jgi.p|Nanoce1779_2|581997, mRNA_3399 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581997
Unique Name	mRNA_3399
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2201
Alignment location	scaffold_6:216117..218528 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582083
Track	FilteredModels2
ProteinId	581997

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:216117..218528 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581997	gene_3399	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581997	mRNA_3399-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3399	CDS_3399	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:216117..218528+
coding sequence from alignment at scaffold_6:216117..218528+

mRNA sequence

>mRNA_3399 ID=mRNA_3399|Name=jgi.p|Nanoce1779_2|581997|organism=Nannochloropsis oceanica|type=mRNA|length=2201bp
TGGGAAAAGAGGAGGATAGTTGAGTTGTGGTTTTGGGAGAAGTACTGAAA
GCCGCGGCCCTCCATTTCTCGCGGCAGCGCTCCGCTCCAGGTCTCGGCAA
GCATCTGACCGTGGAATTCTCTGGAGCCGTTTGTAATGGCTATTTGGGTG
CACGGCGACGATGTGTCCTGGACATGTATGTGCTGTCAAGAGAGGCCCAA
ACATGACATAGGGGGGGATGACGACCATGACAAAACTCGCCACGCCCCTT
CATAAAAACCATGCCTCCCCGCACCAGCAGCTTGAGACTGGAATGGACTT
GATCTTCTCTTGCCTTGTACCGTGTACTTATGTGTCGTGTGAGGCAAACG
CAGGTGCCAGGTGTCCGTTGCCTCACTCCTTCTCCGTGCTTCAGCGAGGA
GTCCAAACATAGCCACCCCACACACTCGTAGCTCAACAACTTTGCAAAAA
CACACAGACGGCGGCACATTTTCCCAGCCGGAGCAGCAGCAGCATGGTCT
CTGCTACCACCCCAGTAACCTGTAAGCGGCGGTTGCGCAACACTTGCAGC
AGAACTACGGCTGCAGCCCTCCTCCTTGCACTCCTTGCCGGGTCAAATCA
AGCCTTTGTTCTTGTTCCTTCGAGACAAGCAGCAGCAGCAGCAGCAATTA
GAGCTCAGGGACGGCTACAGAGCCAACATCACCATATTTGCTTTCCCACA
ATCGTCCGCCCTACGTCGACGCGCCTTCGTGCTTCCTCCTCTCCCCCGTC
CTCCTCCCCCCCCCCTTCTATCCCTCCACCCCCTGCATCTGACGCCTCTC
AATATTGGCCCTTGGTCGAAGAGCTCGTCTCCTCCTGCCTGAACGAAGAA
GATAGTGTTACGGACATCAACAACCCCACGTCCTTCCGTCCGCGGCAACG
TGACATGGATTCAAGTGGACAGGGCGTCTTTTCGATAGGGGCCTCGGTGG
CTGACACCCGCTTGGTTGACGGCCTCGAGCTCATGAAAGTTAGAAAGAAG
AAGGACGGCAGCGTTCAATCAGGTTTTCTCAAGTACTGGAACTCGGTCCG
ACTCGAATTTTACGGTGTGTCGCGGAGTGACGTGAGGGTGTATGCCCGCA
TGAGGGAGAGGGTGGAGAGGGCCTTGGGGTTCACGGCCTCGCCGGCTGTC
GAGCGAGTGGAGAGCGGGATTGCAGTGGTGATGGCGCTTTCTGTCGGCTC
GGCACTAACCACGCTGGACAAATTACCAGGCCCTGACATCGTCCGGTGGT
TCGCGACGTCATTTTTGGTGTCCATCCCCTTTCTGTACATTTCTTTAGGA
TTGTCATTCCCTGACGCCCTGATAGGAGCGGTGAATCGCCTGCTGTTTCT
GATCAACAAAGAGTATAAAGATCGACTGTTGAGGCACGAAGCGGGCCATT
TTCTAGTGGGGTACCTGTGTGGTCTCCCTGTGCTCACATACTCCGTCTCC
GGCCGATTGAACGCGGTGGAGTTTGCGCAGGTACTCTCCTTCGCTAAGGA
GGCTGCTGCTGCCGAGGCGGCTGCGGCCACTGGAGGCCCCTCCCTTCCAC
CCAGCCCCTTGGGTCCGTTGTCGTTCGAAGAGGCGGATCGATGGACGCCG
CGGGGGGTGTTGACAAAGGACGAGTTGTCCCAGCTGACTGTTGTGTCACT
TGCGGGGGTGGTGAGCGAATATATTGCCTTTGGTAAGGCGGAGGGAGGGG
GCAACGATTTAAGCCAGTTGCTGGCCTTGTTTAATTTGGCGGATCCGGGT
ATGACTGATCGGGATCAGGAACGGTGGCTGAATTGGGGCGTGCTGCAATC
GTACAACATGATCCGCCAGAACGAGAGGGCACTGGTCGCACTCATGGCGG
CCTTCGAGCGGCAAGAGAGCGTGGTAGCATGCATGCAGATCATTGAGAGG
GAGGGAGGGAGGTACCTCGATGACGAGTAAAAGAATGTGAGATGGATGTC
TCGGACTAAGATGCCTGTGGAAGTCCTCCACATCAAATAAAAGCCTCAAC
AGTCGTGGTGTCGGAATGACGGGGAGGGTGTGAACGACTATACCAAATGT
AAAATCGCAATAGACGCTTCATTGTGTGGGCCCTGACAGGTTCGCATACT
CACTTGGCCGTGCGTGCGGGCAGGTTTTTAATGCGTTGCTTCCTTGAAGT
CGCACCGACTTCAATGTATTTAGAAAAAGAAGATTGGTAAGATGGTGAGA
A

