jgi.p|Nanoce1779_2|581981, mRNA_3394 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581981
Unique NamemRNA_3394
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1147
Alignment locationscaffold_6:206666..207812 -

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Properties
Property NameValue
TranscriptId582067
TrackFilteredModels2
ProteinId581981
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:206666..207812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581981gene_3394Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581981mRNA_3394-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3394CDS_3394Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3394 ID=mRNA_3394|Name=jgi.p|Nanoce1779_2|581981|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGAAGAGG
AAGAGGAAGAGGAAGTAGGGAGGGGGCTGTCCGTGTAGGTGGAGGAGGAA
GAGGAGGAGGGAAAGGTGGAGGAAGGGGGGGAGGACAAGGGCGAGGACGA
GGACGAGGCTGGTCGTCGTTGATGAGGTCGAAGCGGATGCATCATTTCTC
CAAAGACCTGAACAAGGCATTCACGTTCTGTGAGGATGCGGTGCTGGCGG
CGTTAGGGGCGGGAGATGAGCGGGAGGAGGAGGAAGACAGACAGGAGGGC
GAGATTCAAATGCAGGAGGGAGGGCAGGGATGGCGCAGCGACGGAGTGGC
CGATCCTTCCAGCAGCCCCGACGAGGAGAAAGAGGCGGGCGTCGGGAAGG
GGTTTTCACAACCCATGCTTGTGTCCCGAGGCGTCATCTCCACCACCACC
TCCACCGACTTCCTCTACCGCACCCTCCACAAACTCGCCGGGCGGGCCAA
CGAAGAACCGGACGACGCCCTCATCAAACGCCTCGTCCATGCCTTCACCC
GTGAAGTCCTTCCTGCAGGCGTGACGCTCTGGCAGCGGAATGACCCCTCC
TGCTTTGCCTGTATTGTGCAAAAAGGACTCTTAGGTGTTCCTCGCCTCAA
GGAAGATCCCTCCATCTCCGCCTCCCTCGCGCAAGACCCCGGAGGCCTCA
TTCCCGGGGCTTCCTCCCCTTCCTTCCTCCTTCCCTCCTCTTCGTCATCC
TCTACTATGACTACCGCCGGAAGGGCCCGCACGTACTCGATGCCCGACGT
GGCAGATGACGACGAGGACGACAAGCGGGAAATGCGGTACATGTACCCGT
CCTACGGCGACCTCCTCTCCATCTCAACCACCGTCGGAGGGGGTGCTGAT
GAATTTAGAGAGTATTCGTTACCGGGGCAAATGAGTGGTGAACTAGGTTT
GTTCACAAAAGGTCTTAGGAAGTATAGGATGGTCGCAGTGGTGGAGACGG
TGGTGTGGAGACTGGAGGTCGGGAGGCTGAGGCGGATGAGGGTGGAAGAC
CCACAGGCGTATATTTGTTTGCAGGGCATCGTGCTGAGCTATGCCAGCCA
TCGATTGAATTGCTTAATGCTGCAGGGGCAGTTGCATTCAGTTTAGG
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protein sequence of jgi.p|Nanoce1779_2|581981

