jgi.p|Nanoce1779_2|581975, mRNA_3392 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581975
Unique Name	mRNA_3392
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	995
Alignment location	scaffold_6:202966..204737 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	582061
Track	FilteredModels2
ProteinId	581975

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:202966..204737 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581975	gene_3392	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581975	mRNA_3392-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3392	CDS_3392	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:202966..204737+
coding sequence from alignment at scaffold_6:202966..204737+

mRNA sequence

>mRNA_3392 ID=mRNA_3392|Name=jgi.p|Nanoce1779_2|581975|organism=Nannochloropsis oceanica|type=mRNA|length=995bp
AGCACAGGCATAATATATCCAGAACAAGTACACGGCCTGGAGGGATGAGT
CGTCCTGAGCGGCAAAACACGCCGCAAAATTACTACAATCCAAAGGAGGC
GGCGAAGTACAACAGCTCCTCGCGGATCATTGGCATCCAGAGTGAAATCA
CGGCCCGGGCTATTGAGCTTTTAGCTCTTGAGCCAGGAAAGCGTACCCTT
CTCCTCGACATTGGCTGCGGCAGTGGCTTGAGTGGCGAGGCTATCGAAGA
GGCAGGGCATGCATGGATTGGATGTGATATTTCCAAGGACATGCTGGCCT
TGGCGGCGGAGAAGGAGACCGACGGCGGCGACGTCTTCCAACGCGACATG
GGCCAAGGCCTGCCATTTCGAGCCGGCTGCTTCGATGGCGCCATCTCCAT
CTCGGCGCTGCAGTGGTTGTGCTACGAGGATAACAAGGCCCATTCGGCCA
AAGCGCGTCTGATGCGATTCTTTTCATCGCTTTACACGGTTTTGCGGAGG
GGGGCAAGGGCTGCGTTGCAGTTCTACCCAGAAAACTCTGCGCAAGTTTT
GCTCATTACCGAGGCCGCCACCCGCGTCGGGTTCCAAGGCGGGCTCGTCG
TCGACTATCCCAACAGTAGTAAAGCGAAGAAGTACTATTTGTGTCTCTCC
TTTGAGCATACGTATCGCGTGCCACGTGCGTTGACGCAGGAAGGAGGCGG
AGGGCGGGCAATGACAAGTGTGGGGGTTACTGAGCGAGAGAGGGCGAAAC
AGCGGGGGAGGAAAGGAAAGAAGGGAGGAAAGCGGGAGGCTGTCAAGAGC
AGGGATTGGGTGTTGGCGAAGAAGGAAAAGCAACGCTCAAGGGGCTTGAA
TGTGCGGGAGGATAGCAAGTACACGGCACGAAAGCGAAAGGACAAGCTCT
AGGAGTTTAATGAGGGAGGGGGGAGGTCAAGACTTGTACAGGAAAAAAAA
AAGAGGGGGAGAAACGGAAAGAAATAAGCCCAATCTCATGAATAT

protein sequence of jgi.p|Nanoce1779_2|581975

>mRNA_3392-protein ID=mRNA_3392-protein|Name=jgi.p|Nanoce1779_2|581975|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MSRPERQNTPQNYYNPKEAAKYNSSSRIIGIQSEITARAIELLALEPGKR
TLLLDIGCGSGLSGEAIEEAGHAWIGCDISKDMLALAAEKETDGGDVFQR
DMGQGLPFRAGCFDGAISISALQWLCYEDNKAHSAKARLMRFFSSLYTVL
RRGARAALQFYPENSAQVLLITEAATRVGFQGGLVVDYPNSSKAKKYYLC
LSFEHTYRVPRALTQEGGGGRAMTSVGVTERERAKQRGRKGKKGGKREAV
KSRDWVLAKKEKQRSRGLNVREDSKYTARKRKDKL*