protein sequence of jgi.p|Nanoce1779_2|581997

>mRNA_3399-protein ID=mRNA_3399-protein|Name=jgi.p|Nanoce1779_2|581997|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MVSATTPVTCKRRLRNTCSRTTAAALLLALLAGSNQAFVLVPSRQAAAAA
AIRAQGRLQSQHHHICFPTIVRPTSTRLRASSSPPSSSPPPSIPPPPASD
ASQYWPLVEELVSSCLNEEDSVTDINNPTSFRPRQRDMDSSGQGVFSIGA
SVADTRLVDGLELMKVRKKKDGSVQSGFLKYWNSVRLEFYGVSRSDVRVY
ARMRERVERALGFTASPAVERVESGIAVVMALSVGSALTTLDKLPGPDIV
RWFATSFLVSIPFLYISLGLSFPDALIGAVNRLLFLINKEYKDRLLRHEA
GHFLVGYLCGLPVLTYSVSGRLNAVEFAQVLSFAKEAAAAEAAAATGGPS
LPPSPLGPLSFEEADRWTPRGVLTKDELSQLTVVSLAGVVSEYIAFGKAE
GGGNDLSQLLALFNLADPGMTDRDQERWLNWGVLQSYNMIRQNERALVAL
MAAFERQESVVACMQIIEREGGRYLDDE*

