jgi.p|Nanoce1779_2|628833, mRNA_3396 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628833
Unique NamemRNA_3396
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length906
Alignment locationscaffold_6:209746..211053 -

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Properties
Property NameValue
TranscriptId628919
TrackFilteredModels2
ProteinId628833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:209746..211053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628833gene_3396Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628833mRNA_3396-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3396CDS_3396Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3396 ID=mRNA_3396|Name=jgi.p|Nanoce1779_2|628833|organism=Nannochloropsis oceanica|type=mRNA|length=906bp
CTCTCCATGGAAACTTCAGCAGGAACAGCAGCGGCCCCTCAACCACCAAG
GCGGCAACATTATGGCTCCTTCATGTTGGCAGAAGACGACGAGGATGAGG
ATGACGATGGTACAGGGCTGCTCGGTCACGGCGTGAGCTCTTGGGGCCGA
TGGCGTAAGCGGGCCGGGACATGCCTAGGCGACACTCTCGTCGCTGTCGC
GGCGATTTCTGTTGCCGTGTTTATCACAGTGATAGACAATTTACCCTACG
GCTTGCTCCTCTTCCCACCCTCATTCAATCTGGGTCCCCTTGGGGTGCAA
CTTGTCCTGGTGTCTGCCATCGTCTCCCAAGCCGTCTTTGGCGCCATGTC
CACTTTCTCTTGTGCCCTCGGGAGCTTCATCATCGAAAACGTTGCCTTTC
TTCGAACCATGAGCACGTCCCTCTACAGTCAACTCCGCGACGAGGGTCGA
ACGGACGAGGCCTTGATGACGATCTTATTCTGCTTCTCCTTCTCCACCCT
CCTGACGGGAGCAGCCTTCTACGCCTTGGGCGTGCTGCAGCTTGGCAAAG
TCTCATCCTTCGTGCCCCAACATGTCGTGCTTGGATGCATTGGTGGCATG
GGGGTATTCATCGTTTGTGAGGGTATAGGGATCACGACAGGGATCGACTG
GGGGTGGGAGCCCAGTGTCCTCCTTGCCCAGCTCCACCCTTCGCCGTTTC
TCAAGATCTTGGTAACCGGCTTCTTAACCGTTAGTCTGAGTCTGTTGAAG
CAGAAGATAAAGCACCCCATTCTGACGCCGGTATTTTTCCTAGCGATCCC
GGTGGTCTTCTACGCGGCCTTGTACCCGTTGGGGGTGTCGACGGACGAGG
CGCGGGACAGCGGGTGGTTGTTCTCGTTTGCCACGCCGGGGGGGGGGGGA
CGAGGG
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protein sequence of jgi.p|Nanoce1779_2|628833

>mRNA_3396-protein ID=mRNA_3396-protein|Name=jgi.p|Nanoce1779_2|628833|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
METSAGTAAAPQPPRRQHYGSFMLAEDDEDEDDDGTGLLGHGVSSWGRWR
KRAGTCLGDTLVAVAAISVAVFITVIDNLPYGLLLFPPSFNLGPLGVQLV
LVSAIVSQAVFGAMSTFSCALGSFIIENVAFLRTMSTSLYSQLRDEGRTD
EALMTILFCFSFSTLLTGAAFYALGVLQLGKVSSFVPQHVVLGCIGGMGV
FIVCEGIGITTGIDWGWEPSVLLAQLHPSPFLKILVTGFLTVSLSLLKQK
IKHPILTPVFFLAIPVVFYAALYPLGVSTDEARDSGWLFSFATPGGGGRG
