Properties
| Property Name | Value |
|---|
| TranscriptId | 359276 |
| Track | FilteredModels2 |
| ProteinId | 359190 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:211869..214203 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3397 ID=mRNA_3397|Name=jgi.p|Nanoce1779_2|359190|organism=Nannochloropsis oceanica|type=mRNA|length=1358bp
GGTAGAAAGATGTGTTGCTAGATTCCTTCCTTCTGCGCTTGTCTGTTCTG
TCTGTGGTCGTCATGGCTTGCACATCATGACCACGTCCTGCGCGTCGCAT
CTCCCCCAGTTTGATGCTCATGCTCTTTCCCTATTTCAGACAAAATCTGC
GATCAGGTTTCTGATGCCATCTTGGATGCCTGCGTCAAGGACGATGAGAA
CTCGCGCGTCGCCTGCGAGACCTGCACCAAGACCGGCATGGTCATGATCT
TCGGTGAGATCTCCACTGCTGCCACCGTCAACTACGAGCAGGTGATCCGT
GACACGATCAAGGAGATCGGGTACGACGACCCCGGGAAGGGCCTGGACTA
CAACACCATGAATGTGATCGTGGCCATCGAAGAGCAATCCCCCGATATCG
CCCAGTCGGTCGACTCCCGCACGGGCAACGTGGAGGACATCGGCGCCGGC
GACCAGGGAATCATGTTCGGCTATGCCACGGACGAGACGGAGGAGCTCAT
GCCTCTCACCCACCTGCTGGCCACCTCCATCGGGGCCCGTCTGACAGAGG
TGCGCAAGACAGGCGTGCTTGATTGGGTGCGCCCCGACGGCAAGACGCAA
GTCACCGTTGAGTACAAGGTGGAGGGCGGGAGGCCCGTGCCTCAACGGGT
CCACACGATCGTTATCTCGACGCAGCACTCGGAGGAGGTGACGCTGGAGA
AGATCCGCGAGGATTTGCTCGAGCACGTGATCAAGCCGGTGGTGCCTGCC
AAGTACCTGGACGACAAGACCATCTACCACCTGAACCCCTCGGGGCGTTT
CGTGATCGGTGGCCCACACGGGGACGCCGGCTTAACGGGCAGGAAGATCA
TCATCGACACGTATGGCGGGTGGGGCGCCCATGGTGGCGGTGCCTTCTCG
GGCAAGGACACGACCAAAGTGGATCGCTCGGCGGCGTACGCGGCCCGTTG
GGTGGCCAAGAGCCTCGTGGCGGCCAAACTGTGCCATCGGGTGCTCGTGC
AGTTGTCCTATGCCATTGGCGTGGCTCACCCCCTGTCGGTGTTTGTCGAT
TCGTACGGCACGGGCAAGACGGCCTCAGGAAAGTCGGACTCGGAGCTGTG
CAAAATCGTCGAGAAGAATTTCGACCTCCGCCCCGGCTGCATCCAGCGCG
ACCTGAACCTGAAGCGCCCCATCATGACCAAGACGGCGGCTTACGGACAC
TTCGGCCGAAACGACCCGGATTTCACTTGGGAGCAGGTGAAGACTCTCAA
CATTTAAATTTGAGAGGGCGGGAGGGAAGGAGGGACGGAAGGAGGGAGGG
GTAGAGTGAGGGATGATGGGGTGGGTCTGAGTCACGTTTCCATCCTCGGG
GTTCTTTC back to topprotein sequence of jgi.p|Nanoce1779_2|359190 >mRNA_3397-protein ID=mRNA_3397-protein|Name=jgi.p|Nanoce1779_2|359190|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MVMIFGEISTAATVNYEQVIRDTIKEIGYDDPGKGLDYNTMNVIVAIEEQ
SPDIAQSVDSRTGNVEDIGAGDQGIMFGYATDETEELMPLTHLLATSIGA
RLTEVRKTGVLDWVRPDGKTQVTVEYKVEGGRPVPQRVHTIVISTQHSEE
VTLEKIREDLLEHVIKPVVPAKYLDDKTIYHLNPSGRFVIGGPHGDAGLT