mRNA from alignment at scaffold_6:216117..218528+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3399 ID=mRNA_3399|Name=jgi.p|Nanoce1779_2|581997|organism=Nannochloropsis oceanica|type=mRNA|length=2412bp|location=Sequence derived from alignment at scaffold_6:216117..218528+ (Nannochloropsis oceanica)
TGGGAAAAGAGGAGGATAGTTGAGTTGTGGTTTTGGGAGAAGTACTGAAA
GCCGCGGCCCTCCATTTCTCGCGGCAGCGCTCCGCTCCAGGTCTCGGCAA
GCATCTGACCGTGGAATTCTCTGGAGCCGTTTGTAATGGCTATTTGGGTG
CACGGCGACGATGTGTCCTGGACATGTATGTGCTGTCAAGAGAGGCCCAA
ACATGACATAGGGGGGGATGACGACCATGACAAAACTCGCCACGCCCCTT
CATAAAAACCATGCCTCCCCGCACCAGCAGCTTGAGACTGGAATGGACTT
GATCTTCTCTTGCCTTGTACCGTGTACTTATGTGTCGTGTGAGGCAAACG
CAGGTGCCAGGTGTCCGTTGCCTCACTCCTTCTCCGTGCTTCAGCGAGGA
GTCCAAACATAGCCACCCCACACACTCGTAGCTCAACAACTTTGCAAAAA
CACACAGACGGCGGCACATTTTCCCAGCCGGAGCAGCAGCAGCATGGTCT
CTGCTACCACCCCAGTAACCTGTAAGCGGCGGTTGCGCAACACTTGCAGC
AGAACTACGGCTGCAGCCCTCCTCCTTGCACTCCTTGCCGGGTCAAATCA
AGCCTTTGTTCTTGTTCCTTCGAGACAAGCAGCAGCAGCAGCAGCAATTA
GAGCTCAGGGACGGCTACAGAGCCAACATCACCATATTTGCTTTCCCACA
ATCGTCCGCCCTACGTCGACGCGCCTTCGTGCTTCCTCCTCTCCCCCGTC
CTCCTCCCCCCCCCCTTCTATCCCTCCACCCCCTGCATCTGACGCCTCTC
AATATTGGCCCTTGGTCGAAGAGCTCGTCTCCTCCTGCCTGAACGAAGAA
GATAGTGTTACGGACATCAACAACCCCACGTCCTTCCGTCCGCGGCAACG
TGACATGGATTCAAGTGGACAGGGCGTCTTTTCGATAGGGGCCTCGGTGG
CTGACACCCGCTTGGTTGACGGCCTCGAGCTCATGAAAGTTAGAAAGAAG
AAGGACGGCAGCGTTCAATCAGGTTTTCTCAAGTACTGGAACTCGGTCCG
ACTCGAATTTTACGGTGTGTCGCGGAGTGACGTGAGGGTGTATGCCCGCA
TGAGGGAGAGGGTGGAGAGGGCCTTGGGGTTCACGGCCTCGCCGGCTGTC
GAGCGAGTGGAGAGCGGGATTGCAGTGGTGATGGCGCTTTCTGTCGGCTC
GGCACTAACCACGCTGGACAAATTACCAGGCCCTGACATCGTCCGGTGGT
TCGCGACGTCATTTTTGGTGTCCATCCCCTTTCTGTACATTTCTTTAGGA
TTGTCATTCCCTGACGCCCTGATAGGAGCGGTGAATCGCCTGCTGTTTCT
GATCAACAAAGAGTATAAAGATCGACTGTTGAGGCACGAAGCGGGCCATT
TTCTAGTGGGGTACCTGTGTGGTCTCCCTGTGCTCACATACTCCGTCTCC
GGCCGATTGAACGCGGTGGAGTTTGCGCAGGTACTCTCCTTCGCTAAGGA
GGCTGCTGCTGCCGAGGCGGCTGCGGCCACTGGAGGCCCCTCCCTTCCAC
CCAGCCCCTTGGGTCCGTTGTCGTTCGAAGAGGCGGATCGATGGACGCCG
CGGGGGGTGTTGACAAAGGACGAGTTGTCCCAGCTGACTGTTGTGTCACT
TGCGGGGGTGGTGAGCGAATATATTGCCTTTGGTAAGGCGGAGGGAGGGG
GCAACGATTTAAGCCAGTTGCTGGCCTTGTTTAATTTGGCGGATCCGGGT
ATGACTGATCGGGATCAGGAACGGTGGCTGAATTGTAAGGAGGGAGGGAG
GGAGGGAGGGAGCACGGGGGGGGGGGTCATGAAGTAGGGAAAGTGGAACG
GAGAGGGGACGGGATCGGTAAGGTTTTGGATTCATTGACGCACAAATGAG
GAGTGTTTGAAGGACAAGAGAAATCATAATTCGTTCTCATCCAACTCCTA
TACCGCCTCTCCTTTCCCTCCCTCCCTCCCTGCCTCCTTCCACAGGGGGC
GTGCTGCAATCGTACAACATGATCCGCCAGAACGAGAGGGCACTGGTCGC
ACTCATGGCGGCCTTCGAGCGGCAAGAGAGCGTGGTAGCATGCATGCAGA
TCATTGAGAGGGAGGGAGGGAGGTACCTCGATGACGAGTAAAAGAATGTG
AGATGGATGTCTCGGACTAAGATGCCTGTGGAAGTCCTCCACATCAAATA
AAAGCCTCAACAGTCGTGGTGTCGGAATGACGGGGAGGGTGTGAACGACT
ATACCAAATGTAAAATCGCAATAGACGCTTCATTGTGTGGGCCCTGACAG
GTTCGCATACTCACTTGGCCGTGCGTGCGGGCAGGTTTTTAATGCGTTGC
TTCCTTGAAGTCGCACCGACTTCAATGTATTTAGAAAAAGAAGATTGGTA
AGATGGTGAGAA

