTGCTCCGTTGTTGAAGAAGAC
AGTGGCAGAGTTGGCAGAGCATTTTCATGAGCTGAGTAAGGAGAGGCTGG
TGATGGGGCAGGAGGGGAAGGAGGGAGGGAGGAAGGGGGGGAGGACGGGG
GGGCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGGTAGAGGAGGTGA
GAGGGATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAGCAGAG
GAAGACGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAGGACTC
GTTGACGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATTGGCTC
AGCTCGCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCCACCGC
GCCCTCCAAGCCCACGTGGCACATCAA

protein sequence of jgi.p|Nanoce1779_2|359180

>mRNA_3401-protein ID=mRNA_3401-protein|Name=jgi.p|Nanoce1779_2|359180|organism=Nannochloropsis oceanica|type=polypeptide|length=843bp
MKPQQLEGGSGAAAAAAAAASWKMATNSRKRYDAVSKTSEMSTMKSLTSF
LPTASVAIVLFCAFFASHVPRTEARSTLSVSATAGAGGAAALGNNGGRGW
SILPSVFQKSQKQQQQQQEMEDITLPSWWGRVIARRGGAFGRSKKNAAAA
AAAAAKEAKTAVGAAAAIARKDQEEASKATTAVGAAAAAVASVWEKNGAK
PVEPAVYSRDAPTLSSSPSFAPTTTVGGDGGRRSPPEMDIEDDDGDLVEE
AEEERGKGKEEDVELEEIETEDALVGFASGGGGDDDGDDLGDDGEGHSLG
VGGGRGGGAPAPPPPPERWAYLEEIDSEEEPDWVAAYAALEEGIEDPPEE
RRVESREEAWAILRQAWARAAIPPPPAAAAVGGGSSSSAMDKKKESERVH
KTAGFGEEEENGEEEEESVVISPFHRQSKAAARRELYHHFLQDLNTDTRT
LGGKHWLDRDALIHLRGTALLCQQPEYIDLLSSLAPTRSFARGMRLAVPT
STHGMQEALAAALAHSVGAVLIVADHRRIAAVRRMALDAGVPKKFLGAGM
VMGALIEMAEGEGQEEGGEGKEEGVDPRSSPLVIFLADKARPFLQSKQVT
DALFTALVSKESTSFFLLSSEYDPDSLLPPLPPLSSSSVPHHHIPQHGGL
LAPPPPTTGEGGGAGGEGLPDMSSLSGGGGGGGEGGRSLPSGIPMPWPPG
MMSSPSSHQQGGGGGGGGGAFPPKGPVLHVLIRPSMVPAAPTGGGGGGGA
AAAGNGTVGVQGLFPSSASLGGASGFAPLLKKTVAELAEHFHELSKERLV
MGQEGKEGGRKGGRTGGLSGEKSEEREGGRGGERDGVGEGRR*