GRKIIIDTYGGWGAHGGGAFSGKDTTKVDRSAAYAARWVAKSLVAAKLCH
RVLVQLSYAIGVAHPLSVFVDSYGTGKTASGKSDSELCKIVEKNFDLRPG
CIQRDLNLKRPIMTKTAAYGHFGRNDPDFTWEQVKTLNI* back to topmRNA from alignment at scaffold_6:211869..214203+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3397 ID=mRNA_3397|Name=jgi.p|Nanoce1779_2|359190|organism=Nannochloropsis oceanica|type=mRNA|length=2335bp|location=Sequence derived from alignment at scaffold_6:211869..214203+ (Nannochloropsis oceanica)
GGTAGAAAGATGTGTTGCTAGATTCCTTCCTTCTGCGCTTGTCTGTTCTG
TCTGTGGTCGTCATGGCTTGCACATCATGACCACGTCCTGCGCGTCGCAT
CTCCCCCAGTTTGATGCTCATGCTCTTTCCCTATTTCAGACAAAATCTGC
GATCAGGTTTCTGATGCCATCTTGGATGCCTGCGTCAAGGACGATGAGAA
CTCGCGCGTCGCCTGCGGTACGTTTGCAGGCTGGGAGGGCGGGGAGGAAA
AAAGGGAGGCGCTTGGCAAGATCCTTGCATCCGCATCCTTGCATCCGCAG
ATGCGTCCTCGTGCTTGTGAAAGTGAAGATGTCGTTAAACACGTCACTGC
GTCGCACTGACATAATCTTCTCCCCCTATCGTTGCTACCCACCTCTCCCC
GCAGAGACCTGCACCAAGACCGGCATGGTCATGATCTTCGGTGAGATCTC
CACTGCTGCCACCGTCAACTACGAGCAGGTATGCACTCTGCGTTGTACAT
TCCTTCCTTTCCTCCTTCCTTGCCCTCCTTCTTCCCCTCCTCCCTTCGTC
CTTCCAGTTCTTTCCTCCCTTTCCAATTCTGTGACCGACCCGTGGCCGTC
ACCTTCCAATCGATTGACCTTTTTATTGCCTTCTCTCTCATCTTCTCTGC
CTTTCACCTCACTTCACCCGGACAATCAACTTATACTTTGCCACACGCTC
ATCCCTTCGTCCATCGCTCCTTCCGTCCCTCTTTCCCTCCCCCGCCTTTC
CAGGTGATCCGTGACACGATCAAGGAGATCGGGTACGACGACCCCGGGAA
GGGCCTGGACTACAACACCATGAATGTGATCGTGGCCATCGAAGAGCAAT
CCCCCGATATCGCCCAGTCGGTCGACTCCCGCACGGGCAACGTGGAGGAC
ATCGGCGCCGGCGACCAGGGAATCATGTTCGGGTGGGTAAAAGAGGGAGG
AAAGGGAAGAAGGGGAGAAAGGGTAATAAGTGACACGAATGTACTTTTAA
TCCATCATTATTGTTTTGTCTCCTCACACTATGTTCTAAAGCGCGGTGTT
CAACTGATCTTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCTATG
CCACGGACGAGACGGAGGAGCTCATGCCTCTCACCCACCTGCTGGCCACC
TCCATCGGGGCCCGTCTGACAGAGGTGCGCAAGACAGGCGTGCTTGATTG
GGTGCGCCCCGACGGCAAGACGCAAGTCACCGTTGAGGTAGGTGGGGAGG
GAGGGAGGGAGGGAGGGAGGGAAGGGAGGGAGAGGAGGGAGAGGGAAGGA
GGTATGGATGTGGGGTGGGGGAAGGAGGTAGAGGAGATGGCAAGGAGGCA
AGAAACGAGGCGACATATGATACGGTCGACTCACCTTTCTCCCTCCCTCT
CTCCCTCCCTTCCTCAGTACAAGGTGGAGGGCGGGAGGCCCGTGCCTCAA
CGGGTCCACACGATCGTTATCTCGACGCAGCACTCGGAGGAGGTGACGCT
GGAGAAGATCCGCGAGGATTTGCTCGAGCACGTGATCAAGCCGGTGGTGC
CTGCCAAGTACCTGGACGACAAGACCATCTACCACCTGAACCCCTCGGGG
