jgi.p|Nanoce1779_2|228574, mRNA_34 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|228574
Unique Name	mRNA_34
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1111
Alignment location	scaffold_3:100643..102407 -

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Properties


Property Name	Value
TranscriptId	228660
Track	FilteredModels2
ProteinId	228574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:100643..102407 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228574	gene_34	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|228574	mRNA_34-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_34	CDS_34	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:100643..102407-
coding sequence from alignment at scaffold_3:100643..102407-

mRNA sequence

>mRNA_34 ID=mRNA_34|Name=jgi.p|Nanoce1779_2|228574|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
TAATCCGCGTCCAATGCATTTCAACATAGGCAACGACAGGAAAGAGGCAG
CTGCAGCATCGGGATAGGCCACGTCAAACGACATCACAGGGGCATTTACA
CAAACGACACCGGGCAGCCTTATTATTACCCAAGGCCGCTTTCCTTTAAC
CCCCTCGCCCGCAGTATTCCCACAACCCCGCCATGTTGGCCGATAAATTG
GAAGTTCGTGAGCATACCCTGTACGGGTTCAGATGTCGTGGGCTTTTTGC
AGCGGAGACAATCAAGGCTGGGGAGGTTGTCTGGTCCTACAAGGAAGGCA
CCGAGATTCTTCGGACGTACAACAAGCACCACATCGACGCCCTTCCCGAC
TCATCCGCCAAATCCAATATTATCACCTACTCGTACATGCTTGACGACGA
CCTCTTCGGCTCTACTCCTACTCCTGAAGAGGACCCTTCATACTTCTTCA
ACCACTCTTGCGCGCCAAACTGCTGGTACAGCGGCGACAACTGCATCGTG
GCCATGCGGGACATAAATAGGGACGAGCATGTGGTGTATGATTATGCCAT
GACCGAGACCGAAGGGAGTTTGCACGCTGGGCTGGAGTGCCGGTGCGGGG
CCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGGGAGGAAGGGATGACGTGC
CGGGGGGTGCTCCGGTTCGACGACTGGAGGAGGGCGAGCTGGGCGGAGAG
GTACAGTGGGCATGTGACGAGTTATGTGCAGAGAAAGATGGAGGAAAACA
GCTGGCACGATACCCGGGTGGTGTTGAGGTTCAAAAAAGGCGCGAATGGC
GCGGGGGAGGGCGGAATGGTGGAGGGGGGGGGAGGGGGGAGGGAAGGAAA
AGGGCTTGTTTCTGACGGCGGCGATGAGGAAGGGGGAGGTGGTGCTGGTG
TTTGCAGGGAAGGTGGTGGGAATGGAGGGACTGCTGGCAGCCGGGAGAAG
GAATATGGAGCTGTCGTTGCAGATCAACGATACCCTGTGGCAGATTCCGT
CCACCAGAGGCCCCGAGACGAGTGATTTCGTCAACCACTCCTGCGACGCC
AACTCGGGCATGGAAGACTCCACCACTGTGGTGGCCATCCGGGACATGCG
GGCGGGGGAGG

protein sequence of jgi.p|Nanoce1779_2|228574

>mRNA_34-protein ID=mRNA_34-protein|Name=jgi.p|Nanoce1779_2|228574|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MLADKLEVREHTLYGFRCRGLFAAETIKAGEVVWSYKEGTEILRTYNKHH
IDALPDSSAKSNIITYSYMLDDDLFGSTPTPEEDPSYFFNHSCAPNCWYS
GDNCIVAMRDINRDEHVVYDYAMTETEGSLHAGLECRCGAGREGGKEGRG
EEGMTCRGVLRFDDWRRASWAERYSGHVTSYVQRKMEENSWHDTRVVLRF
KKGANGAGEGGMVEGGGGGREGKGLVSDGGDEEGGGGAGVCREGGGNGGT
AGSREKEYGAVVADQRYPVADSVHQRPRDE*