Coding sequence (CDS) from alignment at scaffold_6:216117..218528+

>mRNA_3399 ID=mRNA_3399|Name=jgi.p|Nanoce1779_2|581997|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_6:216117..218528+ (Nannochloropsis oceanica)
ATGGTCTCTGCTACCACCCCAGTAACCTGTAAGCGGCGGTTGCGCAACAC
TTGCAGCAGAACTACGGCTGCAGCCCTCCTCCTTGCACTCCTTGCCGGGT
CAAATCAAGCCTTTGTTCTTGTTCCTTCGAGACAAGCAGCAGCAGCAGCA
GCAATTAGAGCTCAGGGACGGCTACAGAGCCAACATCACCATATTTGCTT
TCCCACAATCGTCCGCCCTACGTCGACGCGCCTTCGTGCTTCCTCCTCTC
CCCCGTCCTCCTCCCCCCCCCCTTCTATCCCTCCACCCCCTGCATCTGAC
GCCTCTCAATATTGGCCCTTGGTCGAAGAGCTCGTCTCCTCCTGCCTGAA
CGAAGAAGATAGTGTTACGGACATCAACAACCCCACGTCCTTCCGTCCGC
GGCAACGTGACATGGATTCAAGTGGACAGGGCGTCTTTTCGATAGGGGCC
TCGGTGGCTGACACCCGCTTGGTTGACGGCCTCGAGCTCATGAAAGTTAG
AAAGAAGAAGGACGGCAGCGTTCAATCAGGTTTTCTCAAGTACTGGAACT
CGGTCCGACTCGAATTTTACGGTGTGTCGCGGAGTGACGTGAGGGTGTAT
GCCCGCATGAGGGAGAGGGTGGAGAGGGCCTTGGGGTTCACGGCCTCGCC
GGCTGTCGAGCGAGTGGAGAGCGGGATTGCAGTGGTGATGGCGCTTTCTG
TCGGCTCGGCACTAACCACGCTGGACAAATTACCAGGCCCTGACATCGTC
CGGTGGTTCGCGACGTCATTTTTGGTGTCCATCCCCTTTCTGTACATTTC
TTTAGGATTGTCATTCCCTGACGCCCTGATAGGAGCGGTGAATCGCCTGC
TGTTTCTGATCAACAAAGAGTATAAAGATCGACTGTTGAGGCACGAAGCG
GGCCATTTTCTAGTGGGGTACCTGTGTGGTCTCCCTGTGCTCACATACTC
CGTCTCCGGCCGATTGAACGCGGTGGAGTTTGCGCAGGTACTCTCCTTCG
CTAAGGAGGCTGCTGCTGCCGAGGCGGCTGCGGCCACTGGAGGCCCCTCC
CTTCCACCCAGCCCCTTGGGTCCGTTGTCGTTCGAAGAGGCGGATCGATG
GACGCCGCGGGGGGTGTTGACAAAGGACGAGTTGTCCCAGCTGACTGTTG
TGTCACTTGCGGGGGTGGTGAGCGAATATATTGCCTTTGGTAAGGCGGAG
GGAGGGGGCAACGATTTAAGCCAGTTGCTGGCCTTGTTTAATTTGGCGGA
TCCGGGTATGACTGATCGGGATCAGGAACGGTGGCTGAATTGGGGCGTGC
TGCAATCGTACAACATGATCCGCCAGAACGAGAGGGCACTGGTCGCACTC
