Properties
| Property Name | Value |
|---|
| TranscriptId | 663005 |
| Track | FilteredModels2 |
| ProteinId | 662919 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:186965..189298 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3385 ID=mRNA_3385|Name=jgi.p|Nanoce1779_2|662919|organism=Nannochloropsis oceanica|type=mRNA|length=1841bp
CGTACATGGCCCGTGATACCTCGATTCCTGTCACGCTCCGCCTGGATTGA
AACAGGTGGCTTCATGTCCGGTTTCGTGATGCGGTGGCGCTACTACTGCT
TGTGATTGTCGTAGGGTCACAGTGTAGTATCGGTAGCTGCGCTAATGCCC
CTATGGCCCCCGGATCTCCGATTATGGTTATGAGGAGGAGGTCATGGTGG
TTGTTCCGTCCTGTGAATGTGTGGAACGAATATGAGTGTAATCAAAATTA
GATGGGTGCGTTGTTTGAAAGGATGCCACAAATAAATTTTGTTTTGGCAT
CGTATTGCCACGTTTGCGGATAGCATGTGGGAGCACGGAGGGCCTTGAGC
ATTGAAAGTAAAAGCGACCGACCATCAGGAATGATAAAACAATCATTGAG
AAGCCAACCGCTGGTAGCAGCTCGCTTTTCCAAAATTATGACGTGTCCTT
TTTTCCTAAGCGCCCATAGACATACCATCCACAGCGCAGGCAAGGAAACA
AACAAAGCCGTGCGGGGATGCTGCGGGCTCTGGATCCCGTCCAGGGTCAT
ATGGAGAGCCTGAGTATGCACATGCAGCATGGCGTGGACCCAGCCAGCCC
GCCCCCCGCCTGCTACCACTGCCTATGGGGGCACATTCTCCCCGGTGCCT
ACCTCCTCTTTCGATCCTTCCTCCTGATCCTCGAGGCCATCTCCCTACGT
CAACCCAAGCGCTTTTCTCCACGGACCCTCGGTCGACTCCGCGCGTACAG
CAGCTTGATAGCCGGCCCGTTCCTGGCAATGGGGGAAGGAATCACGCACA
AGGCCTGGCATGCAGGGAACTTGCAACATTTTTCGATCTACCTGTTGATT
TTCATGGATGGCCTCGTGGCGTGGATGTGCTTGGTGGGAGGGAGGGCGGG
AGGGAGGAAGGGGGAGAGGAGGTTATGGCCCATGAGTCTGCTGGGGGTGT
GGGAGGGGGGAATGCTGGGGTGCGTCGGATGGGAAATGGTGAGTCATTTT
CACGGGGGGGCGTTGATCACCCAGATGCACGCCATGATGTTCCCCTTGCT
GTCTCTGGCAGCCACAGTGCTGGTGGTGGAGAGGGTGGTGATGAGGGGGG
AAAGGGAGGGACTACGGTTGGCAGGGGCTGTGGCGATGGCGTGGGTTGGG
TGTTGGTTTTCGTTGATTGGACCAGGTTTTTGGTGGGAGGGAGGGAGGGA
AGGGTGGCTGGGGAAGGCGTATGATGAGGTGAGGGAGGGAGGGGAGAAGG
GGGTGATGGAGGGGCATGAGGTGCTCATGTGGTCGGCGACATTGTTGACT
TTTGTATTTGTGGTGGCCTTTCTGGGGGTGGGCGTTGTGTGGTTGGTGAT
GGGGGGAGGGAGGGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGG
AGGATGGGGGAAGGAGAGGAAAGAGGGGGGCTTACACAGAATTGGAGATG
AGTACGACAGGGGATGGAGGAGGGTTTGGAGGACGAGGAAGAGGAGGGGG
