jgi.p|Nanoce1779_2|577037, mRNA_340 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577037
Unique Name	mRNA_340
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	5147
Alignment location	scaffold_3:833915..839226 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577123
Track	FilteredModels2
ProteinId	577037

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:833915..839226 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577037	gene_340	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577037	mRNA_340-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_340	CDS_340	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:833915..839226+
coding sequence from alignment at scaffold_3:833915..839226+

mRNA sequence

>mRNA_340 ID=mRNA_340|Name=jgi.p|Nanoce1779_2|577037|organism=Nannochloropsis oceanica|type=mRNA|length=5147bp
AGGCATGGCGCTTGGCCAGCAGCAGATGGAGAAGGGTGATCAGATGCTTG
CGCTGGCAGAGGGGGTGGCCAAGGCTGGGGAGGCTTCTACCTTGGGACTC
AAGGAGCGCCTCGCCCTTCTCAATGCTCTCAGCAGCAGTATCACCACCAA
CCGTCGCACCATGCGCCTCATCCCGGAGGATCTAGACCTGGGAGAGGGCT
CCGCGGATGCTCTTTTGCTTCATGTCAACGCAGTGGAGCTCTTGCTGGCA
GCTGGGCGAGAAGAGGTCGGCAGCAATGACGAAGACGCGTGGGGGACCGT
GGTGTCATTGTGGATCGAGAGGGTGGGACTTCCCATTCTTACCTCTCGGC
GTCTGGACCTTGGTCCCGCACAGAATGAAATAGGCATGCGTATAGGTCGT
CTATTGGCATCGACAAGCAGTGAAGCGATACAACAAGCCATGCAGGCAGC
AACATTGCATGTGCTTGACGATATGAGCGTGCGCGTGTCCTGTCCACGGG
CAGACAAAGACGGCGGGGAGCTGCTGGAGGTGATTAGTGCTCAAGCTGGA
TGGGTTGCTTCTTTCTTAAATCAAGGTGCACAAGATGTTGATACATTCCC
ACTTGCTGTACTCGAGCGCACACTTGTAAACTTGGAAAGATGTCCGGCGC
CTGCGCTACGGTCGATTATTGTGAGGGTCGTGTCGCCTGCCTTGGCGAGT
ATGCTGCAAGGCAAGGAAAATAATGCGGCAGCACACGTGATAAATTCTAA
GGTCTGGGGATTTGTACGACGACTTGATGTGGAAGGGGGCTTGGAAGAGC
AGCGAGATGCCCTTGCGATGCTCTGCGTCTTACAAGAAGTCCTTGTCCCT
GCGCTCGGCCTCAATCGGTCTGACCCTACCTTCTGGACTATGCTTCGACG
CGGACTCGCCAGCGACTGCAACGCGGTTCGTAAGCGTGCCTTGTACGTAC
TAAGCGCCCAGGTAGAGATGGCCAAAACTGTCGGTGCTGTTTCTACCGGT
GCTGGTGCCACGGCCCATTTTCCTGCTTCTGCTTCGTCTCCTCTTAAGGT
CAAGTTCCTCACCTGGTGGCGACGCTTTGTCCAAGTCATGGACACATTCA