mRNA from alignment at scaffold_6:202966..204737+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3392 ID=mRNA_3392|Name=jgi.p|Nanoce1779_2|581975|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_6:202966..204737+ (Nannochloropsis oceanica)
AGCACAGGCATAATATATCCAGAACAAGTACACGGCCTGGAGGGATGAGT
CGTCCTGAGCGGCAAAACACGCCGCAAAATTACTACAATCCAAAGGTACG
GAGATGTGGTGTGGGGAGGTCGCCTCGTGTCGTGTGGGTGGGCCGGTGGT
GTCCTGGAAACGAGCCATGTTCACGTAGGAGGTGAGGGGCGTGTGCCATG
GTGAGATGTATAGGGTAATACAATGGGAATGTAGTCCCCGCGACAGGAGG
CGGCGTCCGGAACATGCGGATGGTCATGGCCAAGAACGATAGCCTCCCCC
ACTCCGCCGACCCCTCGACACTCGAAAGTCCCACCAACCCACACAACGTT
CTTCATCTCCTTAGCACTGACTGTCACATCGTTTATAAACTCTCATGCAT
TCATTGAGCCAATCCTTTCAAAGCCCATCATCCTCAATACCACCACCACT
TCCACCATACCTCACAGGAGGCGGCGAAGTACAACAGCTCCTCGCGGATC
ATTGGCATCCAGAGTGAAATCACGGCCCGGGCTATTGAGCTTTTAGCTCT
TGAGGTCAGTGTTGCTGTGACATGAATAAGATGCACATATTATTATCCTA
TACCTTCCGTGGGGCGCCTCTATTCTTATTCTTTCCCCCCTCTCTTCCCC
CTCCCCCTCCCCTTTTCAGCCAGGAAAGCGTACCCTTCTCCTCGACATTG
GCTGCGGCAGTGGCTTGAGTGGCGAGGCTATCGAAGAGGCAGGGCATGCA
TGGATTGGATGTGATATTTCCAAGGACATGCTGGCCTTGGCGGCGGAGAA
GGAGACCGACGGCGGGTGGGTTAGGGGGGCAGGGAGGGAGAGGGAGACAT
TCTTGACCTGAGATAAAATGTTGACGTGACGACACGACGACATGCGAAAT
CGAGCAACTTGTTCATCTCATGCTATTTCGTCCTCCATCCTCTCCTCTAT
AAGCGACGTCTTCCAACGCGACATGGGCCAAGGCCTGCCATTTCGAGCCG
GCTGCTTCGATGGCGCCATCTCCATCTCGGCGCTGCAGTGGTTGTGCTAC
GAGGATAACAAGGCCCATTCGGCCAAAGCGCGTCTGATGCGATTCTTTTC
ATCGCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCTGCGTTGCAGTTCT
ACCCAGGTAGGGTTTAGCATTTCCTCCCTCCCTCCCTCTCTCCCTCCCTT
CGTTTTATTTTTAATGGATACTTGATATCATGCCCCTCTGTGCCGCATTC
CTTCGTTTTTTCCCAATCAAACATTGTCCTTCCCTTGCCTTCGATTAACC
TCTCTCAGAAAACTCTGCGCAAGTTTTGCTCATTACCGAGGCCGCCACCC
GCGTCGGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCAACAGTAGTAAA
GCGAAGAAGTACTATTTGTGTCTCTCCTTTGAGCATACGTATCGCGTGCC
ACGTGCGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAATGACAAGTGTGG
GGGTTACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGAAAGGAAAGAAG
GGAGGAAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTGTTGGCGAAGAA
GGAAAAGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGATAGCAAGTACA
CGGCACGAAAGCGAAAGGACAAGCTCTAGGAGTTTAATGAGGGAGGGGGG
AGGTCAAGACTTGTACAGGAAAAAAAAAAGAGGGGGAGAAACGGAAAGAA
ATAAGCCCAATCTCATGAATAT