GGGAGGAGGGGGAGGAGGGAGGGGGGAAAGGGGTAAGCGGGGAAAGGAGG
AAAGGAGGGAGCGAAGGAGGGCAGTGCGTGCATGGTCCGGGACGGAGGAG
AGCGAGGAGGAAGGGGAGGGGGATGGACAGAGGGAGCAAGGGAGGGAGGG
AGGGAAGAGAATAATCAGTGATGAGGAAGAGGGAGTGGTTTTGGCATGAG
CAGGGAGAGAGGGAGGGAGGCAAGGAGGCAGGGAACGAAGCAAGGGGTTT
TTGTAGAGAGTTTTAGTGGGGGATTGTAGAGAGATCTATCAGTCTTTGTA
TCATACATGCACTTCCCCGCACTCTGCCTTAGATGAGTCAG back to topprotein sequence of jgi.p|Nanoce1779_2|662919 >mRNA_3385-protein ID=mRNA_3385-protein|Name=jgi.p|Nanoce1779_2|662919|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MLRALDPVQGHMESLSMHMQHGVDPASPPPACYHCLWGHILPGAYLLFRS
FLLILEAISLRQPKRFSPRTLGRLRAYSSLIAGPFLAMGEGITHKAWHAG
NLQHFSIYLLIFMDGLVAWMCLVGGRAGGRKGERRLWPMSLLGVWEGGML
GCVGWEMVSHFHGGALITQMHAMMFPLLSLAATVLVVERVVMRGEREGLR
LAGAVAMAWVGCWFSLIGPGFWWEGGREGWLGKAYDEVREGGEKGVMEGH
EVLMWSATLLTFVFVVAFLGVGVVWLVMGGGREGGEEEEEEEEWEDGGRR
GKRGAYTELEMSTTGDGGGFGGRGRGGGGGGGGGRGERGKRGKEERRERR
RAVRAWSGTEESEEEGEGDGQREQGREGGKRIISDEEEGVVLA* back to topmRNA from alignment at scaffold_6:186965..189298- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3385 ID=mRNA_3385|Name=jgi.p|Nanoce1779_2|662919|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp|location=Sequence derived from alignment at scaffold_6:186965..189298- (Nannochloropsis oceanica)
CGTACATGGCCCGTGATACCTCGATTCCTGTCACGCTCCGCCTGGATTGA
AACAGGTGGCTTCATGTCCGGTTTCGTGATGCGGTGGCGCTACTACTGCT
TGTGATTGTCGTAGGGTCACAGTGTAGTATCGGTAGCTGCGCTAATGCCC
CTATGGCCCCCGGATCTCCGATTATGGTTATGAGGAGGAGGTCATGGTGG
TTGTTCCGTCCTGTGAATGTGTGGAACGAATATGAGTGTAATCAAAATTA
GATGGGTGCGTTGTTTGAAAGGATGCCACAAATAAATTTTGTTTTGGCAT
CGTATTGCCACGTTTGCGGATAGCATGTGGGAGCACGGAGGGCCTTGAGC
ATTGAAAGTAAAAGCGACCGACCATCAGGAATGATAAAACAATCATTGAG
AAGCCAACCGCTGGTAGCAGCTCGCTTTTCCAAAATTATGACGTGTCCTT
TTTTCCTAAGCGCCCATAGACATACCATCCACAGCGCAGGCAAGGAAACA
AACAAAGCCGTGCGGGGATGCTGCGGGCTCTGGATCCCGTCCAGGGTCAT
ATGGAGAGCCTGAGTATGCACATGGTACGTAAATCAGGAGGAGGAACAAG
GGAGAGGCTTCGGGGTGGAGAAGGGGAGGAGGGACGGAGGCCATATGGGG
