Properties
| Property Name | Value |
|---|
| TranscriptId | 539271 |
| Track | FilteredModels2 |
| ProteinId | 539185 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:180670..183085 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3381 ID=mRNA_3381|Name=jgi.p|Nanoce1779_2|539185|organism=Nannochloropsis oceanica|type=mRNA|length=2026bp
CACACAAGACAAGCAATGAGGACGCCCACCATGAGCATGACCATGGAGCT
GTGCCTGGGCGCGGTCGCGGTGCTGGTGGCGATGGCATTCGTGCCGGAGA
CAGACGCCTTCCTCCAACCCCCTTTGGGGCCATCACCATCAACACCCTTC
TCCCTCTTCCCCTTCGCAAAATCTTCCCCATCACTATCACGGCGGCCAGA
TCTGCGTCCGCTTCATCAACCTCCCGGCCATCCTTTCCCTACCCTTCAAA
CCCGTCCTTTCTCGCACCTCAATGCTGTCTCCTTTCTATCTCACCTCCGC
ATCGAACCGGCCGCGTTCAAAACCTCTACCAATGCCGTCCTCCGCCTCGT
CTCCTCCTGCTCCCTCGGTCTTTTTGCCGCCTCTCAAGGTCTGCTGGACC
AGTCCTCCCTTTCCACCCTCTCCCGCCTCATCTTCGCCTTCTTCCAACCC
GCCCTCCTCTTCACGAATGTCGCCACCACCCTGGCCACCCCCTCCTCCCA
CGGCGCATCCCTCGCAGTGCTCCCGGTCTTCGCCCTCCTCCAAATCCTTT
TCGGCTCCCTCTACGGGAAGGGCCTCGCCTCCTTCCTCCGCCTTGAACCC
ACCTCTGACGAAGGCAAGGAGCTCGCGGTGTGTTGTGCCTTTGCCAATTC
CGGACCCCTCCCCCTCCTCTTCGCCGACGCTTTTCTCCGCCTCCACCCCA
CCGACCCTACCCTCTACCCACGGGCCGTGGCTTATATCTCCTTCTATCTC
GTGGCCTGGTCCCCCCTCTTCTGGACCATCGGTGCCACCATCCTAGGCGC
TGTCAAAACTCAACCCGCCTATTCCTCTCTTCCATCCTCTTCCTCCCTCC
CGCCCTCGCCCCCGCCCACCCCCTCTTCAACCATCCGGAAGGTATTCTCT
CATCCACTCTGTCAAAAAGCAATTTCTCCCCCAACTCTCGGGTGCTTATT
TGGCGCCATCGTTGGCGTCACCCCTGTTCTCCGCTCCCTCTTCTTCGGTC
CTGCTGCCCCTCTTGCTTCTCTCTTTGATGCTTTACGTACCATGGGCTCG
GCCTACCTCCCTACCGTCCTCCTCGTCCTTGCTGGGTCTCTGGCAAAGGG
CTTCGAAACTCTGAGCCTGAAAGACACGGCCCTCTTCAAGCGCACGGCCG
CCATCTGCGTCGCCCGCTTCGTTCTGATGCCCCTCACCGCCCTGGCCTTG
CTGAGGGTAGGGACGGCAGCCGCGCTCATCCCCTCATCCGACAAGCTCTT
GGCCTTCATCCTCCTCCTCCAAGCGTGCATGCCCTGTGCCCAAAACACCG
TCGTGATCTTACAACTTCAAAAGCGACCGGCAGCGGCTGCTTCGATGGCC
ACCCTCGTCTCGCTCACTTACATCCTCGCCGTCATTCCCATGGGGTTCCT
GCTCTCGGCCGTGCTGCAGTATGTTGGACTGTAAGCAAGCCCTCCTTCCC
TCCTTCCCTACCTCCCTCCCTTTTCTTCGTTTCGCAATAAGGTCCGTGGG
CGAGTTTTGGCCTTTATGGCGGCCTTGAAGAGGACAAAAGAGAGAAGGAA
AAAGGAAGGGAGGAAGGGGTTTGTAAATACGAAGTAATATCTTATAAATA
CACAGGAAAATAACAATCTGTATAAGTCGAGAGTCCTGGTGAAAAGAGAC