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mRNA from alignment at scaffold_6:209746..211053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3396 ID=mRNA_3396|Name=jgi.p|Nanoce1779_2|628833|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp|location=Sequence derived from alignment at scaffold_6:209746..211053- (Nannochloropsis oceanica)
CTCTCCATGGAAACTTCAGCAGGAACAGCAGCGGCCCCTCAACCACCAAG
GCGGCAACATTATGGCTCCTTCATGTTGGCAGAAGACGACGAGGATGAGG
ATGACGATGGTACAGGGCTGCTCGGTCACGGCGTGAGCTCTTGGGGCCGA
TGGCGTAAGCGGGCCGGGACATGCCTAGGCGACACTCTCGTCGCTGTCGC
GGCGATTTCTGTTGCCGTGTTTATCACAGGTAGGCACCCAAGAAGGACGA
CAGTGTGAACGCAAGCTTGTACGGAAATGAAATCTGCACACAGAAGGAGG
TTCAAATTCCGCGGCTTCGCCGCCGCCTTGATCCTTATACTCCTCTTCAC
CACAAGGAAGAAAACCCTCCCCTCCTCCCCCTTGTCCTCCTCCTCGCTAG
CATAAACGTATGAGGGCAAAAACACAAACCGAACGCTCACAGCCAACGAG
CTCACCGCAATCCACATATTACACCACAGTGATAGACAATTTACCCTACG
GCTTGCTCCTCTTCCCACCCTCATTCAATCTGGGTCCCCTTGGGGTGCAA
CTTGTCCTGGTGTCTGCCATCGTCTCCCAAGCCGTCTTTGGCGCCATGTC
CACTTTCTCTTGTGCCCTCGGGAGCTTCATCATCGAAAACGTTGCCTTTC
TTCGAACCATGAGCACGTCCCTCTACAGTCAACTCCGCGACGAGGGTCGA
ACGGACGAGGCCTTGATGACGATCTTATTCTGCTTCTCCTTCTCCACCCT
CCTGACGGGAGCAGCCTTCTACGCCTTGGGCGTGCTGCAGCTTGGCAAAG
TCTCATCCTTCGTGCCCCAACATGTCGTGCTTGGATGCATTGGTGGCATG
GGGGTATTCATCGTGTGAGTAAAGAATGGGAGAGATGGGGCAAAGCAGGG
GAAATGCCTGTACTCAATGACAAGCACAAGCAACGATGCCTTTATTCCTC
ATTTACCAACCCATCCCACTCACCAAAACTCGCCCATTTCTGCATACAAA
CGCTAACAATTCGCAGTTGTGAGGGTATAGGGATCACGACAGGGATCGAC
TGGGGGTGGGAGCCCAGTGTCCTCCTTGCCCAGCTCCACCCTTCGCCGTT
TCTCAAGATCTTGGTAACCGGCTTCTTAACCGTTAGTCTGAGTCTGTTGA
AGCAGAAGATAAAGCACCCCATTCTGACGCCGGTATTTTTCCTAGCGATC
CCGGTGGTCTTCTACGCGGCCTTGTACCCGTTGGGGGTGTCGACGGACGA
GGCGCGGGACAGCGGGTGGTTGTTCTCGTTTGCCACGCCGGGGGGGGGGG
GACGAGGG
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Coding sequence (CDS) from alignment at scaffold_6:209746..211053-

>mRNA_3396 ID=mRNA_3396|Name=jgi.p|Nanoce1779_2|628833|organism=Nannochloropsis oceanica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_6:209746..211053- (Nannochloropsis oceanica)
TTGTGAGGGTATAGGGATCACGACAGGGATCGACTGGGGGTGGGAGCCCA
GTGTCCTCCTTGCCCAGCTCCACCCTTCGCCGTTTCTCAAGATCTTGGTA
ACCGGCTTCTTAACCGTTAGTCTGAGTCTGTTGAAGCAGAAGATAAAGCA
CCCCATTCTGACGCCGGTATTTTTCCTAGCGATCCCGGTGGTCTTCTACG
CGGCCTTGTACCCGTTGGGGGTGTCGACGGACGAGGCGCGGGACAGCGGG
TGGTTGTTCTCGTTTGCCACGCCGGGGGGGGGGGGACGAGGGTGATAGAC
AATTTACCCTACGGCTTGCTCCTCTTCCCACCCTCATTCAATCTGGGTCC
CCTTGGGGTGCAACTTGTCCTGGTGTCTGCCATCGTCTCCCAAGCCGTCT
TTGGCGCCATGTCCACTTTCTCTTGTGCCCTCGGGAGCTTCATCATCGAA