AGCCCTTAGATCCCTAAGGCGCCATTCCAAGGCACACCGATAGCATCGAG
GACTGATCTGAAACAAGCTATGTGTGTGCGTATGCGTGCGCTTTGACTGG
GTCGATGGGCTTGGCAAATCCGGGTCGAGAAGGATCGGTCGAGGCCGGCT
CTCGCGTTCATGCCATATGTCCCGCTCCCTATCCCAACAGGTCGCTCCCT
GCCCCCTCTTCCCCAACTCCTGTCCGCAACCTCGCACCCGCAACGACAAG
TAGCCGACCACTTTCTCATTCTTGCTCTCCGTGCCTTCCCCTCCCTCCCC
CCTTCCCCTCCCTACCCCTTCCAGCAGCATGGCGTGGACCCAGCCAGCCC
GCCCCCCGCCTGCTACCACTGCCTATGGGGGCACATTCTCCCCGGTGCCT
ACCTCCTCTTTCGATCCTTCCTCCTGATCCTCGAGGCCATCTCCCTACGT
CAACCCAAGGTACGTTCAATGCACCCACGGTCACCGCCCCCTGCCATCAT
GGCCACCATCTCACCTTCCCTCCCTCCCTCTCTTCCCTCCCTTCCCCCAA
AGCGCTTTTCTCCACGGACCCTCGGTCGACTCCGCGCGTACAGCAGCTTG
ATAGCCGGCCCGTTCCTGGCAATGGGGGAAGGAATCACGCACAAGGCCTG
GCATGCAGGGAACTTGCAACATTTTTCGATCTACCTGTTGATTTTCATGG
ATGGCCTCGTGGCGTGGATGTGCTTGGTGGGAGGGAGGGCGGGAGGGAGG
AAGGGGGAGAGGAGGTTATGGCCCATGAGTCTGCTGGGGGTGTGGGAGGG
GGGAATGCTGGGGTGCGTCGGATGGGAAATGGTGAGTCATTTTCACGGGG
GGGCGTTGATCACCCAGATGCACGCCATGATGTTCCCCTTGCTGTCTCTG
GCAGCCACAGTGCTGGTGGTGGAGAGGGTGGTGATGAGGGGGGAAAGGGA
GGGACTACGGTTGGCAGGGGCTGTGGCGATGGCGTGGGTTGGGTGTTGGT
TTTCGTTGATTGGACCAGGTTTTTGGTGGGAGGGAGGGAGGGAAGGGTGG
CTGGGGAAGGCGTATGATGAGGTGAGGGAGGGAGGGGAGAAGGGGGTGAT
GGAGGGGCATGAGGTGCTCATGTGGTCGGCGACATTGTTGACTTTTGTAT
TTGTGGTGGCCTTTCTGGGGGTGGGCGTTGTGTGGTTGGTGATGGGGGGA
GGGAGGGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGATGG
GGGAAGGAGAGGAAAGAGGGGGGCTTACACAGAATTGGAGATGAGTACGA
CAGGGGATGGAGGAGGGTTTGGAGGACGAGGAAGAGGAGGGGGGGGAGGA
GGGGGAGGAGGGAGGGGGGAAAGGGGTAAGCGGGGAAAGGAGGAAAGGAG
GGAGCGAAGGAGGGCAGTGCGTGCATGGTCCGGGACGGAGGAGAGCGAGG
AGGAAGGGGAGGGGGATGGACAGAGGGAGCAAGGGAGGGAGGGAGGGAAG
AGAATAATCAGTGATGAGGAAGAGGGAGTGGTTTTGGCATGAGCAGGGAG
AGAGGGAGGGAGGCAAGGAGGCAGGGAACGAAGCAAGGGGTTTTTGTAGA
GAGTTTTAGTGGGGGATTGTAGAGAGATCTATCAGTCTTTGTATCATACA
TGCACTTCCCCGCACTCTGCCTTAGATGAGTCAG back to topCoding sequence (CDS) from alignment at scaffold_6:186965..189298- >mRNA_3385 ID=mRNA_3385|Name=jgi.p|Nanoce1779_2|662919|organism=Nannochloropsis oceanica|type=CDS|length=3546bp|location=Sequence derived from alignment at scaffold_6:186965..189298- (Nannochloropsis oceanica)