AGAATAACGGCATATGATCAGAACCCAAGGCAATCGTTTCCACCTTTAGA
GGAGTAAGTGGATGGATTGGATGGATGAATGACGGTCAAAAAACAAGAGG
AAAATATCGCCCGGAGGAAAAGTTCAAAATTTTGATTCATGTCTGTTGGC
ATAGGTGTATGTGGGGGTGGGGTTAGGGATGCAGGGAGCGACCGTTGAAA
GTCAGCAGGTCTTGAGCAAGTGAAGGCTCGCCTTGAAACTGCCGTCACCA
CCACGTATTAATGTTAATAACACTGATTGCCACGTGCCATATAGGACAGG
GAGGGATAAAAGGAAGCCAAAGGGTAAGAAAGGAAGGACATCCAAAAAGA
GGGAGACCCATGAGCTCTTTGCTAAC back to topprotein sequence of jgi.p|Nanoce1779_2|539185 >mRNA_3381-protein ID=mRNA_3381-protein|Name=jgi.p|Nanoce1779_2|539185|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MRTPTMSMTMELCLGAVAVLVAMAFVPETDAFLQPPLGPSPSTPFSLFPF
AKSSPSLSRRPDLRPLHQPPGHPFPTLQTRPFSHLNAVSFLSHLRIEPAA
FKTSTNAVLRLVSSCSLGLFAASQGLLDQSSLSTLSRLIFAFFQPALLFT
NVATTLATPSSHGASLAVLPVFALLQILFGSLYGKGLASFLRLEPTSDEG
KELAVCCAFANSGPLPLLFADAFLRLHPTDPTLYPRAVAYISFYLVAWSP
LFWTIGATILGAVKTQPAYSSLPSSSSLPPSPPPTPSSTIRKVFSHPLCQ
KAISPPTLGCLFGAIVGVTPVLRSLFFGPAAPLASLFDALRTMGSAYLPT
VLLVLAGSLAKGFETLSLKDTALFKRTAAICVARFVLMPLTALALLRVGT
AAALIPSSDKLLAFILLLQACMPCAQNTVVILQLQKRPAAAASMATLVSL
TYILAVIPMGFLLSAVLQYVGL* back to topmRNA from alignment at scaffold_6:180670..183085- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3381 ID=mRNA_3381|Name=jgi.p|Nanoce1779_2|539185|organism=Nannochloropsis oceanica|type=mRNA|length=2416bp|location=Sequence derived from alignment at scaffold_6:180670..183085- (Nannochloropsis oceanica)
CACACAAGACAAGCAATGAGGACGCCCACCATGAGCATGACCATGGAGCT
GTGCCTGGGCGCGGTCGCGGTGCTGGTGGCGATGGCATTCGTGCCGGAGA
CAGGTACATTCTTGGAGGACAGAGGGGCGGAGGGAGGGATGTGGTGGGCG
AGGATGAAAAGAAACGGGCTGCCAGGCCGCCATCACAATGTCCCTCATTT
CGATGGAACGTCTGCTTTACCCATCATCCTGCTGATGCCACTGTGTAGAA
GCGGCTATGATCTTATCTGACCTGCATCATTTTACCTTCTCCCGCCCATT
TCTCCTCTAACTCAACCCCCGAAAAGACGCCTTCCTCCAACCCCCTTTGG
GGCCATCACCATCAACACCCTTCTCCCTCTTCCCCTTCGCAAAATCTTCC
CCATCACTATCACGGCGGCCAGATCTGCGTCCGCTTCATCAACCTCCCGG
CCATCCTTTCCCTACCCTTCAAACCCGTCCTTTCTCGCACCTCAATGCTG
TCTCCTTTCTATCTCACCTCCGCATCGAACCGGCCGCGTTCAAAACCTCT
ACCAATGCCGTCCTCCGCCTCGTCTCCTCCTGCTCCCTCGGTCTTTTTGC
CGCCTCTCAAGGTCTGCTGGACCAGTCCTCCCTTTCCACCCTCTCCCGCC