ATACGGCTCTTGAAACACATCTCCTGAATCAAGCTCTACCTGTCTGTACG
TCATTGCTGCGTGAGGCTTTTGCGTTCACCGGGAACGAGGAAGAGGAAGG
GCAGGATGGCATGCTCAACGGCAACGCGGCCTCTTTGCTCCCTCTACCTT
CGTTTGGATGGGCAGAGGCGCTTCTTGGCCGCGCAATAAGTGTGACGAAT
TTTTCCGTCCAGCGCACGTACTTGCTGTGGCTGATGAGTGAGGAGGGTGT
CGCTTGCGTCCCCTTGAGCAAGCTTGGTCCCCGCTTTATTATCACTAAAA
TTCTGCCGGCTTTCAAGGAAATGAGCAACTTGAAGGACGACAGGCCAAAG
CTTGGACGCTTCCTGGCGCGGGCCATTGTTGCGCAAGAAGAGGATAATGG
AGCGAGGCGGGAGGTGCTTGTGGCGGTGTTTGAGTATTGCAAGGATGTTG
TGCGAGGCGCCGTGGTACGGCAGACACTGCTCGGGTTTATAGAGTTCCGC
GACGTCTTCCAGCAGACATCCCCTTGTCTGCAAATCGATGATGTAGAGCT
GGCTCGTCTCCTCGTCTGTGTCATGAACTCACAATACAACCAAGGGCTCA
GTCAAATATTAGCTGGGCGGATGGTGGATTGCTTGGAGGTCTTTGCCGAT
TGTCAATCCCTCATTGCTGCTGGGCCTCACGGCGCCGCCGTCGTGCGTAC
CTTCCTCTTAGACCTTCCGCAGAAAGTTGCATTGGACAGCCACTATAACC
GTCTAGTTGAGTGGTTGGGGGTGTCGACAGTTGCGGGCGGGGCCACAGGA
TGGTGGGGCGAGAGCACTACATCGGCCATCGAAGCTTTGATAAACGGTAG
TGGTGGTCACGGCAGTGGCGAGTTGACCATGGCAGCTTCAGGAGGCTCTG
TCTGGTCGTCTATGGAAGGGGGCCAGTGCTTGGAAAATGTTAATCAGTCG
AGCATGGCATGCTGTGCTTTGGCTTGCATGTACTTGCCGGATCTTGAGTT
GGCACACGCCCTTGCTTCAGCTCTGCGGGTCCTGGGCCGCATTCACTCTC
ATCCCTACTTGACCCTGCGGTCGTGTCTGGCTTCCCTCTGTTTGCTGCGG
TCACTGGGTTCCCTTTTGCGACGAAAGCACCGTCCGTGTTTGTACGAGAT
TCTGCGGCAACACACAGGGGAAGTGGCCGAGTTTCTTGCTGCCAAGCTTC
AGGAGAGCTGCTTGTGTACCCGGGCCGACCTGTACGATAGTGGCAATTCA
GGCGTATTTGGACTGTGCGTGCAGGCGTTTGGGACGGTGATATGGCTGGC
TGCGGATGTAGGGTAAGTGATCAGGCTTCATATGCTTTTTTTTGGCCCTC
TGACAGGGCATAATTATTCGTATCTCAGTTCATTTGCCTTCACGATTCGT
GGTCTTCACTCCATCTTTCCTCCACCTTGTCAACCCTCCATCAGGCAAGT
TGCCGGTGCTATCCAGCGTGTGCTGAAAACGTGTTCAAGCGTGCTTAATG
CTGGCGTGGATGATGCAGCGGCTGGTGATGCAGGGGAAATTCGTCAGCTG
GGGCGTGCAGTAGCCGTGCTGCGAAGCGTCCTGGAAGCCCTCCTGCTGCA
ATCCAGCACGAGACTTTTTGGTGAAGTTAAATTGGACTGGGCTGCACGGC
TTATGAGCAGCCTTGTCAAAGCCGCTGCCAGCTTGGGCCTCCGACGAGGG
AAGCGGGACTTTTTTTTGTCCGTGGCACTCGAGAATGTATGGCGGTGCTT
GGTTCTTCTTTACAAAATTCAACGCCAGGGCGGTTTGGTGAAACCTACAG
ATAACCCTCTCCCCGTGGATATGGCATTTCTTTTTTCCGCATTGGAGATG
TCAAGCCGCAAATCGGTGCCCGATATTCTCTGCTGCATTAGCTGTCAACT
TCCGTTTCACCTCGGCATATCCGACAGCAACGGCACGGAGCAGGAACGAC