mRNA from alignment at scaffold_3:100643..102407-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_34 ID=mRNA_34|Name=jgi.p|Nanoce1779_2|228574|organism=Nannochloropsis oceanica|type=mRNA|length=1765bp|location=Sequence derived from alignment at scaffold_3:100643..102407- (Nannochloropsis oceanica)
TAATCCGCGTCCAATGCATTTCAACATAGGCAACGACAGGAAAGAGGCAG
CTGCAGCATCGGGATAGGCCACGTCAAACGACATCACAGGGGCATTTACA
CAAACGACACCGGGCAGCCTTATTATTACCCAAGGCCGCTTTCCTTTAAC
CCCCTCGCCCGCAGTATTCCCACAACCCCGCCATGTTGGCCGATAAATTG
GAAGTTCGTGAGCATACCCTGTACGGGTTCAGATGTCGTGGGCTTTTTGC
AGCGGAGACAATCAAGGTAAGGCGCGCGAAGGCCTCCCAACCTCCAACCC
CCTCTGCTCCTCTGAACCTCTCCGACACTTCCTTATGAAGTCAATCAGGA
CCATAATTATATTCTTCTAGCTGCCTTATCATCTCAAATGTACATGCATA
TTGCCTCTGCCAACACCCGTCCCTCCCTCCCTCCTTCCCTCCCTCCAGGC
TGGGGAGGTTGTCTGGTCCTACAAGGAAGGCACCGAGATTCTTCGGACGT
ACAACAAGCACCACATCGACGCCCTTCCCGACTCATCCGCCAAATCCAAT
ATTATCACCTACTCGTACATGCTTGACGACGACCTCTTCGGCTCTACTCC
TACTCCTGAAGGTCCCTCCCTCCCTCCCTCCCTCCCTGCCTGCTGTTCTG
TCCCCCCTTCTCCCCTTGGTTTTTTTATTTCATTTCCTGGTTCTAATCCA
TATTCTGGAACAAATTGCTGTGTTCCTCCTCTCTCTTTTCCCCCCTCTTC
CTCAGAGGACCCTTCATACTTCTTCAACCACTCTTGCGCGCCAAACTGCT
GGTACAGCGGCGACAACTGCATCGTGGCCATGCGGGACATAAATAGGGAC
GAGCATGTGGTGTATGATTATGCCATGACCGAGACCGAAGGGAGTTTGCA
CGCTGGGCTGGAGTGCCGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGG
GAAGGGGGGAGGAAGGGATGACGTGCCGGGGGGTGCTCCGGTTCGACGAC
TGGAGGAGGGCGAGCTGGGCGGAGAGGTACAGTGGGCATGTGACGAGTTA
TGTGCAGAGAAAGATGGAGGAAAACAGCTGGCACGATACCCGGGTGGTGT
TGAGGTTCAAAAAAGGCGCGAATGGCGCGGGGGAGGGCGGAATGGTGGAG
GGGGGGGGAGGGGGGAGGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCGA
TGAGGAAGGGGGAGGTGGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAATG
GAGGGACTGCTGGCAGCCGGGAGAAGGAATATGGAGCTGTCGTTGCAGGT
ACGCCTCGGCCTCCTTCCCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTTC
CCTTTTTTTCACGACGATCGATAGCGTGCGCCATCGCCACATGCAACCCA
CCTCAGTGCTACCGACACATACACATCCTCCCTCCATCCCCAGATCAACG
ATACCCTGTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAGTGATTTC
GTCAACCACTCCTGCGACGCCAACTCGGGTAAGGAGGGAGGGAGGCAGGG
AGGGAGGGAGGGGGGTTGGGAGGGAAGGAGGGAGGGCAACGTCGACAAAG
ACAAAGGTGGGCTTCGTCCCGTGCCTTGGTTCCTTTATTCTCATCCCCTC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCATCCCT
CCCTCTCCCAGGCATGGAAGACTCCACCACTGTGGTGGCCATCCGGGACA
TGCGGGCGGGGGAGG