mRNA from alignment at scaffold_6:221546..224472-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3401 ID=mRNA_3401|Name=jgi.p|Nanoce1779_2|359180|organism=Nannochloropsis oceanica|type=mRNA|length=2927bp|location=Sequence derived from alignment at scaffold_6:221546..224472- (Nannochloropsis oceanica)
GTTCGCCCTTTCTTTGCACCACCATCATCACCTCTTCACAGGAAGTCCTG
ATTTGAAAGCGTCGTCTTCCTTGCATTGCTGTGGCACCTTGCGCAGGGAA
TTTTGTGGCGGGGTACGATTGATCTGAGCGGCCAAGGCGCGTGTATATAC
AGTGCAGGAGCTGCGGCGACCAGAAACGGCTGCAGCAGTATTGCGATCCG
AGATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGCAGCAGCAGCAGCA
GCAGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCAGGAAAAGATATGA
TGCGGTCAGCAAGACAAGTGAAATGTCAACAATGAAAAGCCTCACGTCAT
TCCTTCCCACGGCAAGTGTAGCTATCGTGCTGTTTTGTGCCTTCTTTGCC
TCGCATGTCCCAAGGACTGAGGCCCGTTCGACGCTCTCGGTCTCGGCGAC
AGCAGGAGCAGGAGGAGCGGCCGCACTAGGCAACAATGGAGGACGCGGAT
GGAGTATTTTGCCTTCTGTATTCCAGAAAAGTCAGAAGCAGCAGCAGCAG
CAGCAGGAAATGGAGGACATTACCTTGCCGTCGTGGTGGGGCCGGGTGAT
TGCACGCCGCGGAGGCGCCTTTGGACGCAGCAAGAAGAACGCCGCGGCAG
CCGCAGCTGCAGCTGCCAAGGAGGCCAAGACAGCCGTTGGTGCAGCAGCA
GCGATAGCACGCAAGGATCAAGAGGAGGCTTCGAAGGCCACCACTGCTGT
TGGGGCTGCTGCTGCTGCTGTTGCAAGTGTCTGGGAAAAGAATGGTGCGA
AGCCGGTGGAGCCCGCGGTCTATAGTCGCGATGCTCCTACCCTGTCTTCT
TCCCCCTCTTTCGCTCCTACAACCACTGTGGGAGGGGATGGTGGGCGTCG
CAGCCCACCGGAAATGGACATCGAAGACGACGATGGGGACCTGGTGGAGG
AAGCGGAGGAGGAAAGGGGGAAGGGGAAGGAGGAGGACGTGGAACTCGAG
GAAATTGAGACGGAGGACGCCTTGGTAGGGTTTGCCTCTGGAGGGGGAGG
AGATGACGATGGCGACGATTTGGGTGATGATGGAGAGGGGCATTCTCTAG
GTGTCGGGGGAGGGCGAGGGGGAGGAGCACCTGCTCCTCCCCCCCCGCCG
GAGCGATGGGCTTACCTGGAGGAAATTGATTCGGAGGAGGAGCCAGATTG
GGTGGCGGCATACGCGGCCTTGGAAGAAGGGATCGAGGACCCGCCGGAGG
AGAGGAGGGTTGAGTCAAGGGAGGAGGCCTGGGCTATCCTGCGACAGGCA