AAACGCGTCTCGACAACGTAGTCACGCTTGTGCTAGGCTGCATTGAAGAA
TGTAACTACAGACAAAGTGTCATGCAACTTGCCATCGAGATGGTGCTTTC
GCCGGCCATACTCGCAGACCCCACCCTCTGTCGAGGAACAGATACCCCGG
TGCGGCGTTTCTTTCATCGGCTTGTTGACCTCGGCACTGTCAAGCGGGCC
TATATTCTTCTGAATGCCACGGCCAGGTTAACATCTATTTGGCGGACAGA
ACCGGCGGCTGCAGCACTTGCTGGGGAATTCGTAGAGGAAATAGCGCAAC
TTTTGGTGCTTCGTGAGTTGGAAGAAGATGTGTACCAGCAAGTGAATGAG
GATGAGCGAGATTCCGAGCGAGATTCCGAGACAGACGTCATCAGGGAGGA
AATCAGAGAGCCCCAGGAAGAACACTCTGTCGCAGTGCTTCGCATCTTGG
TGCTTGGGTGTTTGTGCGATCTATTCCGACCACCAGATGATGGGGGAAAG
GCCAAACAGGGCGAATTTTTGACCCCCCTTCTCACTCGTTTGTTTGAAAT
AGCAGCTGCCGTAGATTTAAGAAGGGCTCAAATTCTGACTTCCCCCGACT
ACTCGTGCAAGCTTCGGGCGTGGCAAGCCATTTGCGTGCTTGTGCCGTTT
GTGAGGGCTGAGGATGCATCGCTGGTACAGGACTCGGTATATGCAGCCAT
GCGTGTGGTGGCGGTACCCTCCATCCGTTTTTACCAAGATACCGTTTTGG
CGCTTGTCTGCCAAAAGTTTCCCGACGTGGCGATTCCTTTCCTTGTGACG
GCTTTGACCGACCTCCAAGTCCCGCCATTAACCAGCGGCTCGTTCATTTC
TGCGGCGGGTTTGGCTTGCTTGACCAAAAATACTGCTTTCCCAGGTGGAG
AGCTTCCACAAGACTACGTTGCCCCCCTGCTCCAAGCCATCTTGCCGTGG
ATTTCAGGGCAACACGCAATTACGCGTATCGTCGCACAGCTCCTATCCTT
TTATCTCTTGTCTCGGCTACCCACAGGAGATCTGGATGCGGTCAAAGCTG
TGGAATCGGGTCAGAGCGGGAAAGGCGGAGTCAGCAACAGTAGAATCTCT
GCTGGCAGTATTGACGCGACTTTCCTGAGTCAAACTTTGAATTTCTTGAA
AAACCACCGCGAGATAGCGAGCTTGCGCCGCAAAGCTATGCTGCGCTTCC
AGGAAACTTCAGTACCCGCCTGCTGTACTGTATCACACCTTCTTGCCCAG
CACTCGAATGAGCAAGGCGGTGTGCGTGACCTGGTGCCGGAGCATGTAGA
AGAGGTGCTGCGGGAAGCGATGACGTCTCTGTATCGAGACCTGGAGGCAG
AACACCACATGACTTACACATCCATAGCGCCCGTGGTCCGAGGAGAAAAT
CTTTTTGAGCTTAAGCAAGACGCAAGTAGTGCCCGAGCCTTGTTGCTAGA
GGGGAATGCAGAGGCAGAGGCGGCCGACTGTTATTCGCTACAAAAAAAGA
TTGTGGTCTCTGACGTGCTGACTTCACTTCTCCCGGCTCCACCCACCGAC
AAATCCCAAAATACGCGAGGGGTTCTGCTGCAAGAGCTCGTGGTGTGCGC
GTCATTGCTGGAGCGGGTACCTAATGTAGCCGGCCTCGCCCGAACATGCG
AGATCTTCGCCGCATCCAAACTTATTATTCCCGACTTGCGCATGCTCAAA
GACCCGCTATTTGACCAAATTAGCAGCAGTGCGTGGAAATGGATTCAGAT
GGAGGAGATCCATGAAGGGCACACTCGCGCCTTTCTTCGGCGCTACAAAC
AGGAGGGTTACACGGTGGTGGGGCTCGAGCAAACAGACGACAGCTCGTGC
CTCTCTAGGGTGGCTTTGCCTCGCAAGATGCTCTTGCTTTTGGGCCGCGA
GAAGGAGGGCATTCCCGTTCCACTGCTTCAAGAGTTGGATTTGGTTGTGC