Coding sequence (CDS) from alignment at scaffold_3:100643..102407-

>mRNA_34 ID=mRNA_34|Name=jgi.p|Nanoce1779_2|228574|organism=Nannochloropsis oceanica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_3:100643..102407- (Nannochloropsis oceanica)
ATCAACGATACCCTGTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAG
TGAAGGACCCTTCATACTTCTTCAACCACTCTTGCGCGCCAAACTGCTGG
TACAGCGGCGACAACTGCATCGTGGCCATGCGGGACATAAATAGGGACGA
GCATGTGGTGTATGATTATGCCATGACCGAGACCGAAGGGAGTTTGCACG
CTGGGCTGGAGTGCCGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGGGA
AGGGGGGAGGAAGGGATGACGTGCCGGGGGGTGCTCCGGTTCGACGACTG
GAGGAGGGCGAGCTGGGCGGAGAGGTACAGTGGGCATGTGACGAGTTATG
TGCAGAGAAAGATGGAGGAAAACAGCTGGCACGATACCCGGGTGGTGTTG
AGGTTCAAAAAAGGCGCGAATGGCGCGGGGGAGGGCGGAATGGTGGAGGG
GGGGGGAGGGGGGAGGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCGATG
AGGAAGGGGGAGGTGGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAATGGA
GGGACTGCTGGCAGCCGGGAGAAGGAATATGGAGCTGTCGTTGCAGGCTG
GGGAGGTTGTCTGGTCCTACAAGGAAGGCACCGAGATTCTTCGGACGTAC
AACAAGCACCACATCGACGCCCTTCCCGACTCATCCGCCAAATCCAATAT
TATCACCTACTCGTACATGCTTGACGACGACCTCTTCGGCTCTACTCCTA
CTCCTGAAGATGTTGGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTA
CGGGTTCAGATGTCGTGGGCTTTTTGCAGCGGAGACAATCAAGATCAACG
ATACCCTGTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAGTGAAGGA
CCCTTCATACTTCTTCAACCACTCTTGCGCGCCAAACTGCTGGTACAGCG
GCGACAACTGCATCGTGGCCATGCGGGACATAAATAGGGACGAGCATGTG
GTGTATGATTATGCCATGACCGAGACCGAAGGGAGTTTGCACGCTGGGCT
GGAGTGCCGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGGG
AGGAAGGGATGACGTGCCGGGGGGTGCTCCGGTTCGACGACTGGAGGAGG
GCGAGCTGGGCGGAGAGGTACAGTGGGCATGTGACGAGTTATGTGCAGAG
AAAGATGGAGGAAAACAGCTGGCACGATACCCGGGTGGTGTTGAGGTTCA
AAAAAGGCGCGAATGGCGCGGGGGAGGGCGGAATGGTGGAGGGGGGGGGA
GGGGGGAGGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCGATGAGGAAGG
GGGAGGTGGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAATGGAGGGACTG
CTGGCAGCCGGGAGAAGGAATATGGAGCTGTCGTTGCAGGCTGGGGAGGT
TGTCTGGTCCTACAAGGAAGGCACCGAGATTCTTCGGACGTACAACAAGC
ACCACATCGACGCCCTTCCCGACTCATCCGCCAAATCCAATATTATCACC
TACTCGTACATGCTTGACGACGACCTCTTCGGCTCTACTCCTACTCCTGA
AGATGTTGGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTC
AGATGTCGTGGGCTTTTTGCAGCGGAGACAATCAAGATCAACGATACCCT
GTGGCAGATTCCGTCCACCAGAGGCCCCGAGACGAGTGAAGGACCCTTCA
TACTTCTTCAACCACTCTTGCGCGCCAAACTGCTGGTACAGCGGCGACAA
CTGCATCGTGGCCATGCGGGACATAAATAGGGACGAGCATGTGGTGTATG
ATTATGCCATGACCGAGACCGAAGGGAGTTTGCACGCTGGGCTGGAGTGC
CGGTGCGGGGCCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGGGAGGAAGG
GATGACGTGCCGGGGGGTGCTCCGGTTCGACGACTGGAGGAGGGCGAGCT
GGGCGGAGAGGTACAGTGGGCATGTGACGAGTTATGTGCAGAGAAAGATG
GAGGAAAACAGCTGGCACGATACCCGGGTGGTGTTGAGGTTCAAAAAAGG
CGCGAATGGCGCGGGGGAGGGCGGAATGGTGGAGGGGGGGGGAGGGGGGA
GGGAAGGAAAAGGGCTTGTTTCTGACGGCGGCGATGAGGAAGGGGGAGGT
GGTGCTGGTGTTTGCAGGGAAGGTGGTGGGAATGGAGGGACTGCTGGCAG
CCGGGAGAAGGAATATGGAGCTGTCGTTGCAGGCTGGGGAGGTTGTCTGG
TCCTACAAGGAAGGCACCGAGATTCTTCGGACGTACAACAAGCACCACAT
CGACGCCCTTCCCGACTCATCCGCCAAATCCAATATTATCACCTACTCGT
ACATGCTTGACGACGACCTCTTCGGCTCTACTCCTACTCCTGAAGATGTT
GGCCGATAAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTCAGATGTC
GTGGGCTTTTTGCAGCGGAGACAATCAAGATCAACGATACCCTGTGGCAG
ATTCCGTCCACCAGAGGCCCCGAGACGAGTGAAGGACCCTTCATACTTCT
TCAACCACTCTTGCGCGCCAAACTGCTGGTACAGCGGCGACAACTGCATC
GTGGCCATGCGGGACATAAATAGGGACGAGCATGTGGTGTATGATTATGC
CATGACCGAGACCGAAGGGAGTTTGCACGCTGGGCTGGAGTGCCGGTGCG
GGGCCGGGAGGGAGGGCGGGAAGGAGGGAAGGGGGGAGGAAGGGATGACG
TGCCGGGGGGTGCTCCGGTTCGACGACTGGAGGAGGGCGAGCTGGGCGGA
GAGGTACAGTGGGCATGTGACGAGTTATGTGCAGAGAAAGATGGAGGAAA
ACAGCTGGCACGATACCCGGGTGGTGTTGAGGTTCAAAAAAGGCGCGAAT
GGCGCGGGGGAGGGCGGAATGGTGGAGGGGGGGGGAGGGGGGAGGGAAGG
AAAAGGGCTTGTTTCTGACGGCGGCGATGAGGAAGGGGGAGGTGGTGCTG
GTGTTTGCAGGGAAGGTGGTGGGAATGGAGGGACTGCTGGCAGCCGGGAG
AAGGAATATGGAGCTGTCGTTGCAGGCTGGGGAGGTTGTCTGGTCCTACA
AGGAAGGCACCGAGATTCTTCGGACGTACAACAAGCACCACATCGACGCC
CTTCCCGACTCATCCGCCAAATCCAATATTATCACCTACTCGTACATGCT
TGACGACGACCTCTTCGGCTCTACTCCTACTCCTGAAGATGTTGGCCGAT
AAATTGGAAGTTCGTGAGCATACCCTGTACGGGTTCAGATGTCGTGGGCT
TTTTGCAGCGGAGACAATCAAG

Synonyms

Publications