AACGTTGCCTTTCTTCGAACCATGAGCACGTCCCTCTACAGTCAACTCCG
CGACGAGGGTCGAACGGACGAGGCCTTGATGACGATCTTATTCTGCTTCT
CCTTCTCCACCCTCCTGACGGGAGCAGCCTTCTACGCCTTGGGCGTGCTG
CAGCTTGGCAAAGTCTCATCCTTCGTGCCCCAACATGTCGTGCTTGGATG
CATTGGTGGCATGGGGGTATTCATCGTATGGAAACTTCAGCAGGAACAGC
AGCGGCCCCTCAACCACCAAGGCGGCAACATTATGGCTCCTTCATGTTGG
CAGAAGACGACGAGGATGAGGATGACGATGGTACAGGGCTGCTCGGTCAC
GGCGTGAGCTCTTGGGGCCGATGGCGTAAGCGGGCCGGGACATGCCTAGG
CGACACTCTCGTCGCTGTCGCGGCGATTTCTGTTGCCGTGTTTATCACAG
TTGTGAGGGTATAGGGATCACGACAGGGATCGACTGGGGGTGGGAGCCCA
GTGTCCTCCTTGCCCAGCTCCACCCTTCGCCGTTTCTCAAGATCTTGGTA
ACCGGCTTCTTAACCGTTAGTCTGAGTCTGTTGAAGCAGAAGATAAAGCA
CCCCATTCTGACGCCGGTATTTTTCCTAGCGATCCCGGTGGTCTTCTACG
CGGCCTTGTACCCGTTGGGGGTGTCGACGGACGAGGCGCGGGACAGCGGG
TGGTTGTTCTCGTTTGCCACGCCGGGGGGGGGGGGACGAGGGTGATAGAC
AATTTACCCTACGGCTTGCTCCTCTTCCCACCCTCATTCAATCTGGGTCC
CCTTGGGGTGCAACTTGTCCTGGTGTCTGCCATCGTCTCCCAAGCCGTCT
TTGGCGCCATGTCCACTTTCTCTTGTGCCCTCGGGAGCTTCATCATCGAA
AACGTTGCCTTTCTTCGAACCATGAGCACGTCCCTCTACAGTCAACTCCG
CGACGAGGGTCGAACGGACGAGGCCTTGATGACGATCTTATTCTGCTTCT
CCTTCTCCACCCTCCTGACGGGAGCAGCCTTCTACGCCTTGGGCGTGCTG
CAGCTTGGCAAAGTCTCATCCTTCGTGCCCCAACATGTCGTGCTTGGATG
CATTGGTGGCATGGGGGTATTCATCGTATGGAAACTTCAGCAGGAACAGC
AGCGGCCCCTCAACCACCAAGGCGGCAACATTATGGCTCCTTCATGTTGG
CAGAAGACGACGAGGATGAGGATGACGATGGTACAGGGCTGCTCGGTCAC
GGCGTGAGCTCTTGGGGCCGATGGCGTAAGCGGGCCGGGACATGCCTAGG
CGACACTCTCGTCGCTGTCGCGGCGATTTCTGTTGCCGTGTTTATCACAG
TTGTGAGGGTATAGGGATCACGACAGGGATCGACTGGGGGTGGGAGCCCA
GTGTCCTCCTTGCCCAGCTCCACCCTTCGCCGTTTCTCAAGATCTTGGTA
ACCGGCTTCTTAACCGTTAGTCTGAGTCTGTTGAAGCAGAAGATAAAGCA
CCCCATTCTGACGCCGGTATTTTTCCTAGCGATCCCGGTGGTCTTCTACG
CGGCCTTGTACCCGTTGGGGGTGTCGACGGACGAGGCGCGGGACAGCGGG
TGGTTGTTCTCGTTTGCCACGCCGGGGGGGGGGGGACGAGGGTGATAGAC
AATTTACCCTACGGCTTGCTCCTCTTCCCACCCTCATTCAATCTGGGTCC
CCTTGGGGTGCAACTTGTCCTGGTGTCTGCCATCGTCTCCCAAGCCGTCT
TTGGCGCCATGTCCACTTTCTCTTGTGCCCTCGGGAGCTTCATCATCGAA
AACGTTGCCTTTCTTCGAACCATGAGCACGTCCCTCTACAGTCAACTCCG
CGACGAGGGTCGAACGGACGAGGCCTTGATGACGATCTTATTCTGCTTCT
CCTTCTCCACCCTCCTGACGGGAGCAGCCTTCTACGCCTTGGGCGTGCTG
CAGCTTGGCAAAGTCTCATCCTTCGTGCCCCAACATGTCGTGCTTGGATG
CATTGGTGGCATGGGGGTATTCATCGTATGGAAACTTCAGCAGGAACAGC
AGCGGCCCCTCAACCACCAAGGCGGCAACATTATGGCTCCTTCATGTTGG
CAGAAGACGACGAGGATGAGGATGACGATGGTACAGGGCTGCTCGGTCAC
GGCGTGAGCTCTTGGGGCCGATGGCGTAAGCGGGCCGGGACATGCCTAGG
CGACACTCTCGTCGCTGTCGCGGCGATTTCTGTTGCCGTGTTTATCACAG
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Synonyms
Publications