AGATTCCTCAGCTGGGTCTAGTGAGGAGTTTAAATGTGCACGTGAGCGCG
TCTCTCATTGTATGGGAGTATTTTAAGCAGCATCGCAAAAGCTGCGGTAA
GGACCAACAATGGTAGATTAGAACTAATTGAAATCATCAAAGTACAA

protein sequence of jgi.p|Nanoce1779_2|577037

>mRNA_340-protein ID=mRNA_340-protein|Name=jgi.p|Nanoce1779_2|577037|organism=Nannochloropsis oceanica|type=polypeptide|length=895bp
MLFFGPLTGHNYSYLSSFAFTIRGLHSIFPPPCQPSIRQVAGAIQRVLKT
CSSVLNAGVDDAAAGDAGEIRQLGRAVAVLRSVLEALLLQSSTRLFGEVK
LDWAARLMSSLVKAAASLGLRRGKRDFFLSVALENVWRCLVLLYKIQRQG
GLVKPTDNPLPVDMAFLFSALEMSSRKSVPDILCCISCQLPFHLGISDSN
GTEQERQTRLDNVVTLVLGCIEECNYRQSVMQLAIEMVLSPAILADPTLC
RGTDTPVRRFFHRLVDLGTVKRAYILLNATARLTSIWRTEPAAAALAGEF
VEEIAQLLVLRELEEDVYQQVNEDERDSERDSETDVIREEIREPQEEHSV
AVLRILVLGCLCDLFRPPDDGGKAKQGEFLTPLLTRLFEIAAAVDLRRAQ
ILTSPDYSCKLRAWQAICVLVPFVRAEDASLVQDSVYAAMRVVAVPSIRF
YQDTVLALVCQKFPDVAIPFLVTALTDLQVPPLTSGSFISAAGLACLTKN
TAFPGGELPQDYVAPLLQAILPWISGQHAITRIVAQLLSFYLLSRLPTGD
LDAVKAVESGQSGKGGVSNSRISAGSIDATFLSQTLNFLKNHREIASLRR
KAMLRFQETSVPACCTVSHLLAQHSNEQGGVRDLVPEHVEEVLREAMTSL
YRDLEAEHHMTYTSIAPVVRGENLFELKQDASSARALLLEGNAEAEAADC
YSLQKKIVVSDVLTSLLPAPPTDKSQNTRGVLLQELVVCASLLERVPNVA
GLARTCEIFAASKLIIPDLRMLKDPLFDQISSSAWKWIQMEEIHEGHTRA
FLRRYKQEGYTVVGLEQTDDSSCLSRVALPRKMLLLLGREKEGIPVPLLQ
ELDLVVQIPQLGLVRSLNVHVSASLIVWEYFKQHRKSCGKDQQW*

mRNA from alignment at scaffold_3:833915..839226+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_340 ID=mRNA_340|Name=jgi.p|Nanoce1779_2|577037|organism=Nannochloropsis oceanica|type=mRNA|length=5312bp|location=Sequence derived from alignment at scaffold_3:833915..839226+ (Nannochloropsis oceanica)
AGGCATGGCGCTTGGCCAGCAGCAGATGGAGAAGGGTGATCAGATGCTTG
CGCTGGCAGAGGGGGTGGCCAAGGCTGGGGAGGCTTCTACCTTGGGACTC
AAGGAGCGCCTCGCCCTTCTCAATGCTCTCAGCAGCAGTATCACCACCAA
CCGTCGCACCATGCGCCTCATCCCGGAGGATCTAGACCTGGGAGAGGGCT
CCGCGGATGCTCTTTTGCTTCATGTCAACGCAGTGGAGCTCTTGCTGGCA
GCTGGGCGAGAAGAGGTCGGCAGCAATGACGAAGACGCGTGGGGGACCGT
GGTGTCATTGTGGATCGAGAGGGTGGGACTTCCCATTCTTACCTCTCGGC
GTCTGGACCTTGGTCCCGCACAGAATGAAATAGGCATGCGTATAGGTCGT
CTATTGGCATCGACAAGCAGTGAAGCGATACAACAAGCCATGCAGGCAGC
