jgi.p|Nanoce1779_2|581979, mRNA_3393 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581979
Unique NamemRNA_3393
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1110
Alignment locationscaffold_6:205030..206139 +

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Properties
Property NameValue
TranscriptId582065
TrackFilteredModels2
ProteinId581979
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:205030..206139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581979gene_3393Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581979mRNA_3393-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3393CDS_3393Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3393 ID=mRNA_3393|Name=jgi.p|Nanoce1779_2|581979|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ACGACAGCCAGCCCCACGCCCAATGCACGCCGTGGCCGCCGCCACAAGTC
GACGCTTACTCAGCCTTAAACCACAACCATCATCAATACCACATGTCCTT
GCGTCTGCCACCCTCATCCAGGCCCGGAGTCTTTTTGGCTTTGGCGAAAG
CATGTCAAAGGAAGCTGCGGGGCGGCGTCGCGCTGCTGTCCCTCACCGCC
CACCTATGGCACCCGGACACGTCACACCGCGCCGCACCTTGCCGGCAAAC
AGTCCTGTTATAAAACCCAATTATGCCGACACGGGCAAGCTCCCTGCTCC
TTTCCCTTCTATACTCTTGCACACCCCAGAAAGCATTGCCAAAATGCGAG
CTGCCGGCCGCCTGGCCAGGCGGATGCTAGACTACGCATGCTCACTCGTA
AGGCCCGGGATTACGACGGAAGAAATCGATGTGCAAGTACACAACGCAAT
ACTTGCTGCGGGTGCGTATCCCTCCCCATTGAACTACTGGGGCTTCCCCA
AATCAATATGTTCGTCGATTAATGAGGTGGTGATTCACGGCATTCCGGAC
GACAGACCATTGAGAGAGGGGGACATAGCAAAGTTTGACATATCCTTGTT
TTATGACGGTGTGCATGGGGATAACTGTGCCTCAGTCCCTGTGGGGGAGG
TTGATGAGGAGGGGTTACGGCTTATGGAGGCAGCGCAGAAAGCATTGGAT
AGTGGGGTGGAGGCTTGTAGCCCCGGGGCGTGTTTAAGTGGGGTGGGCGC
TGCAGTGCATGCGGTGGCGGATGAGTATGGATATGAGACTGTCCGTGCAT
ACAGTGGGCATGGGGTGGGGACAGATTTGCATATGCGTCCATTCGTGTTG
CACTATCGTAACAAGGAAAAGTTGCCATTGAGGCCTGGGATGGTGTTTAC
GATCGAGCCAATGTTGTTGGAGAAAGGCCCGGAGATTGATACATGGGAGG
ATGGATGGACGGTGGTGAGTAGAGATGGGGGTAGGGGGGCGCAGTACGAG
CATACGGTGTTGATTACGGAGGAGGGGGTGGAGGTGCTGACTGTGCCTGA
GTAGGATGGTGACGTCGAGGAAAGAGAAGACAAGAGTAGGGAAAGGAAGA
AAGATAGGAG
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protein sequence of jgi.p|Nanoce1779_2|581979