ATGGCGGCCTTCGAGCGGCAAGAGAGCGTGGTAGCATGCATGCAGATCAT
TGAGAGGGAGGGAGGGAGGTACCTCGATGACGAGTAAATGGTCTCTGCTA
CCACCCCAGTAACCTGTAAGCGGCGGTTGCGCAACACTTGCAGCAGAACT
ACGGCTGCAGCCCTCCTCCTTGCACTCCTTGCCGGGTCAAATCAAGCCTT
TGTTCTTGTTCCTTCGAGACAAGCAGCAGCAGCAGCAGCAATTAGAGCTC
AGGGACGGCTACAGAGCCAACATCACCATATTTGCTTTCCCACAATCGTC
CGCCCTACGTCGACGCGCCTTCGTGCTTCCTCCTCTCCCCCGTCCTCCTC
CCCCCCCCCTTCTATCCCTCCACCCCCTGCATCTGACGCCTCTCAATATT
GGCCCTTGGTCGAAGAGCTCGTCTCCTCCTGCCTGAACGAAGAAGATAGT
GTTACGGACATCAACAACCCCACGTCCTTCCGTCCGCGGCAACGTGACAT
GGATTCAAGTGGACAGGGCGTCTTTTCGATAGGGGCCTCGGTGGCTGACA
CCCGCTTGGTTGACGGCCTCGAGCTCATGAAAGTTAGAAAGAAGAAGGAC
GGCAGCGTTCAATCAGGTTTTCTCAAGTACTGGAACTCGGTCCGACTCGA
ATTTTACGGTGTGTCGCGGAGTGACGTGAGGGTGTATGCCCGCATGAGGG
AGAGGGTGGAGAGGGCCTTGGGGTTCACGGCCTCGCCGGCTGTCGAGCGA
GTGGAGAGCGGGATTGCAGTGGTGATGGCGCTTTCTGTCGGCTCGGCACT
AACCACGCTGGACAAATTACCAGGCCCTGACATCGTCCGGTGGTTCGCGA
CGTCATTTTTGGTGTCCATCCCCTTTCTGTACATTTCTTTAGGATTGTCA
TTCCCTGACGCCCTGATAGGAGCGGTGAATCGCCTGCTGTTTCTGATCAA
CAAAGAGTATAAAGATCGACTGTTGAGGCACGAAGCGGGCCATTTTCTAG
TGGGGTACCTGTGTGGTCTCCCTGTGCTCACATACTCCGTCTCCGGCCGA
TTGAACGCGGTGGAGTTTGCGCAGGTACTCTCCTTCGCTAAGGAGGCTGC
TGCTGCCGAGGCGGCTGCGGCCACTGGAGGCCCCTCCCTTCCACCCAGCC
CCTTGGGTCCGTTGTCGTTCGAAGAGGCGGATCGATGGACGCCGCGGGGG
GTGTTGACAAAGGACGAGTTGTCCCAGCTGACTGTTGTGTCACTTGCGGG
GGTGGTGAGCGAATATATTGCCTTTGGTAAGGCGGAGGGAGGGGGCAACG
ATTTAAGCCAGTTGCTGGCCTTGTTTAATTTGGCGGATCCGGGTATGACT
GATCGGGATCAGGAACGGTGGCTGAATTGGGGCGTGCTGCAATCGTACAA
CATGATCCGCCAGAACGAGAGGGCACTGGTCGCACTCATGGCGGCCTTCG
AGCGGCAAGAGAGCGTGGTAGCATGCATGCAGATCATTGAGAGGGAGGGA
GGGAGGTACCTCGATGACGAGTAA

Synonyms

Publications