AACATTGCATGTGCTTGACGATATGAGCGTGCGCGTGTCCTGTCCACGGG
CAGACAAAGACGGCGGGGAGCTGCTGGAGGTGATTAGTGCTCAAGCTGGA
TGGGTTGCTTCTTTCTTAAATCAAGGTGCACAAGATGTTGATACATTCCC
ACTTGCTGTACTCGAGCGCACACTTGTAAACTTGGAAAGATGTCCGGCGC
CTGCGCTACGGTCGATTATTGTGAGGGTCGTGTCGCCTGCCTTGGCGAGT
ATGCTGCAAGGCAAGGAAAATAATGCGGCAGCACACGTGATAAATTCTAA
GGTCTGGGGATTTGTACGACGACTTGATGTGGAAGGGGGCTTGGAAGAGC
AGGTGAGTAGGCAGAAAGAGTAGGGGGGAATGCGCATTGCGGTACTTTAC
TCTCCCCTTTACGCTTGCATCACTAGCTCTACATCGCGTCCATAACCGAC
AATTCTATGTGATTGCCTCTTTTTGTTTAATGTTAAGTAATTGTTTTTTC
TTTTCTTCTCTACACAGCGAGATGCCCTTGCGATGCTCTGCGTCTTACAA
GAAGTCCTTGTCCCTGCGCTCGGCCTCAATCGGTCTGACCCTACCTTCTG
GACTATGCTTCGACGCGGACTCGCCAGCGACTGCAACGCGGTTCGTAAGC
GTGCCTTGTACGTACTAAGCGCCCAGGTAGAGATGGCCAAAACTGTCGGT
GCTGTTTCTACCGGTGCTGGTGCCACGGCCCATTTTCCTGCTTCTGCTTC
GTCTCCTCTTAAGGTCAAGTTCCTCACCTGGTGGCGACGCTTTGTCCAAG
TCATGGACACATTCAATACGGCTCTTGAAACACATCTCCTGAATCAAGCT
CTACCTGTCTGTACGTCATTGCTGCGTGAGGCTTTTGCGTTCACCGGGAA
CGAGGAAGAGGAAGGGCAGGATGGCATGCTCAACGGCAACGCGGCCTCTT
TGCTCCCTCTACCTTCGTTTGGATGGGCAGAGGCGCTTCTTGGCCGCGCA
ATAAGTGTGACGAATTTTTCCGTCCAGCGCACGTACTTGCTGTGGCTGAT
GAGTGAGGAGGGTGTCGCTTGCGTCCCCTTGAGCAAGCTTGGTCCCCGCT
TTATTATCACTAAAATTCTGCCGGCTTTCAAGGAAATGAGCAACTTGAAG
GACGACAGGCCAAAGCTTGGACGCTTCCTGGCGCGGGCCATTGTTGCGCA
AGAAGAGGATAATGGAGCGAGGCGGGAGGTGCTTGTGGCGGTGTTTGAGT
ATTGCAAGGATGTTGTGCGAGGCGCCGTGGTACGGCAGACACTGCTCGGG
TTTATAGAGTTCCGCGACGTCTTCCAGCAGACATCCCCTTGTCTGCAAAT
CGATGATGTAGAGCTGGCTCGTCTCCTCGTCTGTGTCATGAACTCACAAT
ACAACCAAGGGCTCAGTCAAATATTAGCTGGGCGGATGGTGGATTGCTTG
GAGGTCTTTGCCGATTGTCAATCCCTCATTGCTGCTGGGCCTCACGGCGC
CGCCGTCGTGCGTACCTTCCTCTTAGACCTTCCGCAGAAAGTTGCATTGG
ACAGCCACTATAACCGTCTAGTTGAGTGGTTGGGGGTGTCGACAGTTGCG
GGCGGGGCCACAGGATGGTGGGGCGAGAGCACTACATCGGCCATCGAAGC
TTTGATAAACGGTAGTGGTGGTCACGGCAGTGGCGAGTTGACCATGGCAG
CTTCAGGAGGCTCTGTCTGGTCGTCTATGGAAGGGGGCCAGTGCTTGGAA
AATGTTAATCAGTCGAGCATGGCATGCTGTGCTTTGGCTTGCATGTACTT
GCCGGATCTTGAGTTGGCACACGCCCTTGCTTCAGCTCTGCGGGTCCTGG
GCCGCATTCACTCTCATCCCTACTTGACCCTGCGGTCGTGTCTGGCTTCC
CTCTGTTTGCTGCGGTCACTGGGTTCCCTTTTGCGACGAAAGCACCGTCC