Coding sequence (CDS) from alignment at scaffold_6:202966..204737+

>mRNA_3392 ID=mRNA_3392|Name=jgi.p|Nanoce1779_2|581975|organism=Nannochloropsis oceanica|type=CDS|length=4290bp|location=Sequence derived from alignment at scaffold_6:202966..204737+ (Nannochloropsis oceanica)
ATGAGTCGTCCTGAGCGGCAAAACACGCCGCAAAATTACTACAATCCAAA
GGAGGCGGCGAAGTACAACAGCTCCTCGCGGATCATTGGCATCCAGAGTG
AAATCACGGCCCGGGCTATTGAGCTTTTAGCTCTTGAGCCAGGAAAGCGT
ACCCTTCTCCTCGACATTGGCTGCGGCAGTGGCTTGAGTGGCGAGGCTAT
CGAAGAGGCAGGGCATGCATGGATTGGATGTGATATTTCCAAGGACATGC
TGGCCTTGGCGGCGGAGAAGGAGACCGACGGCGGCGACGTCTTCCAACGC
GACATGGGCCAAGGCCTGCCATTTCGAGCCGGCTGCTTCGATGGCGCCAT
CTCCATCTCGGCGCTGCAGTGGTTGTGCTACGAGGATAACAAGGCCCATT
CGGCCAAAGCGCGTCTGATGCGATTCTTTTCATCGCTTTACACGGTTTTG
CGGAGGGGGGCAAGGGCTGCGTTGCAGTTCTACCCAGAAAACTCTGCGCA
AGTTTTGCTCATTACCGAGGCCGCCACCCGCGTCGGGTTCCAAGGCGGGC
TCGTCGTCGACTATCCCAACAGTAGTAAAGCGAAGAAGTACTATTTGTGT
CTCTCCTTTGAGCATACGTATCGCGTGCCACGTGCGTTGACGCAGGAAGG
AGGCGGAGGGCGGGCAATGACAAGTGTGGGGGTTACTGAGCGAGAGAGGG
CGAAACAGCGGGGGAGGAAAGGAAAGAAGGGAGGAAAGCGGGAGGCTGTC
AAGAGCAGGGATTGGGTGTTGGCGAAGAAGGAAAAGCAACGCTCAAGGGG
CTTGAATGTGCGGGAGGATAGCAAGTACACGGCACGAAAGCGAAAGGACA
AGCTCTAGATGAGTCGTCCTGAGCGGCAAAACACGCCGCAAAATTACTAC
AATCCAAAGGAGGCGGCGAAGTACAACAGCTCCTCGCGGATCATTGGCAT
CCAGAGTGAAATCACGGCCCGGGCTATTGAGCTTTTAGCTCTTGAGCCAG
GAAAGCGTACCCTTCTCCTCGACATTGGCTGCGGCAGTGGCTTGAGTGGC
GAGGCTATCGAAGAGGCAGGGCATGCATGGATTGGATGTGATATTTCCAA
GGACATGCTGGCCTTGGCGGCGGAGAAGGAGACCGACGGCGGCGACGTCT
TCCAACGCGACATGGGCCAAGGCCTGCCATTTCGAGCCGGCTGCTTCGAT
GGCGCCATCTCCATCTCGGCGCTGCAGTGGTTGTGCTACGAGGATAACAA
GGCCCATTCGGCCAAAGCGCGTCTGATGCGATTCTTTTCATCGCTTTACA
CGGTTTTGCGGAGGGGGGCAAGGGCTGCGTTGCAGTTCTACCCAGAAAAC
TCTGCGCAAGTTTTGCTCATTACCGAGGCCGCCACCCGCGTCGGGTTCCA
AGGCGGGCTCGTCGTCGACTATCCCAACAGTAGTAAAGCGAAGAAGTACT
ATTTGTGTCTCTCCTTTGAGCATACGTATCGCGTGCCACGTGCGTTGACG
CAGGAAGGAGGCGGAGGGCGGGCAATGACAAGTGTGGGGGTTACTGAGCG
AGAGAGGGCGAAACAGCGGGGGAGGAAAGGAAAGAAGGGAGGAAAGCGGG
AGGCTGTCAAGAGCAGGGATTGGGTGTTGGCGAAGAAGGAAAAGCAACGC
TCAAGGGGCTTGAATGTGCGGGAGGATAGCAAGTACACGGCACGAAAGCG
AAAGGACAAGCTCTAGATGAGTCGTCCTGAGCGGCAAAACACGCCGCAAA
ATTACTACAATCCAAAGGAGGCGGCGAAGTACAACAGCTCCTCGCGGATC
ATTGGCATCCAGAGTGAAATCACGGCCCGGGCTATTGAGCTTTTAGCTCT
TGAGCCAGGAAAGCGTACCCTTCTCCTCGACATTGGCTGCGGCAGTGGCT
TGAGTGGCGAGGCTATCGAAGAGGCAGGGCATGCATGGATTGGATGTGAT
ATTTCCAAGGACATGCTGGCCTTGGCGGCGGAGAAGGAGACCGACGGCGG
CGACGTCTTCCAACGCGACATGGGCCAAGGCCTGCCATTTCGAGCCGGCT
GCTTCGATGGCGCCATCTCCATCTCGGCGCTGCAGTGGTTGTGCTACGAG
GATAACAAGGCCCATTCGGCCAAAGCGCGTCTGATGCGATTCTTTTCATC
GCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCTGCGTTGCAGTTCTACC
