jgi.p|Nanoce1779_2|237317, mRNA_339 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|237317
Unique NamemRNA_339
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length850
Alignment locationscaffold_3:832922..833771 +

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Properties
Property NameValue
TranscriptId237403
TrackFilteredModels2
ProteinId237317
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:832922..833771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|237317gene_339Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|237317mRNA_339-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_339CDS_339Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_339 ID=mRNA_339|Name=jgi.p|Nanoce1779_2|237317|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
AATGAAGGAACGTGGGAGAGGTGTAAGGGTACGTATGAAGGTCTGCTCTG
TGTGTATTTTTTAAAATCCCTCACGGCCCTCTTTCTTTCCTTTCATTCCA
ACCAATACAGGCGTGAGCATTCAACAGCTGGAAAAAGAGCGTGCAGTCAT
TATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGATGG
GTGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAGCCT
TTTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACCGCG
GCATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCCTTT
CGGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTTAAA
CCTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAGAAA
CAATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTAAGA
CTAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGGAGC
GTTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCTTGC
TTCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCCCAC
GCCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTGTCA
GTGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGCTAA
CGGACAAAGCCGAGCAGTTTAGCGACCTTTTTGTGAATAGAAGACAATTG
AAATATACACATAGTATATAAGCAAAGTAGGCAACAAACGTATGGGCATG
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protein sequence of jgi.p|Nanoce1779_2|237317

>mRNA_339-protein ID=mRNA_339-protein|Name=jgi.p|Nanoce1779_2|237317|organism=Nannochloropsis oceanica|type=polypeptide|length=207bp
MDLIVLCPLLFPSDGMGGNKNGNKNKTHPPLKPFHAPRVIKSAPASRTPR
HFFPLTDEVTRKTAPLSATGGGDDDRDVPVFLKPPLKPLKRLHEGTGSRN
NSTTHAATTTINSHPKTSDCTGSESNSSVDDRSVCSALPRVAEARPNPLA
STLPFRPPDKPERTSPRRASWNESSAFSLLALSVSSCSLSAEGNGETVAN
GQSRAV*
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mRNA from alignment at scaffold_3:832922..833771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_339 ID=mRNA_339|Name=jgi.p|Nanoce1779_2|237317|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at scaffold_3:832922..833771+ (Nannochloropsis oceanica)
AATGAAGGAACGTGGGAGAGGTGTAAGGGTACGTATGAAGGTCTGCTCTG
TGTGTATTTTTTAAAATCCCTCACGGCCCTCTTTCTTTCCTTTCATTCCA
ACCAATACAGGCGTGAGCATTCAACAGCTGGAAAAAGAGCGTGCAGTCAT
TATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGATGG
GTGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAGCCT
TTTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACCGCG
GCATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCCTTT
CGGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTTAAA
CCTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAGAAA
CAATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTAAGA
CTAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGGAGC
GTTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCTTGC
TTCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCCCAC
GCCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTGTCA
GTGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGCTAA
CGGACAAAGCCGAGCAGTTTAGCGACCTTTTTGTGAATAGAAGACAATTG
AAATATACACATAGTATATAAGCAAAGTAGGCAACAAACGTATGGGCATG
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Coding sequence (CDS) from alignment at scaffold_3:832922..833771+

>mRNA_339 ID=mRNA_339|Name=jgi.p|Nanoce1779_2|237317|organism=Nannochloropsis oceanica|type=CDS|length=621bp|location=Sequence derived from alignment at scaffold_3:832922..833771+ (Nannochloropsis oceanica)
ATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGATGGG
TGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAGCCTT
TTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACCGCGG
CATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCCTTTC
GGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTTAAAC
CTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAGAAAC
AATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTAAGAC
TAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGGAGCG
TTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCTTGCT
TCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCCCACG
CCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTGTCAG
TGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGCTAAC
GGACAAAGCCGAGCAGTTTAG
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Synonyms
Publications