jgi.p|Nanoce1779_2|581995, mRNA_3398 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581995
Unique NamemRNA_3398
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length482
Alignment locationscaffold_6:215323..216110 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582081
TrackFilteredModels2
ProteinId581995
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:215323..216110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581995gene_3398Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581995mRNA_3398-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3398CDS_3398Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3398 ID=mRNA_3398|Name=jgi.p|Nanoce1779_2|581995|organism=Nannochloropsis oceanica|type=mRNA|length=482bp
AGGGGTTCGCCCGCACGCCAGGGGCACGCCCATTCGCGCACAAGCCATGG
GTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGAAGGAGGAGAAGGAAGGG
ACGGAAATGATCCATCTTACAAAGCCAGGCCAAAAGTACACGACGCCCAC
CCCTGGTGTCCCTGAACGCATCTTTTACGAAAGCCTGTACGAACAAAACC
CCGAGTCTTTTATGGCACAAGAATATTGCGTCCAATACGGTATCCTGGAA
GAAGACGAGGCCATGAAAATCTTCAAGAAGGTCCAAGCTCGCAAAGCCAA
GGGTGCCATTTACTCTCCTTCTCCCGTCAAGAAGTCCACAGCAGCAGCAG
CAGCAAAAAAAGGAGGAGTGGGGGGAGCGAAGAAAAAGAAAAGTCGGTTG
GATGATGATGCGCCGGTGGACACGGGCTTGATGGAGGGGGGAGTGGAGGG
GGTGGGGTCCATGAGCTTTGCTTAGAAAGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|581995

>mRNA_3398-protein ID=mRNA_3398-protein|Name=jgi.p|Nanoce1779_2|581995|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MGGDSKVSVVVKKEEKEGTEMIHLTKPGQKYTTPTPGVPERIFYESLYEQ
NPESFMAQEYCVQYGILEEDEAMKIFKKVQARKAKGAIYSPSPVKKSTAA
AAAKKGGVGGAKKKKSRLDDDAPVDTGLMEGGVEGVGSMSFA*
back to top

mRNA from alignment at scaffold_6:215323..216110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3398 ID=mRNA_3398|Name=jgi.p|Nanoce1779_2|581995|organism=Nannochloropsis oceanica|type=mRNA|length=788bp|location=Sequence derived from alignment at scaffold_6:215323..216110- (Nannochloropsis oceanica)
AGGGGTTCGCCCGCACGCCAGGGGCACGCCCATTCGCGCACAAGCCATGG
GTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGAAGGAGGAGAAGGAAGGG
ACGGAAATGATCCATCTTACAAAGCCAGGCCAAAAGTACACGACGCCCAC
CCCTGGTGTCCCTGGTGAGAGCTCTGCATGGGGAGGGAGGGAGAGGGGGA
GGGAGAGATGGGGGACGTGACCTGCCCTCGTCTCTCCTTTCTTCTCTTCG
TAACAAGAAATATGGTATTTTACGTTCTTTCCTTACTCTAAGGCATCGTA
CACGTATTCTCATTCTCTCCTTTTCATACTCCCTTGCTCGCATCCTTTCC
CTTCCCTCCACCCCTCCAGAACGCATCTTTTACGAAAGCCTGTACGAACA
AAACCCCGAGTCTTTTATGGCACAAGAATATTGCGTCCAATACGGTTAGG
AATTTCTTCCTCCCTCCCTTCTTCCTTCTCCTTTTCCCCATCCCAACCGT
CACACCCTAAGCTCCCTGCCCTCCCTCCCGCCCGCCCTCTCTCAGGTATC
CTGGAAGAAGACGAGGCCATGAAAATCTTCAAGAAGGTCCAAGCTCGCAA
AGCCAAGGGTGCCATTTACTCTCCTTCTCCCGTCAAGAAGTCCACAGCAG
CAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAGCGAAGAAAAAGAAAAGT
CGGTTGGATGATGATGCGCCGGTGGACACGGGCTTGATGGAGGGGGGAGT
GGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAAAGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_6:215323..216110-

>mRNA_3398 ID=mRNA_3398|Name=jgi.p|Nanoce1779_2|581995|organism=Nannochloropsis oceanica|type=CDS|length=1287bp|location=Sequence derived from alignment at scaffold_6:215323..216110- (Nannochloropsis oceanica)
GTATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAGAAGGTCCAAGCT
CGCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGTCAAGAAGTCCAC
AGCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAGCGAAGAAAAAGA
AAAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGCTTGATGGAGGGG
GGAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAACGCATCTTTTAC
GAAAGCCTGTACGAACAAAACCCCGAGTCTTTTATGGCACAAGAATATTG
CGTCCAATACGATGGGTGGGGACTCCAAGGTGTCGGTGGTTGTGAAGAAG
GAGGAGAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCAGGCCAAAA
GTACACGACGCCCACCCCTGGTGTCCCTGGTATCCTGGAAGAAGACGAGG
CCATGAAAATCTTCAAGAAGGTCCAAGCTCGCAAAGCCAAGGGTGCCATT
TACTCTCCTTCTCCCGTCAAGAAGTCCACAGCAGCAGCAGCAGCAAAAAA
AGGAGGAGTGGGGGGAGCGAAGAAAAAGAAAAGTCGGTTGGATGATGATG
CGCCGGTGGACACGGGCTTGATGGAGGGGGGAGTGGAGGGGGTGGGGTCC
ATGAGCTTTGCTTAGAACGCATCTTTTACGAAAGCCTGTACGAACAAAAC
CCCGAGTCTTTTATGGCACAAGAATATTGCGTCCAATACGATGGGTGGGG
ACTCCAAGGTGTCGGTGGTTGTGAAGAAGGAGGAGAAGGAAGGGACGGAA
ATGATCCATCTTACAAAGCCAGGCCAAAAGTACACGACGCCCACCCCTGG
TGTCCCTGGTATCCTGGAAGAAGACGAGGCCATGAAAATCTTCAAGAAGG
TCCAAGCTCGCAAAGCCAAGGGTGCCATTTACTCTCCTTCTCCCGTCAAG
AAGTCCACAGCAGCAGCAGCAGCAAAAAAAGGAGGAGTGGGGGGAGCGAA
GAAAAAGAAAAGTCGGTTGGATGATGATGCGCCGGTGGACACGGGCTTGA
TGGAGGGGGGAGTGGAGGGGGTGGGGTCCATGAGCTTTGCTTAGAACGCA
TCTTTTACGAAAGCCTGTACGAACAAAACCCCGAGTCTTTTATGGCACAA
GAATATTGCGTCCAATACGATGGGTGGGGACTCCAAGGTGTCGGTGGTTG
TGAAGAAGGAGGAGAAGGAAGGGACGGAAATGATCCATCTTACAAAGCCA
GGCCAAAAGTACACGACGCCCACCCCTGGTGTCCCTG
back to top
Synonyms
Publications