TCATCTTCGCCTTCTTCCAACCCGCCCTCCTCTTCACGAATGTCGCCACC
ACCCTGGCCACCCCCTCCTCCCACGGCGCATCCCTCGCAGTGCTCCCGGT
CTTCGCCCTCCTCCAAATCCTTTTCGGCTCCCTCTACGGGAAGGGCCTCG
CCTCCTTCCTCCGCCTTGAACCCACCTCTGACGAAGGCAAGGAGCTCGCG
GTGTGTTGTGCCTTTGCCAATTCCGGACCCCTCCCCCTCCTCTTCGCCGA
CGCTTTTCTCCGCCTCCACCCCACCGACCCTACCCTCTACCCACGGGCCG
TGGCTTATATCTCCTTCTATCTCGTGGCCTGGTCCCCCCTCTTCTGGACC
ATCGGTGCCACCATCCTAGGCGCTGTCAAAACTCAACCCGCCTATTCCTC
TCTTCCATCCTCTTCCTCCCTCCCGCCCTCGCCCCCGCCCACCCCCTCTT
CAACCATCCGGAAGGTATTCTCTCATCCACTCTGTCAAAAAGCAATTTCT
CCCCCAACTCTCGGGTGCTTATTTGGCGCCATCGTTGGCGTCACCCCTGT
TCTCCGCTCCCTCTTCTTCGGTCCTGCTGCCCCTCTTGCTTCTCTCTTTG
ATGCTTTACGTACCATGGGCTCGGCCTACCTCCCTACCGTCCTCCTCGTC
CTTGCTGGGTCTCTGGCAAAGGTGAGCCAGCTTTTCCTCCTTTCCTCCCT
CCCTCCCTCGTTCCCTCGACATCCTTCCTCCCTTCATTCTTTCTTCCCGC
CTTTCCCTCTCTTTTGTATCAATTCGTGGGACCCATGTAAACACACTGAA
ACTCACCCTCCCTCCTTCCCTCCTTCCCGCCCTGGTAGGGCTTCGAAACT
CTGAGCCTGAAAGACACGGCCCTCTTCAAGCGCACGGCCGCCATCTGCGT
CGCCCGCTTCGTTCTGATGCCCCTCACCGCCCTGGCCTTGCTGAGGGTAG
GGACGGCAGCCGCGCTCATCCCCTCATCCGACAAGCTCTTGGCCTTCATC
CTCCTCCTCCAAGCGTGCATGCCCTGTGCCCAAAACACCGTCGTGATCTT
ACAACTTCAAAAGCGACCGGCAGCGGCTGCTTCGATGGCCACCCTCGTCT
CGCTCACTTACATCCTCGCCGTCATTCCCATGGGGTTCCTGCTCTCGGCC
GTGCTGCAGTATGTTGGACTGTAAGCAAGCCCTCCTTCCCTCCTTCCCTA
CCTCCCTCCCTTTTCTTCGTTTCGCAATAAGGTCCGTGGGCGAGTTTTGG
CCTTTATGGCGGCCTTGAAGAGGACAAAAGAGAGAAGGAAAAAGGAAGGG
AGGAAGGGGTTTGTAAATACGAAGTAATATCTTATAAATACACAGGAAAA
TAACAATCTGTATAAGTCGAGAGTCCTGGTGAAAAGAGACAGAATAACGG
CATATGATCAGAACCCAAGGCAATCGTTTCCACCTTTAGAGGAGTAAGTG
GATGGATTGGATGGATGAATGACGGTCAAAAAACAAGAGGAAAATATCGC
CCGGAGGAAAAGTTCAAAATTTTGATTCATGTCTGTTGGCATAGGTGTAT
GTGGGGGTGGGGTTAGGGATGCAGGGAGCGACCGTTGAAAGTCAGCAGGT
CTTGAGCAAGTGAAGGCTCGCCTTGAAACTGCCGTCACCACCACGTATTA
ATGTTAATAACACTGATTGCCACGTGCCATATAGGACAGGGAGGGATAAA
AGGAAGCCAAAGGGTAAGAAAGGAAGGACATCCAAAAAGAGGGAGACCCA
TGAGCTCTTTGCTAAC back to topCoding sequence (CDS) from alignment at scaffold_6:180670..183085- >mRNA_3381 ID=mRNA_3381|Name=jgi.p|Nanoce1779_2|539185|organism=Nannochloropsis oceanica|type=CDS|length=4257bp|location=Sequence derived from alignment at scaffold_6:180670..183085- (Nannochloropsis oceanica)