GTGTTTGTACGAGATTCTGCGGCAACACACAGGGGAAGTGGCCGAGTTTC
TTGCTGCCAAGCTTCAGGAGAGCTGCTTGTGTACCCGGGCCGACCTGTAC
GATAGTGGCAATTCAGGCGTATTTGGACTGTGCGTGCAGGCGTTTGGGAC
GGTGATATGGCTGGCTGCGGATGTAGGGTAAGTGATCAGGCTTCATATGC
TTTTTTTTGGCCCTCTGACAGGGCATAATTATTCGTATCTCAGTTCATTT
GCCTTCACGATTCGTGGTCTTCACTCCATCTTTCCTCCACCTTGTCAACC
CTCCATCAGGCAAGTTGCCGGTGCTATCCAGCGTGTGCTGAAAACGTGTT
CAAGCGTGCTTAATGCTGGCGTGGATGATGCAGCGGCTGGTGATGCAGGG
GAAATTCGTCAGCTGGGGCGTGCAGTAGCCGTGCTGCGAAGCGTCCTGGA
AGCCCTCCTGCTGCAATCCAGCACGAGACTTTTTGGTGAAGTTAAATTGG
ACTGGGCTGCACGGCTTATGAGCAGCCTTGTCAAAGCCGCTGCCAGCTTG
GGCCTCCGACGAGGGAAGCGGGACTTTTTTTTGTCCGTGGCACTCGAGAA
TGTATGGCGGTGCTTGGTTCTTCTTTACAAAATTCAACGCCAGGGCGGTT
TGGTGAAACCTACAGATAACCCTCTCCCCGTGGATATGGCATTTCTTTTT
TCCGCATTGGAGATGTCAAGCCGCAAATCGGTGCCCGATATTCTCTGCTG
CATTAGCTGTCAACTTCCGTTTCACCTCGGCATATCCGACAGCAACGGCA
CGGAGCAGGAACGACAAACGCGTCTCGACAACGTAGTCACGCTTGTGCTA
GGCTGCATTGAAGAATGTAACTACAGACAAAGTGTCATGCAACTTGCCAT
CGAGATGGTGCTTTCGCCGGCCATACTCGCAGACCCCACCCTCTGTCGAG
GAACAGATACCCCGGTGCGGCGTTTCTTTCATCGGCTTGTTGACCTCGGC
ACTGTCAAGCGGGCCTATATTCTTCTGAATGCCACGGCCAGGTTAACATC
TATTTGGCGGACAGAACCGGCGGCTGCAGCACTTGCTGGGGAATTCGTAG
AGGAAATAGCGCAACTTTTGGTGCTTCGTGAGTTGGAAGAAGATGTGTAC
CAGCAAGTGAATGAGGATGAGCGAGATTCCGAGCGAGATTCCGAGACAGA
CGTCATCAGGGAGGAAATCAGAGAGCCCCAGGAAGAACACTCTGTCGCAG
TGCTTCGCATCTTGGTGCTTGGGTGTTTGTGCGATCTATTCCGACCACCA
GATGATGGGGGAAAGGCCAAACAGGGCGAATTTTTGACCCCCCTTCTCAC
TCGTTTGTTTGAAATAGCAGCTGCCGTAGATTTAAGAAGGGCTCAAATTC
TGACTTCCCCCGACTACTCGTGCAAGCTTCGGGCGTGGCAAGCCATTTGC
GTGCTTGTGCCGTTTGTGAGGGCTGAGGATGCATCGCTGGTACAGGACTC
GGTATATGCAGCCATGCGTGTGGTGGCGGTACCCTCCATCCGTTTTTACC
AAGATACCGTTTTGGCGCTTGTCTGCCAAAAGTTTCCCGACGTGGCGATT
CCTTTCCTTGTGACGGCTTTGACCGACCTCCAAGTCCCGCCATTAACCAG
CGGCTCGTTCATTTCTGCGGCGGGTTTGGCTTGCTTGACCAAAAATACTG
CTTTCCCAGGTGGAGAGCTTCCACAAGACTACGTTGCCCCCCTGCTCCAA
GCCATCTTGCCGTGGATTTCAGGGCAACACGCAATTACGCGTATCGTCGC
ACAGCTCCTATCCTTTTATCTCTTGTCTCGGCTACCCACAGGAGATCTGG
ATGCGGTCAAAGCTGTGGAATCGGGTCAGAGCGGGAAAGGCGGAGTCAGC
AACAGTAGAATCTCTGCTGGCAGTATTGACGCGACTTTCCTGAGTCAAAC