CGTTTCGTGATCGGTGGCCCACACGGGGACGCCGGCTTAACGGGCAGGAA
GATCATCATCGACACGTATGGCGGGTGGGGCGCCCATGGTGGCGGTGCCT
TCTCGGGCAAGGACACGACCAAAGTGGATCGCTCGGCGGCGTACGCGGCC
CGTTGGGTGGCCAAGAGCCTCGTGGCGGCCAAACTGTGCCATCGGGTGCT
CGTGCAGTTGTCCTATGCCATTGGCGTGGCTCACCCCCTGTCGGTGTTTG
TCGATTCGTACGGCACGGGCAAGACGGCCTCAGGAAAGTCGGACTCGGAG
CTGTGCAAAATCGTCGAGAAGAATTTCGACCTCCGCCCCGGGTATGTGCC
CTCTTTGCTTTTGTGGCCCTGCCCTCTCCTTCCCTTCCCTCTCCTTCCCT
CCCTCCCTCCCTCCCTCCCTCCCGCCTCCCGCGTGACGTGCACCTGGAAC
CCTATTATGAGCAAAACCACTGCGACATTCCACTCATCCTACTCTCCTCC
CTCTTCCCCACAGCTGCATCCAGCGCGACCTGAACCTGAAGCGCCCCATC
ATGACCAAGACGGCGGCTTACGGACACTTCGGCCGAAACGACCCGGATTT
CACTTGGGAGCAGGTGAAGACTCTCAACATTTAAATTTGAGAGGGCGGGA
GGGAAGGAGGGACGGAAGGAGGGAGGGGTAGAGTGAGGGATGATGGGGTG
GGTCTGAGTCACGTTTCCATCCTCGGGGTTCTTTC back to topCoding sequence (CDS) from alignment at scaffold_6:211869..214203+ >mRNA_3397 ID=mRNA_3397|Name=jgi.p|Nanoce1779_2|359190|organism=Nannochloropsis oceanica|type=CDS|length=5100bp|location=Sequence derived from alignment at scaffold_6:211869..214203+ (Nannochloropsis oceanica)
ATGGTCATGATCTTCGGTGAGATCTCCACTGCTGCCACCGTCAACTACGA
GCAGGTGATCCGTGACACGATCAAGGAGATCGGGTACGACGACCCCGGGA
AGGGCCTGGACTACAACACCATGAATGTGATCGTGGCCATCGAAGAGCAA
TCCCCCGATATCGCCCAGTCGGTCGACTCCCGCACGGGCAACGTGGAGGA
CATCGGCGCCGGCGACCAGGGAATCATGTTCGGCTATGCCACGGACGAGA
CGGAGGAGCTCATGCCTCTCACCCACCTGCTGGCCACCTCCATCGGGGCC
CGTCTGACAGAGGTGCGCAAGACAGGCGTGCTTGATTGGGTGCGCCCCGA
CGGCAAGACGCAAGTCACCGTTGAGTACAAGGTGGAGGGCGGGAGGCCCG
TGCCTCAACGGGTCCACACGATCGTTATCTCGACGCAGCACTCGGAGGAG
GTGACGCTGGAGAAGATCCGCGAGGATTTGCTCGAGCACGTGATCAAGCC
GGTGGTGCCTGCCAAGTACCTGGACGACAAGACCATCTACCACCTGAACC
CCTCGGGGCGTTTCGTGATCGGTGGCCCACACGGGGACGCCGGCTTAACG
GGCAGGAAGATCATCATCGACACGTATGGCGGGTGGGGCGCCCATGGTGG
CGGTGCCTTCTCGGGCAAGGACACGACCAAAGTGGATCGCTCGGCGGCGT
ACGCGGCCCGTTGGGTGGCCAAGAGCCTCGTGGCGGCCAAACTGTGCCAT
CGGGTGCTCGTGCAGTTGTCCTATGCCATTGGCGTGGCTCACCCCCTGTC
GGTGTTTGTCGATTCGTACGGCACGGGCAAGACGGCCTCAGGAAAGTCGG
ACTCGGAGCTGTGCAAAATCGTCGAGAAGAATTTCGACCTCCGCCCCGGC
TGCATCCAGCGCGACCTGAACCTGAAGCGCCCCATCATGACCAAGACGGC
GGCTTACGGACACTTCGGCCGAAACGACCCGGATTTCACTTGGGAGCAGG
TGAAGACTCTCAACATTTAAATGGTCATGATCTTCGGTGAGATCTCCACT
