jgi.p|Nanoce1779_2|581958, mRNA_3386 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581958
Unique NamemRNA_3386
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length678
Alignment locationscaffold_6:189644..190321 -

Link to JBrowse

Properties
Property NameValue
TranscriptId582044
TrackFilteredModels2
ProteinId581958
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:189644..190321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581958gene_3386Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581958mRNA_3386-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3386CDS_3386Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3386 ID=mRNA_3386|Name=jgi.p|Nanoce1779_2|581958|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
TCCTCCTTCCTCCCCTCCCTCCCTCGCTCCTTCCTCCTCCACAGCCATTA
CGGCCCTTTCCAATATCGCCAACCATCCCTCCCCTTCCTCCTCCTCCTCT
CCTCCTACCCCAACCCCTAGCACCTCGCTTAAAAATATCTTGCCCTCCTC
CACCCTCCACTCCCTCCATGCCTGCATCCCTTCTCCTCCTCCTTGCTGCT
GCAGCTGTTTCTTGTCCCTCGCCCACGCCTGAATCAACAACTCTTTTTCC
TTGGTGGACGTCAAGGAAGGGGAACGAAAGCGCGTCAGGAACTCCTCGTG
GCTCTCTCCCTGGAACGACGAGGAGGTGGGAAGGGAGGAAAATGCATGCT
CTCCTCGTTGGCAGAGGTGAAGAGATGCTGCTTCTAGATGGGGATGGGAC
AACAATTCTTTTGCTCGAGTGCAGGCGCGCCGATACTTTTCTTCCTCCCC
TATCGAACGTGAGAGGGCCTCTGCCCGGGTTTCGATCTTTTGCGAAGAGC
CCTGCCATTGGTCTCTCATGGCAGCTACAGATTGATGTGGACCACGACTA
CGTTGAATCTCTAGAACGACTGGACTGGCGCTGGTGCTAGGAGGAAGGAC
GGGGGAGGAGGAAGGGGAGGAGGGAGGGAGGGAGGACGAAGGGGAGGAGG
GAGGGAGGGAGGACGAAGAGGGGAAGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|581958

>mRNA_3386-protein ID=mRNA_3386-protein|Name=jgi.p|Nanoce1779_2|581958|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MPASLLLLLAAAAVSCPSPTPESTTLFPWWTSRKGNESASGTPRGSLPGT
TRRWEGRKMHALLVGRGEEMLLLDGDGTTILLLECRRADTFLPPLSNVRG
PLPGFRSFAKSPAIGLSWQLQIDVDHDYVESLERLDWRWC*
back to top

mRNA from alignment at scaffold_6:189644..190321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3386 ID=mRNA_3386|Name=jgi.p|Nanoce1779_2|581958|organism=Nannochloropsis oceanica|type=mRNA|length=678bp|location=Sequence derived from alignment at scaffold_6:189644..190321- (Nannochloropsis oceanica)
TCCTCCTTCCTCCCCTCCCTCCCTCGCTCCTTCCTCCTCCACAGCCATTA
CGGCCCTTTCCAATATCGCCAACCATCCCTCCCCTTCCTCCTCCTCCTCT
CCTCCTACCCCAACCCCTAGCACCTCGCTTAAAAATATCTTGCCCTCCTC
CACCCTCCACTCCCTCCATGCCTGCATCCCTTCTCCTCCTCCTTGCTGCT
GCAGCTGTTTCTTGTCCCTCGCCCACGCCTGAATCAACAACTCTTTTTCC
TTGGTGGACGTCAAGGAAGGGGAACGAAAGCGCGTCAGGAACTCCTCGTG
GCTCTCTCCCTGGAACGACGAGGAGGTGGGAAGGGAGGAAAATGCATGCT
CTCCTCGTTGGCAGAGGTGAAGAGATGCTGCTTCTAGATGGGGATGGGAC
AACAATTCTTTTGCTCGAGTGCAGGCGCGCCGATACTTTTCTTCCTCCCC
TATCGAACGTGAGAGGGCCTCTGCCCGGGTTTCGATCTTTTGCGAAGAGC
CCTGCCATTGGTCTCTCATGGCAGCTACAGATTGATGTGGACCACGACTA
CGTTGAATCTCTAGAACGACTGGACTGGCGCTGGTGCTAGGAGGAAGGAC
GGGGGAGGAGGAAGGGGAGGAGGGAGGGAGGGAGGACGAAGGGGAGGAGG
GAGGGAGGGAGGACGAAGAGGGGAAGGG
back to top

Coding sequence (CDS) from alignment at scaffold_6:189644..190321-

>mRNA_3386 ID=mRNA_3386|Name=jgi.p|Nanoce1779_2|581958|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_6:189644..190321- (Nannochloropsis oceanica)
ATGCCTGCATCCCTTCTCCTCCTCCTTGCTGCTGCAGCTGTTTCTTGTCC
CTCGCCCACGCCTGAATCAACAACTCTTTTTCCTTGGTGGACGTCAAGGA
AGGGGAACGAAAGCGCGTCAGGAACTCCTCGTGGCTCTCTCCCTGGAACG
ACGAGGAGGTGGGAAGGGAGGAAAATGCATGCTCTCCTCGTTGGCAGAGG
TGAAGAGATGCTGCTTCTAGATGGGGATGGGACAACAATTCTTTTGCTCG
AGTGCAGGCGCGCCGATACTTTTCTTCCTCCCCTATCGAACGTGAGAGGG
CCTCTGCCCGGGTTTCGATCTTTTGCGAAGAGCCCTGCCATTGGTCTCTC
ATGGCAGCTACAGATTGATGTGGACCACGACTACGTTGAATCTCTAGAAC
GACTGGACTGGCGCTGGTGCTAG
back to top
Synonyms
Publications