GGCTTCGAAACTCTGAGCCTGAAAGACACGGCCCTCTTCAAGCGCACGGC
CGCCATCTGCGTCGCCCGCTTCGTTCTGATGCCCCTCACCGCCCTGGCCT
TGCTGAGGGTAGGGACGGCAGCCGCGCTCATCCCCTCATCCGACAAGCTC
TTGGCCTTCATCCTCCTCCTCCAAGCGTGCATGCCCTGTGCCCAAAACAC
CGTCGTGATCTTACAACTTCAAAAGCGACCGGCAGCGGCTGCTTCGATGG
CCACCCTCGTCTCGCTCACTTACATCCTCGCCGTCATTCCCATGGGGTTC
CTGCTCTCGGCCGTGCTGCAGTATGTTGGACTGTAAACGCCTTCCTCCAA
CCCCCTTTGGGGCCATCACCATCAACACCCTTCTCCCTCTTCCCCTTCGC
AAAATCTTCCCCATCACTATCACGGCGGCCAGATCTGCGTCCGCTTCATC
AACCTCCCGGCCATCCTTTCCCTACCCTTCAAACCCGTCCTTTCTCGCAC
CTCAATGCTGTCTCCTTTCTATCTCACCTCCGCATCGAACCGGCCGCGTT
CAAAACCTCTACCAATGCCGTCCTCCGCCTCGTCTCCTCCTGCTCCCTCG
GTCTTTTTGCCGCCTCTCAAGGTCTGCTGGACCAGTCCTCCCTTTCCACC
CTCTCCCGCCTCATCTTCGCCTTCTTCCAACCCGCCCTCCTCTTCACGAA
TGTCGCCACCACCCTGGCCACCCCCTCCTCCCACGGCGCATCCCTCGCAG
TGCTCCCGGTCTTCGCCCTCCTCCAAATCCTTTTCGGCTCCCTCTACGGG
AAGGGCCTCGCCTCCTTCCTCCGCCTTGAACCCACCTCTGACGAAGGCAA
GGAGCTCGCGGTGTGTTGTGCCTTTGCCAATTCCGGACCCCTCCCCCTCC
TCTTCGCCGACGCTTTTCTCCGCCTCCACCCCACCGACCCTACCCTCTAC
CCACGGGCCGTGGCTTATATCTCCTTCTATCTCGTGGCCTGGTCCCCCCT
CTTCTGGACCATCGGTGCCACCATCCTAGGCGCTGTCAAAACTCAACCCG
CCTATTCCTCTCTTCCATCCTCTTCCTCCCTCCCGCCCTCGCCCCCGCCC
ACCCCCTCTTCAACCATCCGGAAGGTATTCTCTCATCCACTCTGTCAAAA
AGCAATTTCTCCCCCAACTCTCGGGTGCTTATTTGGCGCCATCGTTGGCG
TCACCCCTGTTCTCCGCTCCCTCTTCTTCGGTCCTGCTGCCCCTCTTGCT
TCTCTCTTTGATGCTTTACGTACCATGGGCTCGGCCTACCTCCCTACCGT
CCTCCTCGTCCTTGCTGGGTCTCTGGCAAAGATGAGGACGCCCACCATGA
GCATGACCATGGAGCTGTGCCTGGGCGCGGTCGCGGTGCTGGTGGCGATG
GCATTCGTGCCGGAGACAGGGCTTCGAAACTCTGAGCCTGAAAGACACGG
CCCTCTTCAAGCGCACGGCCGCCATCTGCGTCGCCCGCTTCGTTCTGATG
CCCCTCACCGCCCTGGCCTTGCTGAGGGTAGGGACGGCAGCCGCGCTCAT
CCCCTCATCCGACAAGCTCTTGGCCTTCATCCTCCTCCTCCAAGCGTGCA
TGCCCTGTGCCCAAAACACCGTCGTGATCTTACAACTTCAAAAGCGACCG
GCAGCGGCTGCTTCGATGGCCACCCTCGTCTCGCTCACTTACATCCTCGC
CGTCATTCCCATGGGGTTCCTGCTCTCGGCCGTGCTGCAGTATGTTGGAC
TGTAAACGCCTTCCTCCAACCCCCTTTGGGGCCATCACCATCAACACCCT
TCTCCCTCTTCCCCTTCGCAAAATCTTCCCCATCACTATCACGGCGGCCA
GATCTGCGTCCGCTTCATCAACCTCCCGGCCATCCTTTCCCTACCCTTCA