TGGGCGAGGGCGGCCATTCCGCCCCCTCCTGCTGCTGCCGCCGTTGGGGG
TGGGAGCAGCAGTAGTGCTATGGACAAAAAGAAGGAGAGCGAGAGGGTCC
ACAAAACTGCAGGCTTCGGCGAGGAAGAAGAAAACGGGGAGGAAGAAGAA
GAATCCGTCGTCATCTCCCCCTTTCACCGTCAATCCAAAGCCGCGGCGCG
TCGTGAGCTGTACCATCACTTTCTCCAGGATTTAAACACCGACACCCGTA
CATTGGGAGGGAAGCATTGGTTGGACCGCGACGCCCTTATCCACCTACGA
GGCACGGCCTTACTCTGTCAACAACCCGAGTATATCGACCTCCTCTCCTC
CCTTGCTCCCACGCGTTCGTTTGCCCGAGGGATGCGCCTGGCCGTGCCGA
CTTCCACGCACGGGATGCAGGAGGCCTTGGCAGCAGCGCTGGCACATTCG
GTCGGCGCGGTATTAATTGTGGCCGACCATCGGCGCATTGCAGCCGTGAG
GCGCATGGCATTGGATGCCGGGGTCCCGAAGAAGTTTTTGGGGGCAGGGA
TGGTGATGGGTGCGTTAATTGAGATGGCAGAGGGGGAAGGGCAGGAGGAG
GGAGGGGAAGGAAAGGAGGAGGGGGTAGACCCACGATCATCGCCGCTGGT
GATCTTCTTGGCTGACAAGGCGAGGCCTTTCCTTCAGAGCAAACAGGTGA
CAGACGCCTTATTTACAGCCCTGGTGTCCAAGGAGAGCACCTCTTTCTTT
CTCCTCTCCTCGGAGTATGACCCTGATTCCCTCCTTCCCCCCCTTCCTCC
CTTGTCGTCCTCTTCTGTGCCTCATCATCACATCCCTCAGCACGGAGGAT
TACTGGCGCCACCACCGCCAACGACCGGTGAAGGAGGTGGGGCAGGAGGG
GAGGGGCTGCCCGACATGAGTTCTCTCTCGGGAGGAGGAGGGGGAGGGGG
AGAGGGAGGGAGAAGTCTGCCTTCTGGAATCCCCATGCCGTGGCCGCCGG
GAATGATGTCTTCGCCTTCATCTCATCAACAGGGAGGAGGGGGAGGGGGA
GGGGGAGGGGCGTTCCCACCCAAGGGGCCTGTGCTGCATGTTCTGATCCG
GCCGAGTATGGTGCCGGCTGCTCCTACGGGAGGGGGGGGTGGAGGAGGAG
CAGCAGCGGCTGGGAACGGAACGGTAGGAGTGCAGGGTCTTTTCCCATCA
AGTGCGTCCTTAGGGGGAGCGTCGGGATTTGCTCCGTTGTTGAAGAAGAC
AGTGGCAGAGTTGGCAGAGCATTTTCATGAGCTGAGTAAGGAGAGGCTGG
TGATGGGGCAGGAGGGGAAGGAGGGAGGGAGGAAGGGGGGGAGGACGGGG
GGGCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGGTAGAGGAGGTGA
GAGGGATGGAGTCGGGGAAGGAAGAAGATGAGGAGGAGGAAGAAGCAGAG
GAAGACGAGGACGAAGATGAGGACGAGGACGAGGAGGACGATGAGGACTC
GTTGACGCATCGAAGTGATCGGGCCGCGGCCGAGAGCTCCGCATTGGCTC
AGCTCGCCCAGATGCTCGAAACCCTCAATAAAAACGAGAACTTCCACCGC
GCCCTCCAAGCCCACGTGGCACATCAA