TTTGAATTTCTTGAAAAACCACCGCGAGATAGCGAGCTTGCGCCGCAAAG
CTATGCTGCGCTTCCAGGAAACTTCAGTACCCGCCTGCTGTACTGTATCA
CACCTTCTTGCCCAGCACTCGAATGAGCAAGGCGGTGTGCGTGACCTGGT
GCCGGAGCATGTAGAAGAGGTGCTGCGGGAAGCGATGACGTCTCTGTATC
GAGACCTGGAGGCAGAACACCACATGACTTACACATCCATAGCGCCCGTG
GTCCGAGGAGAAAATCTTTTTGAGCTTAAGCAAGACGCAAGTAGTGCCCG
AGCCTTGTTGCTAGAGGGGAATGCAGAGGCAGAGGCGGCCGACTGTTATT
CGCTACAAAAAAAGATTGTGGTCTCTGACGTGCTGACTTCACTTCTCCCG
GCTCCACCCACCGACAAATCCCAAAATACGCGAGGGGTTCTGCTGCAAGA
GCTCGTGGTGTGCGCGTCATTGCTGGAGCGGGTACCTAATGTAGCCGGCC
TCGCCCGAACATGCGAGATCTTCGCCGCATCCAAACTTATTATTCCCGAC
TTGCGCATGCTCAAAGACCCGCTATTTGACCAAATTAGCAGCAGTGCGTG
GAAATGGATTCAGATGGAGGAGATCCATGAAGGGCACACTCGCGCCTTTC
TTCGGCGCTACAAACAGGAGGGTTACACGGTGGTGGGGCTCGAGCAAACA
GACGACAGCTCGTGCCTCTCTAGGGTGGCTTTGCCTCGCAAGATGCTCTT
GCTTTTGGGCCGCGAGAAGGAGGGCATTCCCGTTCCACTGCTTCAAGAGT
TGGATTTGGTTGTGCAGATTCCTCAGCTGGGTCTAGTGAGGAGTTTAAAT
GTGCACGTGAGCGCGTCTCTCATTGTATGGGAGTATTTTAAGCAGCATCG
CAAAAGCTGCGGTAAGGACCAACAATGGTAGATTAGAACTAATTGAAATC
ATCAAAGTACAA

Coding sequence (CDS) from alignment at scaffold_3:833915..839226+

>mRNA_340 ID=mRNA_340|Name=jgi.p|Nanoce1779_2|577037|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at scaffold_3:833915..839226+ (Nannochloropsis oceanica)
ATGCTTTTTTTTGGCCCTCTGACAGGGCATAATTATTCGTATCTCAGTTC
ATTTGCCTTCACGATTCGTGGTCTTCACTCCATCTTTCCTCCACCTTGTC
AACCCTCCATCAGGCAAGTTGCCGGTGCTATCCAGCGTGTGCTGAAAACG
TGTTCAAGCGTGCTTAATGCTGGCGTGGATGATGCAGCGGCTGGTGATGC
AGGGGAAATTCGTCAGCTGGGGCGTGCAGTAGCCGTGCTGCGAAGCGTCC
TGGAAGCCCTCCTGCTGCAATCCAGCACGAGACTTTTTGGTGAAGTTAAA
TTGGACTGGGCTGCACGGCTTATGAGCAGCCTTGTCAAAGCCGCTGCCAG
CTTGGGCCTCCGACGAGGGAAGCGGGACTTTTTTTTGTCCGTGGCACTCG
AGAATGTATGGCGGTGCTTGGTTCTTCTTTACAAAATTCAACGCCAGGGC
GGTTTGGTGAAACCTACAGATAACCCTCTCCCCGTGGATATGGCATTTCT
TTTTTCCGCATTGGAGATGTCAAGCCGCAAATCGGTGCCCGATATTCTCT
GCTGCATTAGCTGTCAACTTCCGTTTCACCTCGGCATATCCGACAGCAAC
GGCACGGAGCAGGAACGACAAACGCGTCTCGACAACGTAGTCACGCTTGT
GCTAGGCTGCATTGAAGAATGTAACTACAGACAAAGTGTCATGCAACTTG
CCATCGAGATGGTGCTTTCGCCGGCCATACTCGCAGACCCCACCCTCTGT