>mRNA_3393-protein ID=mRNA_3393-protein|Name=jgi.p|Nanoce1779_2|581979|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MHAVAAATSRRLLSLKPQPSSIPHVLASATLIQARSLFGFGESMSKEAAG
RRRAAVPHRPPMAPGHVTPRRTLPANSPVIKPNYADTGKLPAPFPSILLH
TPESIAKMRAAGRLARRMLDYACSLVRPGITTEEIDVQVHNAILAAGAYP
SPLNYWGFPKSICSSINEVVIHGIPDDRPLREGDIAKFDISLFYDGVHGD
NCASVPVGEVDEEGLRLMEAAQKALDSGVEACSPGACLSGVGAAVHAVAD
EYGYETVRAYSGHGVGTDLHMRPFVLHYRNKEKLPLRPGMVFTIEPMLLE
KGPEIDTWEDGWTVVSRDGGRGAQYEHTVLITEEGVEVLTVPE*
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mRNA from alignment at scaffold_6:205030..206139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3393 ID=mRNA_3393|Name=jgi.p|Nanoce1779_2|581979|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp|location=Sequence derived from alignment at scaffold_6:205030..206139+ (Nannochloropsis oceanica)
ACGACAGCCAGCCCCACGCCCAATGCACGCCGTGGCCGCCGCCACAAGTC
GACGCTTACTCAGCCTTAAACCACAACCATCATCAATACCACATGTCCTT
GCGTCTGCCACCCTCATCCAGGCCCGGAGTCTTTTTGGCTTTGGCGAAAG
CATGTCAAAGGAAGCTGCGGGGCGGCGTCGCGCTGCTGTCCCTCACCGCC
CACCTATGGCACCCGGACACGTCACACCGCGCCGCACCTTGCCGGCAAAC
AGTCCTGTTATAAAACCCAATTATGCCGACACGGGCAAGCTCCCTGCTCC
TTTCCCTTCTATACTCTTGCACACCCCAGAAAGCATTGCCAAAATGCGAG
CTGCCGGCCGCCTGGCCAGGCGGATGCTAGACTACGCATGCTCACTCGTA
AGGCCCGGGATTACGACGGAAGAAATCGATGTGCAAGTACACAACGCAAT
ACTTGCTGCGGGTGCGTATCCCTCCCCATTGAACTACTGGGGCTTCCCCA
AATCAATATGTTCGTCGATTAATGAGGTGGTGATTCACGGCATTCCGGAC
GACAGACCATTGAGAGAGGGGGACATAGCAAAGTTTGACATATCCTTGTT
TTATGACGGTGTGCATGGGGATAACTGTGCCTCAGTCCCTGTGGGGGAGG
TTGATGAGGAGGGGTTACGGCTTATGGAGGCAGCGCAGAAAGCATTGGAT
AGTGGGGTGGAGGCTTGTAGCCCCGGGGCGTGTTTAAGTGGGGTGGGCGC
TGCAGTGCATGCGGTGGCGGATGAGTATGGATATGAGACTGTCCGTGCAT
ACAGTGGGCATGGGGTGGGGACAGATTTGCATATGCGTCCATTCGTGTTG
CACTATCGTAACAAGGAAAAGTTGCCATTGAGGCCTGGGATGGTGTTTAC
GATCGAGCCAATGTTGTTGGAGAAAGGCCCGGAGATTGATACATGGGAGG
ATGGATGGACGGTGGTGAGTAGAGATGGGGGTAGGGGGGCGCAGTACGAG
CATACGGTGTTGATTACGGAGGAGGGGGTGGAGGTGCTGACTGTGCCTGA
GTAGGATGGTGACGTCGAGGAAAGAGAAGACAAGAGTAGGGAAAGGAAGA
AAGATAGGAG
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Coding sequence (CDS) from alignment at scaffold_6:205030..206139+

>mRNA_3393 ID=mRNA_3393|Name=jgi.p|Nanoce1779_2|581979|organism=Nannochloropsis oceanica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_6:205030..206139+ (Nannochloropsis oceanica)
ATGCACGCCGTGGCCGCCGCCACAAGTCGACGCTTACTCAGCCTTAAACC
ACAACCATCATCAATACCACATGTCCTTGCGTCTGCCACCCTCATCCAGG
CCCGGAGTCTTTTTGGCTTTGGCGAAAGCATGTCAAAGGAAGCTGCGGGG
CGGCGTCGCGCTGCTGTCCCTCACCGCCCACCTATGGCACCCGGACACGT
CACACCGCGCCGCACCTTGCCGGCAAACAGTCCTGTTATAAAACCCAATT
ATGCCGACACGGGCAAGCTCCCTGCTCCTTTCCCTTCTATACTCTTGCAC
ACCCCAGAAAGCATTGCCAAAATGCGAGCTGCCGGCCGCCTGGCCAGGCG
GATGCTAGACTACGCATGCTCACTCGTAAGGCCCGGGATTACGACGGAAG
AAATCGATGTGCAAGTACACAACGCAATACTTGCTGCGGGTGCGTATCCC
TCCCCATTGAACTACTGGGGCTTCCCCAAATCAATATGTTCGTCGATTAA
TGAGGTGGTGATTCACGGCATTCCGGACGACAGACCATTGAGAGAGGGGG
ACATAGCAAAGTTTGACATATCCTTGTTTTATGACGGTGTGCATGGGGAT
AACTGTGCCTCAGTCCCTGTGGGGGAGGTTGATGAGGAGGGGTTACGGCT
TATGGAGGCAGCGCAGAAAGCATTGGATAGTGGGGTGGAGGCTTGTAGCC
CCGGGGCGTGTTTAAGTGGGGTGGGCGCTGCAGTGCATGCGGTGGCGGAT
GAGTATGGATATGAGACTGTCCGTGCATACAGTGGGCATGGGGTGGGGAC
AGATTTGCATATGCGTCCATTCGTGTTGCACTATCGTAACAAGGAAAAGT
TGCCATTGAGGCCTGGGATGGTGTTTACGATCGAGCCAATGTTGTTGGAG
AAAGGCCCGGAGATTGATACATGGGAGGATGGATGGACGGTGGTGAGTAG
AGATGGGGGTAGGGGGGCGCAGTACGAGCATACGGTGTTGATTACGGAGG
AGGGGGTGGAGGTGCTGACTGTGCCTGAGTAG
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Synonyms
Publications