>mRNA_3394-protein ID=mRNA_3394-protein|Name=jgi.p|Nanoce1779_2|581981|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MRSKRMHHFSKDLNKAFTFCEDAVLAALGAGDEREEEEDRQEGEIQMQEG
GQGWRSDGVADPSSSPDEEKEAGVGKGFSQPMLVSRGVISTTTSTDFLYR
TLHKLAGRANEEPDDALIKRLVHAFTREVLPAGVTLWQRNDPSCFACIVQ
KGLLGVPRLKEDPSISASLAQDPGGLIPGASSPSFLLPSSSSSSTMTTAG
RARTYSMPDVADDDEDDKREMRYMYPSYGDLLSISTTVGGGADEFREYSL
PGQMSGELGLFTKGLRKYRMVAVVETVVWRLEVGRLRRMRVEDPQAYICL
QGIVLSYASHRLNCLMLQGQLHSV*
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mRNA from alignment at scaffold_6:206666..207812-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3394 ID=mRNA_3394|Name=jgi.p|Nanoce1779_2|581981|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at scaffold_6:206666..207812- (Nannochloropsis oceanica)
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGAAGAGG
AAGAGGAAGAGGAAGTAGGGAGGGGGCTGTCCGTGTAGGTGGAGGAGGAA
GAGGAGGAGGGAAAGGTGGAGGAAGGGGGGGAGGACAAGGGCGAGGACGA
GGACGAGGCTGGTCGTCGTTGATGAGGTCGAAGCGGATGCATCATTTCTC
CAAAGACCTGAACAAGGCATTCACGTTCTGTGAGGATGCGGTGCTGGCGG
CGTTAGGGGCGGGAGATGAGCGGGAGGAGGAGGAAGACAGACAGGAGGGC
GAGATTCAAATGCAGGAGGGAGGGCAGGGATGGCGCAGCGACGGAGTGGC
CGATCCTTCCAGCAGCCCCGACGAGGAGAAAGAGGCGGGCGTCGGGAAGG
GGTTTTCACAACCCATGCTTGTGTCCCGAGGCGTCATCTCCACCACCACC
TCCACCGACTTCCTCTACCGCACCCTCCACAAACTCGCCGGGCGGGCCAA
CGAAGAACCGGACGACGCCCTCATCAAACGCCTCGTCCATGCCTTCACCC
GTGAAGTCCTTCCTGCAGGCGTGACGCTCTGGCAGCGGAATGACCCCTCC
TGCTTTGCCTGTATTGTGCAAAAAGGACTCTTAGGTGTTCCTCGCCTCAA
GGAAGATCCCTCCATCTCCGCCTCCCTCGCGCAAGACCCCGGAGGCCTCA
TTCCCGGGGCTTCCTCCCCTTCCTTCCTCCTTCCCTCCTCTTCGTCATCC
TCTACTATGACTACCGCCGGAAGGGCCCGCACGTACTCGATGCCCGACGT
GGCAGATGACGACGAGGACGACAAGCGGGAAATGCGGTACATGTACCCGT
CCTACGGCGACCTCCTCTCCATCTCAACCACCGTCGGAGGGGGTGCTGAT
GAATTTAGAGAGTATTCGTTACCGGGGCAAATGAGTGGTGAACTAGGTTT
GTTCACAAAAGGTCTTAGGAAGTATAGGATGGTCGCAGTGGTGGAGACGG
TGGTGTGGAGACTGGAGGTCGGGAGGCTGAGGCGGATGAGGGTGGAAGAC
CCACAGGCGTATATTTGTTTGCAGGGCATCGTGCTGAGCTATGCCAGCCA
TCGATTGAATTGCTTAATGCTGCAGGGGCAGTTGCATTCAGTTTAGG
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Coding sequence (CDS) from alignment at scaffold_6:206666..207812-

>mRNA_3394 ID=mRNA_3394|Name=jgi.p|Nanoce1779_2|581981|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_6:206666..207812- (Nannochloropsis oceanica)
ATGAGGTCGAAGCGGATGCATCATTTCTCCAAAGACCTGAACAAGGCATT
CACGTTCTGTGAGGATGCGGTGCTGGCGGCGTTAGGGGCGGGAGATGAGC
GGGAGGAGGAGGAAGACAGACAGGAGGGCGAGATTCAAATGCAGGAGGGA
GGGCAGGGATGGCGCAGCGACGGAGTGGCCGATCCTTCCAGCAGCCCCGA
CGAGGAGAAAGAGGCGGGCGTCGGGAAGGGGTTTTCACAACCCATGCTTG
TGTCCCGAGGCGTCATCTCCACCACCACCTCCACCGACTTCCTCTACCGC
ACCCTCCACAAACTCGCCGGGCGGGCCAACGAAGAACCGGACGACGCCCT
CATCAAACGCCTCGTCCATGCCTTCACCCGTGAAGTCCTTCCTGCAGGCG
TGACGCTCTGGCAGCGGAATGACCCCTCCTGCTTTGCCTGTATTGTGCAA
AAAGGACTCTTAGGTGTTCCTCGCCTCAAGGAAGATCCCTCCATCTCCGC
CTCCCTCGCGCAAGACCCCGGAGGCCTCATTCCCGGGGCTTCCTCCCCTT
CCTTCCTCCTTCCCTCCTCTTCGTCATCCTCTACTATGACTACCGCCGGA
AGGGCCCGCACGTACTCGATGCCCGACGTGGCAGATGACGACGAGGACGA
CAAGCGGGAAATGCGGTACATGTACCCGTCCTACGGCGACCTCCTCTCCA
TCTCAACCACCGTCGGAGGGGGTGCTGATGAATTTAGAGAGTATTCGTTA
CCGGGGCAAATGAGTGGTGAACTAGGTTTGTTCACAAAAGGTCTTAGGAA
GTATAGGATGGTCGCAGTGGTGGAGACGGTGGTGTGGAGACTGGAGGTCG
GGAGGCTGAGGCGGATGAGGGTGGAAGACCCACAGGCGTATATTTGTTTG
CAGGGCATCGTGCTGAGCTATGCCAGCCATCGATTGAATTGCTTAATGCT
GCAGGGGCAGTTGCATTCAGTTTAG
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Synonyms
Publications