CGAGGAACAGATACCCCGGTGCGGCGTTTCTTTCATCGGCTTGTTGACCT
CGGCACTGTCAAGCGGGCCTATATTCTTCTGAATGCCACGGCCAGGTTAA
CATCTATTTGGCGGACAGAACCGGCGGCTGCAGCACTTGCTGGGGAATTC
GTAGAGGAAATAGCGCAACTTTTGGTGCTTCGTGAGTTGGAAGAAGATGT
GTACCAGCAAGTGAATGAGGATGAGCGAGATTCCGAGCGAGATTCCGAGA
CAGACGTCATCAGGGAGGAAATCAGAGAGCCCCAGGAAGAACACTCTGTC
GCAGTGCTTCGCATCTTGGTGCTTGGGTGTTTGTGCGATCTATTCCGACC
ACCAGATGATGGGGGAAAGGCCAAACAGGGCGAATTTTTGACCCCCCTTC
TCACTCGTTTGTTTGAAATAGCAGCTGCCGTAGATTTAAGAAGGGCTCAA
ATTCTGACTTCCCCCGACTACTCGTGCAAGCTTCGGGCGTGGCAAGCCAT
TTGCGTGCTTGTGCCGTTTGTGAGGGCTGAGGATGCATCGCTGGTACAGG
ACTCGGTATATGCAGCCATGCGTGTGGTGGCGGTACCCTCCATCCGTTTT
TACCAAGATACCGTTTTGGCGCTTGTCTGCCAAAAGTTTCCCGACGTGGC
GATTCCTTTCCTTGTGACGGCTTTGACCGACCTCCAAGTCCCGCCATTAA
CCAGCGGCTCGTTCATTTCTGCGGCGGGTTTGGCTTGCTTGACCAAAAAT
ACTGCTTTCCCAGGTGGAGAGCTTCCACAAGACTACGTTGCCCCCCTGCT
CCAAGCCATCTTGCCGTGGATTTCAGGGCAACACGCAATTACGCGTATCG
TCGCACAGCTCCTATCCTTTTATCTCTTGTCTCGGCTACCCACAGGAGAT
CTGGATGCGGTCAAAGCTGTGGAATCGGGTCAGAGCGGGAAAGGCGGAGT
CAGCAACAGTAGAATCTCTGCTGGCAGTATTGACGCGACTTTCCTGAGTC
AAACTTTGAATTTCTTGAAAAACCACCGCGAGATAGCGAGCTTGCGCCGC
AAAGCTATGCTGCGCTTCCAGGAAACTTCAGTACCCGCCTGCTGTACTGT
ATCACACCTTCTTGCCCAGCACTCGAATGAGCAAGGCGGTGTGCGTGACC
TGGTGCCGGAGCATGTAGAAGAGGTGCTGCGGGAAGCGATGACGTCTCTG
TATCGAGACCTGGAGGCAGAACACCACATGACTTACACATCCATAGCGCC
CGTGGTCCGAGGAGAAAATCTTTTTGAGCTTAAGCAAGACGCAAGTAGTG
CCCGAGCCTTGTTGCTAGAGGGGAATGCAGAGGCAGAGGCGGCCGACTGT
TATTCGCTACAAAAAAAGATTGTGGTCTCTGACGTGCTGACTTCACTTCT
CCCGGCTCCACCCACCGACAAATCCCAAAATACGCGAGGGGTTCTGCTGC
AAGAGCTCGTGGTGTGCGCGTCATTGCTGGAGCGGGTACCTAATGTAGCC
GGCCTCGCCCGAACATGCGAGATCTTCGCCGCATCCAAACTTATTATTCC
CGACTTGCGCATGCTCAAAGACCCGCTATTTGACCAAATTAGCAGCAGTG
CGTGGAAATGGATTCAGATGGAGGAGATCCATGAAGGGCACACTCGCGCC
TTTCTTCGGCGCTACAAACAGGAGGGTTACACGGTGGTGGGGCTCGAGCA
AACAGACGACAGCTCGTGCCTCTCTAGGGTGGCTTTGCCTCGCAAGATGC
TCTTGCTTTTGGGCCGCGAGAAGGAGGGCATTCCCGTTCCACTGCTTCAA
GAGTTGGATTTGGTTGTGCAGATTCCTCAGCTGGGTCTAGTGAGGAGTTT
AAATGTGCACGTGAGCGCGTCTCTCATTGTATGGGAGTATTTTAAGCAGC
ATCGCAAAAGCTGCGGTAAGGACCAACAATGGTAG

Synonyms

Publications