GCTGCCACCGTCAACTACGAGCAGGTGATCCGTGACACGATCAAGGAGAT
CGGGTACGACGACCCCGGGAAGGGCCTGGACTACAACACCATGAATGTGA
TCGTGGCCATCGAAGAGCAATCCCCCGATATCGCCCAGTCGGTCGACTCC
CGCACGGGCAACGTGGAGGACATCGGCGCCGGCGACCAGGGAATCATGTT
CGGCTATGCCACGGACGAGACGGAGGAGCTCATGCCTCTCACCCACCTGC
TGGCCACCTCCATCGGGGCCCGTCTGACAGAGGTGCGCAAGACAGGCGTG
CTTGATTGGGTGCGCCCCGACGGCAAGACGCAAGTCACCGTTGAGTACAA
GGTGGAGGGCGGGAGGCCCGTGCCTCAACGGGTCCACACGATCGTTATCT
CGACGCAGCACTCGGAGGAGGTGACGCTGGAGAAGATCCGCGAGGATTTG
CTCGAGCACGTGATCAAGCCGGTGGTGCCTGCCAAGTACCTGGACGACAA
GACCATCTACCACCTGAACCCCTCGGGGCGTTTCGTGATCGGTGGCCCAC
ACGGGGACGCCGGCTTAACGGGCAGGAAGATCATCATCGACACGTATGGC
GGGTGGGGCGCCCATGGTGGCGGTGCCTTCTCGGGCAAGGACACGACCAA
AGTGGATCGCTCGGCGGCGTACGCGGCCCGTTGGGTGGCCAAGAGCCTCG
TGGCGGCCAAACTGTGCCATCGGGTGCTCGTGCAGTTGTCCTATGCCATT
GGCGTGGCTCACCCCCTGTCGGTGTTTGTCGATTCGTACGGCACGGGCAA
GACGGCCTCAGGAAAGTCGGACTCGGAGCTGTGCAAAATCGTCGAGAAGA
ATTTCGACCTCCGCCCCGGCTGCATCCAGCGCGACCTGAACCTGAAGCGC
CCCATCATGACCAAGACGGCGGCTTACGGACACTTCGGCCGAAACGACCC
GGATTTCACTTGGGAGCAGGTGAAGACTCTCAACATTTAAATGGTCATGA
TCTTCGGTGAGATCTCCACTGCTGCCACCGTCAACTACGAGCAGGTGATC
CGTGACACGATCAAGGAGATCGGGTACGACGACCCCGGGAAGGGCCTGGA
CTACAACACCATGAATGTGATCGTGGCCATCGAAGAGCAATCCCCCGATA
TCGCCCAGTCGGTCGACTCCCGCACGGGCAACGTGGAGGACATCGGCGCC
GGCGACCAGGGAATCATGTTCGGCTATGCCACGGACGAGACGGAGGAGCT
CATGCCTCTCACCCACCTGCTGGCCACCTCCATCGGGGCCCGTCTGACAG
AGGTGCGCAAGACAGGCGTGCTTGATTGGGTGCGCCCCGACGGCAAGACG
CAAGTCACCGTTGAGTACAAGGTGGAGGGCGGGAGGCCCGTGCCTCAACG
GGTCCACACGATCGTTATCTCGACGCAGCACTCGGAGGAGGTGACGCTGG
AGAAGATCCGCGAGGATTTGCTCGAGCACGTGATCAAGCCGGTGGTGCCT
GCCAAGTACCTGGACGACAAGACCATCTACCACCTGAACCCCTCGGGGCG
TTTCGTGATCGGTGGCCCACACGGGGACGCCGGCTTAACGGGCAGGAAGA
TCATCATCGACACGTATGGCGGGTGGGGCGCCCATGGTGGCGGTGCCTTC
TCGGGCAAGGACACGACCAAAGTGGATCGCTCGGCGGCGTACGCGGCCCG
TTGGGTGGCCAAGAGCCTCGTGGCGGCCAAACTGTGCCATCGGGTGCTCG
TGCAGTTGTCCTATGCCATTGGCGTGGCTCACCCCCTGTCGGTGTTTGTC
GATTCGTACGGCACGGGCAAGACGGCCTCAGGAAAGTCGGACTCGGAGCT
GTGCAAAATCGTCGAGAAGAATTTCGACCTCCGCCCCGGCTGCATCCAGC
GCGACCTGAACCTGAAGCGCCCCATCATGACCAAGACGGCGGCTTACGGA
CACTTCGGCCGAAACGACCCGGATTTCACTTGGGAGCAGGTGAAGACTCT
CAACATTTAAATGGTCATGATCTTCGGTGAGATCTCCACTGCTGCCACCG
