jgi.p|Nanoce1779_2|581952, mRNA_3384 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581952
Unique NamemRNA_3384
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length563
Alignment locationscaffold_6:185706..186268 +

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Properties
Property NameValue
TranscriptId582038
TrackFilteredModels2
ProteinId581952
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:185706..186268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581952gene_3384Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581952mRNA_3384-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3384CDS_3384Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3384 ID=mRNA_3384|Name=jgi.p|Nanoce1779_2|581952|organism=Nannochloropsis oceanica|type=mRNA|length=563bp
GAGGTGATGGTGGAGGGAGTAGTACCCATCACCACAACCATCAGTAACAG
CAGCAGCAGCAGCAACAGCACCTCCACCACCAGCAGCAACAATAACAACA
ACAACAGCAGCAGCAGTAGCAGCAGTCCCTCTGCTCCTTCACTTTCCCAC
CCACCGCCGATCTGGCCCCCGCACGGCGACTGGAGCCTCCCCTCCCACCC
CCCCCTACATCACTCCCTCTCTCTCGTCAGCGCCTATGCTCATCGGCCCT
CCGCGCACACCACGGGCGAGCCCGCCTTCACCAGCTACCATGGAAAATTT
AAGGGAGCGGTGGATTACATCTGGTACAATGGAAAGGAAGGCGGGACGGA
GGGAGGGACCCAAGGAGGGAGTAGGTTGAGGTGTGTGGAGTTTTGGGGCA
TGCCCACAGTGGGTGAGTTGAGGAGTCAGGTGGGCCTGCCGTGTCGCGCA
TGTCCTAGCGACCATCTCCCCTTGGTGGTGAAGATGGAGTGGATGTGAAA
ATACCCGGATTTGCCTTGTTTCGTTCCCCTCCTTCCTTCCCTCCCCTCCT
CCCCTCCCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|581952

>mRNA_3384-protein ID=mRNA_3384-protein|Name=jgi.p|Nanoce1779_2|581952|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MVEGVVPITTTISNSSSSSNSTSTTSSNNNNNNSSSSSSSPSAPSLSHPP
PIWPPHGDWSLPSHPPLHHSLSLVSAYAHRPSAHTTGEPAFTSYHGKFKG
AVDYIWYNGKEGGTEGGTQGGSRLRCVEFWGMPTVGELRSQVGLPCRACP
SDHLPLVVKMEWM*
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mRNA from alignment at scaffold_6:185706..186268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3384 ID=mRNA_3384|Name=jgi.p|Nanoce1779_2|581952|organism=Nannochloropsis oceanica|type=mRNA|length=563bp|location=Sequence derived from alignment at scaffold_6:185706..186268+ (Nannochloropsis oceanica)
GAGGTGATGGTGGAGGGAGTAGTACCCATCACCACAACCATCAGTAACAG
CAGCAGCAGCAGCAACAGCACCTCCACCACCAGCAGCAACAATAACAACA
ACAACAGCAGCAGCAGTAGCAGCAGTCCCTCTGCTCCTTCACTTTCCCAC
CCACCGCCGATCTGGCCCCCGCACGGCGACTGGAGCCTCCCCTCCCACCC
CCCCCTACATCACTCCCTCTCTCTCGTCAGCGCCTATGCTCATCGGCCCT
CCGCGCACACCACGGGCGAGCCCGCCTTCACCAGCTACCATGGAAAATTT
AAGGGAGCGGTGGATTACATCTGGTACAATGGAAAGGAAGGCGGGACGGA
GGGAGGGACCCAAGGAGGGAGTAGGTTGAGGTGTGTGGAGTTTTGGGGCA
TGCCCACAGTGGGTGAGTTGAGGAGTCAGGTGGGCCTGCCGTGTCGCGCA
TGTCCTAGCGACCATCTCCCCTTGGTGGTGAAGATGGAGTGGATGTGAAA
ATACCCGGATTTGCCTTGTTTCGTTCCCCTCCTTCCTTCCCTCCCCTCCT
CCCCTCCCTCCCT
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Coding sequence (CDS) from alignment at scaffold_6:185706..186268+

>mRNA_3384 ID=mRNA_3384|Name=jgi.p|Nanoce1779_2|581952|organism=Nannochloropsis oceanica|type=CDS|length=492bp|location=Sequence derived from alignment at scaffold_6:185706..186268+ (Nannochloropsis oceanica)
ATGGTGGAGGGAGTAGTACCCATCACCACAACCATCAGTAACAGCAGCAG
CAGCAGCAACAGCACCTCCACCACCAGCAGCAACAATAACAACAACAACA
GCAGCAGCAGTAGCAGCAGTCCCTCTGCTCCTTCACTTTCCCACCCACCG
CCGATCTGGCCCCCGCACGGCGACTGGAGCCTCCCCTCCCACCCCCCCCT
ACATCACTCCCTCTCTCTCGTCAGCGCCTATGCTCATCGGCCCTCCGCGC
ACACCACGGGCGAGCCCGCCTTCACCAGCTACCATGGAAAATTTAAGGGA
GCGGTGGATTACATCTGGTACAATGGAAAGGAAGGCGGGACGGAGGGAGG
GACCCAAGGAGGGAGTAGGTTGAGGTGTGTGGAGTTTTGGGGCATGCCCA
CAGTGGGTGAGTTGAGGAGTCAGGTGGGCCTGCCGTGTCGCGCATGTCCT
AGCGACCATCTCCCCTTGGTGGTGAAGATGGAGTGGATGTGA
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Synonyms
Publications