CAGAAAACTCTGCGCAAGTTTTGCTCATTACCGAGGCCGCCACCCGCGTC
GGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCAACAGTAGTAAAGCGAA
GAAGTACTATTTGTGTCTCTCCTTTGAGCATACGTATCGCGTGCCACGTG
CGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAATGACAAGTGTGGGGGTT
ACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGAAAGGAAAGAAGGGAGG
AAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTGTTGGCGAAGAAGGAAA
AGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGATAGCAAGTACACGGCA
CGAAAGCGAAAGGACAAGCTCTAGATGAGTCGTCCTGAGCGGCAAAACAC
GCCGCAAAATTACTACAATCCAAAGGAGGCGGCGAAGTACAACAGCTCCT
CGCGGATCATTGGCATCCAGAGTGAAATCACGGCCCGGGCTATTGAGCTT
TTAGCTCTTGAGCCAGGAAAGCGTACCCTTCTCCTCGACATTGGCTGCGG
CAGTGGCTTGAGTGGCGAGGCTATCGAAGAGGCAGGGCATGCATGGATTG
GATGTGATATTTCCAAGGACATGCTGGCCTTGGCGGCGGAGAAGGAGACC
GACGGCGGCGACGTCTTCCAACGCGACATGGGCCAAGGCCTGCCATTTCG
AGCCGGCTGCTTCGATGGCGCCATCTCCATCTCGGCGCTGCAGTGGTTGT
GCTACGAGGATAACAAGGCCCATTCGGCCAAAGCGCGTCTGATGCGATTC
TTTTCATCGCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCTGCGTTGCA
GTTCTACCCAGAAAACTCTGCGCAAGTTTTGCTCATTACCGAGGCCGCCA
CCCGCGTCGGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCAACAGTAGT
AAAGCGAAGAAGTACTATTTGTGTCTCTCCTTTGAGCATACGTATCGCGT
GCCACGTGCGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAATGACAAGTG
TGGGGGTTACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGAAAGGAAAG
AAGGGAGGAAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTGTTGGCGAA
GAAGGAAAAGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGATAGCAAGT
ACACGGCACGAAAGCGAAAGGACAAGCTCTAGATGAGTCGTCCTGAGCGG
CAAAACACGCCGCAAAATTACTACAATCCAAAGGAGGCGGCGAAGTACAA
CAGCTCCTCGCGGATCATTGGCATCCAGAGTGAAATCACGGCCCGGGCTA
TTGAGCTTTTAGCTCTTGAGCCAGGAAAGCGTACCCTTCTCCTCGACATT
GGCTGCGGCAGTGGCTTGAGTGGCGAGGCTATCGAAGAGGCAGGGCATGC
ATGGATTGGATGTGATATTTCCAAGGACATGCTGGCCTTGGCGGCGGAGA
AGGAGACCGACGGCGGCGACGTCTTCCAACGCGACATGGGCCAAGGCCTG
CCATTTCGAGCCGGCTGCTTCGATGGCGCCATCTCCATCTCGGCGCTGCA
GTGGTTGTGCTACGAGGATAACAAGGCCCATTCGGCCAAAGCGCGTCTGA
TGCGATTCTTTTCATCGCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCT
GCGTTGCAGTTCTACCCAGAAAACTCTGCGCAAGTTTTGCTCATTACCGA
GGCCGCCACCCGCGTCGGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCA
ACAGTAGTAAAGCGAAGAAGTACTATTTGTGTCTCTCCTTTGAGCATACG
TATCGCGTGCCACGTGCGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAAT
GACAAGTGTGGGGGTTACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGA
AAGGAAAGAAGGGAGGAAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTG
TTGGCGAAGAAGGAAAAGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGA
TAGCAAGTACACGGCACGAAAGCGAAAGGACAAGCTCTAG

Synonyms

Publications