TCAACTACGAGCAGGTGATCCGTGACACGATCAAGGAGATCGGGTACGAC
GACCCCGGGAAGGGCCTGGACTACAACACCATGAATGTGATCGTGGCCAT
CGAAGAGCAATCCCCCGATATCGCCCAGTCGGTCGACTCCCGCACGGGCA
ACGTGGAGGACATCGGCGCCGGCGACCAGGGAATCATGTTCGGCTATGCC
ACGGACGAGACGGAGGAGCTCATGCCTCTCACCCACCTGCTGGCCACCTC
CATCGGGGCCCGTCTGACAGAGGTGCGCAAGACAGGCGTGCTTGATTGGG
TGCGCCCCGACGGCAAGACGCAAGTCACCGTTGAGTACAAGGTGGAGGGC
GGGAGGCCCGTGCCTCAACGGGTCCACACGATCGTTATCTCGACGCAGCA
CTCGGAGGAGGTGACGCTGGAGAAGATCCGCGAGGATTTGCTCGAGCACG
TGATCAAGCCGGTGGTGCCTGCCAAGTACCTGGACGACAAGACCATCTAC
CACCTGAACCCCTCGGGGCGTTTCGTGATCGGTGGCCCACACGGGGACGC
CGGCTTAACGGGCAGGAAGATCATCATCGACACGTATGGCGGGTGGGGCG
CCCATGGTGGCGGTGCCTTCTCGGGCAAGGACACGACCAAAGTGGATCGC
TCGGCGGCGTACGCGGCCCGTTGGGTGGCCAAGAGCCTCGTGGCGGCCAA
ACTGTGCCATCGGGTGCTCGTGCAGTTGTCCTATGCCATTGGCGTGGCTC
ACCCCCTGTCGGTGTTTGTCGATTCGTACGGCACGGGCAAGACGGCCTCA
GGAAAGTCGGACTCGGAGCTGTGCAAAATCGTCGAGAAGAATTTCGACCT
CCGCCCCGGCTGCATCCAGCGCGACCTGAACCTGAAGCGCCCCATCATGA
CCAAGACGGCGGCTTACGGACACTTCGGCCGAAACGACCCGGATTTCACT
TGGGAGCAGGTGAAGACTCTCAACATTTAAATGGTCATGATCTTCGGTGA
GATCTCCACTGCTGCCACCGTCAACTACGAGCAGGTGATCCGTGACACGA
TCAAGGAGATCGGGTACGACGACCCCGGGAAGGGCCTGGACTACAACACC
ATGAATGTGATCGTGGCCATCGAAGAGCAATCCCCCGATATCGCCCAGTC
GGTCGACTCCCGCACGGGCAACGTGGAGGACATCGGCGCCGGCGACCAGG
GAATCATGTTCGGCTATGCCACGGACGAGACGGAGGAGCTCATGCCTCTC
ACCCACCTGCTGGCCACCTCCATCGGGGCCCGTCTGACAGAGGTGCGCAA
GACAGGCGTGCTTGATTGGGTGCGCCCCGACGGCAAGACGCAAGTCACCG
TTGAGTACAAGGTGGAGGGCGGGAGGCCCGTGCCTCAACGGGTCCACACG
ATCGTTATCTCGACGCAGCACTCGGAGGAGGTGACGCTGGAGAAGATCCG
CGAGGATTTGCTCGAGCACGTGATCAAGCCGGTGGTGCCTGCCAAGTACC
TGGACGACAAGACCATCTACCACCTGAACCCCTCGGGGCGTTTCGTGATC
GGTGGCCCACACGGGGACGCCGGCTTAACGGGCAGGAAGATCATCATCGA
CACGTATGGCGGGTGGGGCGCCCATGGTGGCGGTGCCTTCTCGGGCAAGG
ACACGACCAAAGTGGATCGCTCGGCGGCGTACGCGGCCCGTTGGGTGGCC
AAGAGCCTCGTGGCGGCCAAACTGTGCCATCGGGTGCTCGTGCAGTTGTC
CTATGCCATTGGCGTGGCTCACCCCCTGTCGGTGTTTGTCGATTCGTACG
GCACGGGCAAGACGGCCTCAGGAAAGTCGGACTCGGAGCTGTGCAAAATC
GTCGAGAAGAATTTCGACCTCCGCCCCGGCTGCATCCAGCGCGACCTGAA
CCTGAAGCGCCCCATCATGACCAAGACGGCGGCTTACGGACACTTCGGCC
GAAACGACCCGGATTTCACTTGGGAGCAGGTGAAGACTCTCAACATTTAA back to top
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