Coding sequence (CDS) from alignment at scaffold_6:221546..224472-

>mRNA_3401 ID=mRNA_3401|Name=jgi.p|Nanoce1779_2|359180|organism=Nannochloropsis oceanica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_6:221546..224472- (Nannochloropsis oceanica)
ATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGCAGCAGCAGCAGCAGC
AGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCAGGAAAAGATATGATG
CGGTCAGCAAGACAAGTGAAATGTCAACAATGAAAAGCCTCACGTCATTC
CTTCCCACGGCAAGTGTAGCTATCGTGCTGTTTTGTGCCTTCTTTGCCTC
GCATGTCCCAAGGACTGAGGCCCGTTCGACGCTCTCGGTCTCGGCGACAG
CAGGAGCAGGAGGAGCGGCCGCACTAGGCAACAATGGAGGACGCGGATGG
AGTATTTTGCCTTCTGTATTCCAGAAAAGTCAGAAGCAGCAGCAGCAGCA
GCAGGAAATGGAGGACATTACCTTGCCGTCGTGGTGGGGCCGGGTGATTG
CACGCCGCGGAGGCGCCTTTGGACGCAGCAAGAAGAACGCCGCGGCAGCC
GCAGCTGCAGCTGCCAAGGAGGCCAAGACAGCCGTTGGTGCAGCAGCAGC
GATAGCACGCAAGGATCAAGAGGAGGCTTCGAAGGCCACCACTGCTGTTG
GGGCTGCTGCTGCTGCTGTTGCAAGTGTCTGGGAAAAGAATGGTGCGAAG
CCGGTGGAGCCCGCGGTCTATAGTCGCGATGCTCCTACCCTGTCTTCTTC
CCCCTCTTTCGCTCCTACAACCACTGTGGGAGGGGATGGTGGGCGTCGCA
GCCCACCGGAAATGGACATCGAAGACGACGATGGGGACCTGGTGGAGGAA
GCGGAGGAGGAAAGGGGGAAGGGGAAGGAGGAGGACGTGGAACTCGAGGA
AATTGAGACGGAGGACGCCTTGGTAGGGTTTGCCTCTGGAGGGGGAGGAG
ATGACGATGGCGACGATTTGGGTGATGATGGAGAGGGGCATTCTCTAGGT
GTCGGGGGAGGGCGAGGGGGAGGAGCACCTGCTCCTCCCCCCCCGCCGGA
GCGATGGGCTTACCTGGAGGAAATTGATTCGGAGGAGGAGCCAGATTGGG
TGGCGGCATACGCGGCCTTGGAAGAAGGGATCGAGGACCCGCCGGAGGAG
AGGAGGGTTGAGTCAAGGGAGGAGGCCTGGGCTATCCTGCGACAGGCATG
GGCGAGGGCGGCCATTCCGCCCCCTCCTGCTGCTGCCGCCGTTGGGGGTG
GGAGCAGCAGTAGTGCTATGGACAAAAAGAAGGAGAGCGAGAGGGTCCAC
AAAACTGCAGGCTTCGGCGAGGAAGAAGAAAACGGGGAGGAAGAAGAAGA
ATCCGTCGTCATCTCCCCCTTTCACCGTCAATCCAAAGCCGCGGCGCGTC
GTGAGCTGTACCATCACTTTCTCCAGGATTTAAACACCGACACCCGTACA
TTGGGAGGGAAGCATTGGTTGGACCGCGACGCCCTTATCCACCTACGAGG
CACGGCCTTACTCTGTCAACAACCCGAGTATATCGACCTCCTCTCCTCCC
TTGCTCCCACGCGTTCGTTTGCCCGAGGGATGCGCCTGGCCGTGCCGACT
TCCACGCACGGGATGCAGGAGGCCTTGGCAGCAGCGCTGGCACATTCGGT
CGGCGCGGTATTAATTGTGGCCGACCATCGGCGCATTGCAGCCGTGAGGC
GCATGGCATTGGATGCCGGGGTCCCGAAGAAGTTTTTGGGGGCAGGGATG
GTGATGGGTGCGTTAATTGAGATGGCAGAGGGGGAAGGGCAGGAGGAGGG
AGGGGAAGGAAAGGAGGAGGGGGTAGACCCACGATCATCGCCGCTGGTGA
TCTTCTTGGCTGACAAGGCGAGGCCTTTCCTTCAGAGCAAACAGGTGACA
GACGCCTTATTTACAGCCCTGGTGTCCAAGGAGAGCACCTCTTTCTTTCT
CCTCTCCTCGGAGTATGACCCTGATTCCCTCCTTCCCCCCCTTCCTCCCT
TGTCGTCCTCTTCTGTGCCTCATCATCACATCCCTCAGCACGGAGGATTA
CTGGCGCCACCACCGCCAACGACCGGTGAAGGAGGTGGGGCAGGAGGGGA
GGGGCTGCCCGACATGAGTTCTCTCTCGGGAGGAGGAGGGGGAGGGGGAG
AGGGAGGGAGAAGTCTGCCTTCTGGAATCCCCATGCCGTGGCCGCCGGGA
ATGATGTCTTCGCCTTCATCTCATCAACAGGGAGGAGGGGGAGGGGGAGG
GGGAGGGGCGTTCCCACCCAAGGGGCCTGTGCTGCATGTTCTGATCCGGC
CGAGTATGGTGCCGGCTGCTCCTACGGGAGGGGGGGGTGGAGGAGGAGCA
GCAGCGGCTGGGAACGGAACGGTAGGAGTGCAGGGTCTTTTCCCATCAAG
TGCGTCCTTAGGGGGAGCGTCGGGATTTGCTCCGTTGTTGAAGAAGACAG
TGGCAGAGTTGGCAGAGCATTTTCATGAGCTGAGTAAGGAGAGGCTGGTG
ATGGGGCAGGAGGGGAAGGAGGGAGGGAGGAAGGGGGGGAGGACGGGGGG
GCTGAGTGGAGAGAAGTCGGAGGAGAGGGAGGGGGGTAGAGGAGGTGAGA
GGGATGGAGTCGGGGAAGGAAGAAGATGA

Synonyms

Publications