CGCTTTTCTCCACGGACCCTCGGTCGACTCCGCGCGTACAGCAGCTTGAT
AGCCGGCCCGTTCCTGGCAATGGGGGAAGGAATCACGCACAAGGCCTGGC
ATGCAGGGAACTTGCAACATTTTTCGATCTACCTGTTGATTTTCATGGAT
GGCCTCGTGGCGTGGATGTGCTTGGTGGGAGGGAGGGCGGGAGGGAGGAA
GGGGGAGAGGAGGTTATGGCCCATGAGTCTGCTGGGGGTGTGGGAGGGGG
GAATGCTGGGGTGCGTCGGATGGGAAATGGTGAGTCATTTTCACGGGGGG
GCGTTGATCACCCAGATGCACGCCATGATGTTCCCCTTGCTGTCTCTGGC
AGCCACAGTGCTGGTGGTGGAGAGGGTGGTGATGAGGGGGGAAAGGGAGG
GACTACGGTTGGCAGGGGCTGTGGCGATGGCGTGGGTTGGGTGTTGGTTT
TCGTTGATTGGACCAGGTTTTTGGTGGGAGGGAGGGAGGGAAGGGTGGCT
GGGGAAGGCGTATGATGAGGTGAGGGAGGGAGGGGAGAAGGGGGTGATGG
AGGGGCATGAGGTGCTCATGTGGTCGGCGACATTGTTGACTTTTGTATTT
GTGGTGGCCTTTCTGGGGGTGGGCGTTGTGTGGTTGGTGATGGGGGGAGG
GAGGGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGGAGGATGGGG
GAAGGAGAGGAAAGAGGGGGGCTTACACAGAATTGGAGATGAGTACGACA
GGGGATGGAGGAGGGTTTGGAGGACGAGGAAGAGGAGGGGGGGGAGGAGG
GGGAGGAGGGAGGGGGGAAAGGGGTAAGCGGGGAAAGGAGGAAAGGAGGG
AGCGAAGGAGGGCAGTGCGTGCATGGTCCGGGACGGAGGAGAGCGAGGAG
GAAGGGGAGGGGGATGGACAGAGGGAGCAAGGGAGGGAGGGAGGGAAGAG
AATAATCAGTGATGAGGAAGAGGGAGTGGTTTTGGCATGACAGCATGGCG
TGGACCCAGCCAGCCCGCCCCCCGCCTGCTACCACTGCCTATGGGGGCAC
ATTCTCCCCGGTGCCTACCTCCTCTTTCGATCCTTCCTCCTGATCCTCGA
GGCCATCTCCCTACGTCAACCCAAGATGCTGCGGGCTCTGGATCCCGTCC
AGGGTCATATGGAGAGCCTGAGTATGCACATGCGCTTTTCTCCACGGACC
CTCGGTCGACTCCGCGCGTACAGCAGCTTGATAGCCGGCCCGTTCCTGGC
AATGGGGGAAGGAATCACGCACAAGGCCTGGCATGCAGGGAACTTGCAAC
ATTTTTCGATCTACCTGTTGATTTTCATGGATGGCCTCGTGGCGTGGATG
TGCTTGGTGGGAGGGAGGGCGGGAGGGAGGAAGGGGGAGAGGAGGTTATG
GCCCATGAGTCTGCTGGGGGTGTGGGAGGGGGGAATGCTGGGGTGCGTCG
GATGGGAAATGGTGAGTCATTTTCACGGGGGGGCGTTGATCACCCAGATG
CACGCCATGATGTTCCCCTTGCTGTCTCTGGCAGCCACAGTGCTGGTGGT
GGAGAGGGTGGTGATGAGGGGGGAAAGGGAGGGACTACGGTTGGCAGGGG
CTGTGGCGATGGCGTGGGTTGGGTGTTGGTTTTCGTTGATTGGACCAGGT
TTTTGGTGGGAGGGAGGGAGGGAAGGGTGGCTGGGGAAGGCGTATGATGA
