jgi.p|Nanoce1779_2|581960, mRNA_3387 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581960
Unique NamemRNA_3387
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length583
Alignment locationscaffold_6:190920..191502 -

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Properties
Property NameValue
TranscriptId582046
TrackFilteredModels2
ProteinId581960
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:190920..191502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581960gene_3387Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581960mRNA_3387-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3387CDS_3387Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Nanoce1779_2|581960|organism=Nannochloropsis oceanica|type=mRNA|length=583bp
CCCGAGTAACCTCCGAGGTTCCCCTAACCATGCTCCCCCATCTATTGCCA
GAGGTCCTCTTTCCCTCCTTCCCTCCCTCTTTCTACTTTTCACTCTCTCA
CTCTGGCCCTCTCGCTCTCTCGATTATACGTGTGTGTAAAGCAAAAGCAC
TCTTACCTCCACATCTCTTTTACATTCTTCTTCGCGCCTGCCGTCGACAC
ACACACCTTTCCTGTCTCCTTGGCCTTGCTTGCAGCGGTTGCACCAATGC
TGCTGCTGCTGGTGCTCCTGCTGCTCCTGCTCCTCGTCCTCCTGCGGGTA
GGGGTGCTGCCAGCTGCCACACCCCTCCATCCCCCTGCCACTCCTGCTGC
TCCCCCATCCGCCTTAATTTGCGTCCGAGCCATCTTCTTCTCGCTTCTGC
TGTCCTGAACGCCGCAACTGCTGACCGTTTCCATCACGGGAGGGGCAGGA
GGAGAAGGAGGAGGAGGAGAAAGGAGGGGACTGGTGGTTGAAGGCAACGC
AGGCAGCTTGTGCGAGAGCCAAAATCCCTTCTCTTTCAAGTGGCGCCGGC
GAATTTCCGCGGAGGAGGAAGGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|581960

>mRNA_3387-protein ID=mRNA_3387-protein|Name=jgi.p|Nanoce1779_2|581960|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MLPHLLPEVLFPSFPPSFYFSLSHSGPLALSIIRVCKAKALLPPHLFYIL
LRACRRHTHLSCLLGLACSGCTNAAAAGAPAAPAPRPPAGRGAASCHTPP
SPCHSCCSPIRLNLRPSHLLLASAVLNAATADRFHHGRGRRRRRRRRKEG
TGG*
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mRNA from alignment at scaffold_6:190920..191502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Nanoce1779_2|581960|organism=Nannochloropsis oceanica|type=mRNA|length=583bp|location=Sequence derived from alignment at scaffold_6:190920..191502- (Nannochloropsis oceanica)
CCCGAGTAACCTCCGAGGTTCCCCTAACCATGCTCCCCCATCTATTGCCA
GAGGTCCTCTTTCCCTCCTTCCCTCCCTCTTTCTACTTTTCACTCTCTCA
CTCTGGCCCTCTCGCTCTCTCGATTATACGTGTGTGTAAAGCAAAAGCAC
TCTTACCTCCACATCTCTTTTACATTCTTCTTCGCGCCTGCCGTCGACAC
ACACACCTTTCCTGTCTCCTTGGCCTTGCTTGCAGCGGTTGCACCAATGC
TGCTGCTGCTGGTGCTCCTGCTGCTCCTGCTCCTCGTCCTCCTGCGGGTA
GGGGTGCTGCCAGCTGCCACACCCCTCCATCCCCCTGCCACTCCTGCTGC
TCCCCCATCCGCCTTAATTTGCGTCCGAGCCATCTTCTTCTCGCTTCTGC
TGTCCTGAACGCCGCAACTGCTGACCGTTTCCATCACGGGAGGGGCAGGA
GGAGAAGGAGGAGGAGGAGAAAGGAGGGGACTGGTGGTTGAAGGCAACGC
AGGCAGCTTGTGCGAGAGCCAAAATCCCTTCTCTTTCAAGTGGCGCCGGC
GAATTTCCGCGGAGGAGGAAGGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:190920..191502-

>mRNA_3387 ID=mRNA_3387|Name=jgi.p|Nanoce1779_2|581960|organism=Nannochloropsis oceanica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_6:190920..191502- (Nannochloropsis oceanica)
ATGCTCCCCCATCTATTGCCAGAGGTCCTCTTTCCCTCCTTCCCTCCCTC
TTTCTACTTTTCACTCTCTCACTCTGGCCCTCTCGCTCTCTCGATTATAC
GTGTGTGTAAAGCAAAAGCACTCTTACCTCCACATCTCTTTTACATTCTT
CTTCGCGCCTGCCGTCGACACACACACCTTTCCTGTCTCCTTGGCCTTGC
TTGCAGCGGTTGCACCAATGCTGCTGCTGCTGGTGCTCCTGCTGCTCCTG
CTCCTCGTCCTCCTGCGGGTAGGGGTGCTGCCAGCTGCCACACCCCTCCA
TCCCCCTGCCACTCCTGCTGCTCCCCCATCCGCCTTAATTTGCGTCCGAG
CCATCTTCTTCTCGCTTCTGCTGTCCTGAACGCCGCAACTGCTGACCGTT
TCCATCACGGGAGGGGCAGGAGGAGAAGGAGGAGGAGGAGAAAGGAGGGG
ACTGGTGGTTGA
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Synonyms
Publications