jgi.p|Nanoce1779_2|581949, mRNA_3382 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581949
Unique NamemRNA_3382
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_6:183522..184025 -

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Properties
Property NameValue
TranscriptId582035
TrackFilteredModels2
ProteinId581949
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:183522..184025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581949gene_3382Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581949mRNA_3382-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3382CDS_3382Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3382 ID=mRNA_3382|Name=jgi.p|Nanoce1779_2|581949|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
CCCCGCCCCTGCTCCCCTGCTCCTCCTCGTCCTCCTCTTCCTCCTCCTGA
TCCTATGCAGCCGCGCCTGCCATGTCCATTGGGCTGAGACTTATCGGAAG
ATTCTTGTCCGTGCTCTGGGCCTCGGAATTTCTTGCGCTGGTGCTGCTGG
CACTGATGCTGGCGATGAGAAGGAGGAGGATGGGGAGGTTGCGAGGCTTC
TCCTGCCACATGCATGTCCTCCATGATGTAGTGGTCGAGTCGGAAAAGTT
GAGTAGATTGCTGTGGTGTAGCGATATTGCTACTGGCGGTACAGGTGCTG
GTGCTGTAGACGATGTTGATATTGGTGTTGCTACTGCTACTGCTACTTGT
AGGGGCCCAAGACGTAGAGGGGGGAGGTCGACGGGTGTTGCGTATGAATG
CAAGGACTGAAAGGAGCCGCTGCCCTCCGCCCCCGTGGATCATTCACCAA
GTACTGCCTGCGTAGGAAAGAAGTCTTGACTGGGAGGCTCTGGTTGTGTC
TGTT
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protein sequence of jgi.p|Nanoce1779_2|581949

>mRNA_3382-protein ID=mRNA_3382-protein|Name=jgi.p|Nanoce1779_2|581949|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MSIGLRLIGRFLSVLWASEFLALVLLALMLAMRRRRMGRLRGFSCHMHVL
HDVVVESEKLSRLLWCSDIATGGTGAGAVDDVDIGVATATATCRGPRRRG
GRSTGVAYECKD*
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mRNA from alignment at scaffold_6:183522..184025-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3382 ID=mRNA_3382|Name=jgi.p|Nanoce1779_2|581949|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at scaffold_6:183522..184025- (Nannochloropsis oceanica)
CCCCGCCCCTGCTCCCCTGCTCCTCCTCGTCCTCCTCTTCCTCCTCCTGA
TCCTATGCAGCCGCGCCTGCCATGTCCATTGGGCTGAGACTTATCGGAAG
ATTCTTGTCCGTGCTCTGGGCCTCGGAATTTCTTGCGCTGGTGCTGCTGG
CACTGATGCTGGCGATGAGAAGGAGGAGGATGGGGAGGTTGCGAGGCTTC
TCCTGCCACATGCATGTCCTCCATGATGTAGTGGTCGAGTCGGAAAAGTT
GAGTAGATTGCTGTGGTGTAGCGATATTGCTACTGGCGGTACAGGTGCTG
GTGCTGTAGACGATGTTGATATTGGTGTTGCTACTGCTACTGCTACTTGT
AGGGGCCCAAGACGTAGAGGGGGGAGGTCGACGGGTGTTGCGTATGAATG
CAAGGACTGAAAGGAGCCGCTGCCCTCCGCCCCCGTGGATCATTCACCAA
GTACTGCCTGCGTAGGAAAGAAGTCTTGACTGGGAGGCTCTGGTTGTGTC
TGTT
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Coding sequence (CDS) from alignment at scaffold_6:183522..184025-

>mRNA_3382 ID=mRNA_3382|Name=jgi.p|Nanoce1779_2|581949|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_6:183522..184025- (Nannochloropsis oceanica)
ATGTCCATTGGGCTGAGACTTATCGGAAGATTCTTGTCCGTGCTCTGGGC
CTCGGAATTTCTTGCGCTGGTGCTGCTGGCACTGATGCTGGCGATGAGAA
GGAGGAGGATGGGGAGGTTGCGAGGCTTCTCCTGCCACATGCATGTCCTC
CATGATGTAGTGGTCGAGTCGGAAAAGTTGAGTAGATTGCTGTGGTGTAG
CGATATTGCTACTGGCGGTACAGGTGCTGGTGCTGTAGACGATGTTGATA
TTGGTGTTGCTACTGCTACTGCTACTTGTAGGGGCCCAAGACGTAGAGGG
GGGAGGTCGACGGGTGTTGCGTATGAATGCAAGGACTGA
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Synonyms
Publications