GGTGAGGGAGGGAGGGGAGAAGGGGGTGATGGAGGGGCATGAGGTGCTCA
TGTGGTCGGCGACATTGTTGACTTTTGTATTTGTGGTGGCCTTTCTGGGG
GTGGGCGTTGTGTGGTTGGTGATGGGGGGAGGGAGGGAGGGAGGGGAGGA
GGAGGAGGAGGAGGAGGAGTGGGAGGATGGGGGAAGGAGAGGAAAGAGGG
GGGCTTACACAGAATTGGAGATGAGTACGACAGGGGATGGAGGAGGGTTT
GGAGGACGAGGAAGAGGAGGGGGGGGAGGAGGGGGAGGAGGGAGGGGGGA
AAGGGGTAAGCGGGGAAAGGAGGAAAGGAGGGAGCGAAGGAGGGCAGTGC
GTGCATGGTCCGGGACGGAGGAGAGCGAGGAGGAAGGGGAGGGGGATGGA
CAGAGGGAGCAAGGGAGGGAGGGAGGGAAGAGAATAATCAGTGATGAGGA
AGAGGGAGTGGTTTTGGCATGACAGCATGGCGTGGACCCAGCCAGCCCGC
CCCCCGCCTGCTACCACTGCCTATGGGGGCACATTCTCCCCGGTGCCTAC
CTCCTCTTTCGATCCTTCCTCCTGATCCTCGAGGCCATCTCCCTACGTCA
ACCCAAGATGCTGCGGGCTCTGGATCCCGTCCAGGGTCATATGGAGAGCC
TGAGTATGCACATGCGCTTTTCTCCACGGACCCTCGGTCGACTCCGCGCG
TACAGCAGCTTGATAGCCGGCCCGTTCCTGGCAATGGGGGAAGGAATCAC
GCACAAGGCCTGGCATGCAGGGAACTTGCAACATTTTTCGATCTACCTGT
TGATTTTCATGGATGGCCTCGTGGCGTGGATGTGCTTGGTGGGAGGGAGG
GCGGGAGGGAGGAAGGGGGAGAGGAGGTTATGGCCCATGAGTCTGCTGGG
GGTGTGGGAGGGGGGAATGCTGGGGTGCGTCGGATGGGAAATGGTGAGTC
ATTTTCACGGGGGGGCGTTGATCACCCAGATGCACGCCATGATGTTCCCC
TTGCTGTCTCTGGCAGCCACAGTGCTGGTGGTGGAGAGGGTGGTGATGAG
GGGGGAAAGGGAGGGACTACGGTTGGCAGGGGCTGTGGCGATGGCGTGGG
TTGGGTGTTGGTTTTCGTTGATTGGACCAGGTTTTTGGTGGGAGGGAGGG
AGGGAAGGGTGGCTGGGGAAGGCGTATGATGAGGTGAGGGAGGGAGGGGA
GAAGGGGGTGATGGAGGGGCATGAGGTGCTCATGTGGTCGGCGACATTGT
TGACTTTTGTATTTGTGGTGGCCTTTCTGGGGGTGGGCGTTGTGTGGTTG
GTGATGGGGGGAGGGAGGGAGGGAGGGGAGGAGGAGGAGGAGGAGGAGGA
GTGGGAGGATGGGGGAAGGAGAGGAAAGAGGGGGGCTTACACAGAATTGG
AGATGAGTACGACAGGGGATGGAGGAGGGTTTGGAGGACGAGGAAGAGGA
GGGGGGGGAGGAGGGGGAGGAGGGAGGGGGGAAAGGGGTAAGCGGGGAAA
GGAGGAAAGGAGGGAGCGAAGGAGGGCAGTGCGTGCATGGTCCGGGACGG
AGGAGAGCGAGGAGGAAGGGGAGGGGGATGGACAGAGGGAGCAAGGGAGG
GAGGGAGGGAAGAGAATAATCAGTGATGAGGAAGAGGGAGTGGTTTTGGC
ATGACAGCATGGCGTGGACCCAGCCAGCCCGCCCCCCGCCTGCTACCACT
GCCTATGGGGGCACATTCTCCCCGGTGCCTACCTCCTCTTTCGATCCTTC
CTCCTGATCCTCGAGGCCATCTCCCTACGTCAACCCAAGATGCTGCGGGC
TCTGGATCCCGTCCAGGGTCATATGGAGAGCCTGAGTATGCACATG back to top
|