AACCCGTCCTTTCTCGCACCTCAATGCTGTCTCCTTTCTATCTCACCTCC
GCATCGAACCGGCCGCGTTCAAAACCTCTACCAATGCCGTCCTCCGCCTC
GTCTCCTCCTGCTCCCTCGGTCTTTTTGCCGCCTCTCAAGGTCTGCTGGA
CCAGTCCTCCCTTTCCACCCTCTCCCGCCTCATCTTCGCCTTCTTCCAAC
CCGCCCTCCTCTTCACGAATGTCGCCACCACCCTGGCCACCCCCTCCTCC
CACGGCGCATCCCTCGCAGTGCTCCCGGTCTTCGCCCTCCTCCAAATCCT
TTTCGGCTCCCTCTACGGGAAGGGCCTCGCCTCCTTCCTCCGCCTTGAAC
CCACCTCTGACGAAGGCAAGGAGCTCGCGGTGTGTTGTGCCTTTGCCAAT
TCCGGACCCCTCCCCCTCCTCTTCGCCGACGCTTTTCTCCGCCTCCACCC
CACCGACCCTACCCTCTACCCACGGGCCGTGGCTTATATCTCCTTCTATC
TCGTGGCCTGGTCCCCCCTCTTCTGGACCATCGGTGCCACCATCCTAGGC
GCTGTCAAAACTCAACCCGCCTATTCCTCTCTTCCATCCTCTTCCTCCCT
CCCGCCCTCGCCCCCGCCCACCCCCTCTTCAACCATCCGGAAGGTATTCT
CTCATCCACTCTGTCAAAAAGCAATTTCTCCCCCAACTCTCGGGTGCTTA
TTTGGCGCCATCGTTGGCGTCACCCCTGTTCTCCGCTCCCTCTTCTTCGG
TCCTGCTGCCCCTCTTGCTTCTCTCTTTGATGCTTTACGTACCATGGGCT
CGGCCTACCTCCCTACCGTCCTCCTCGTCCTTGCTGGGTCTCTGGCAAAG
ATGAGGACGCCCACCATGAGCATGACCATGGAGCTGTGCCTGGGCGCGGT
CGCGGTGCTGGTGGCGATGGCATTCGTGCCGGAGACAGGGCTTCGAAACT
CTGAGCCTGAAAGACACGGCCCTCTTCAAGCGCACGGCCGCCATCTGCGT
CGCCCGCTTCGTTCTGATGCCCCTCACCGCCCTGGCCTTGCTGAGGGTAG
GGACGGCAGCCGCGCTCATCCCCTCATCCGACAAGCTCTTGGCCTTCATC
CTCCTCCTCCAAGCGTGCATGCCCTGTGCCCAAAACACCGTCGTGATCTT
ACAACTTCAAAAGCGACCGGCAGCGGCTGCTTCGATGGCCACCCTCGTCT
CGCTCACTTACATCCTCGCCGTCATTCCCATGGGGTTCCTGCTCTCGGCC
GTGCTGCAGTATGTTGGACTGTAAACGCCTTCCTCCAACCCCCTTTGGGG
CCATCACCATCAACACCCTTCTCCCTCTTCCCCTTCGCAAAATCTTCCCC
ATCACTATCACGGCGGCCAGATCTGCGTCCGCTTCATCAACCTCCCGGCC
ATCCTTTCCCTACCCTTCAAACCCGTCCTTTCTCGCACCTCAATGCTGTC
TCCTTTCTATCTCACCTCCGCATCGAACCGGCCGCGTTCAAAACCTCTAC
CAATGCCGTCCTCCGCCTCGTCTCCTCCTGCTCCCTCGGTCTTTTTGCCG
CCTCTCAAGGTCTGCTGGACCAGTCCTCCCTTTCCACCCTCTCCCGCCTC
ATCTTCGCCTTCTTCCAACCCGCCCTCCTCTTCACGAATGTCGCCACCAC
CCTGGCCACCCCCTCCTCCCACGGCGCATCCCTCGCAGTGCTCCCGGTCT
TCGCCCTCCTCCAAATCCTTTTCGGCTCCCTCTACGGGAAGGGCCTCGCC
TCCTTCCTCCGCCTTGAACCCACCTCTGACGAAGGCAAGGAGCTCGCGGT
GTGTTGTGCCTTTGCCAATTCCGGACCCCTCCCCCTCCTCTTCGCCGACG
CTTTTCTCCGCCTCCACCCCACCGACCCTACCCTCTACCCACGGGCCGTG
GCTTATATCTCCTTCTATCTCGTGGCCTGGTCCCCCCTCTTCTGGACCAT
CGGTGCCACCATCCTAGGCGCTGTCAAAACTCAACCCGCCTATTCCTCTC
TTCCATCCTCTTCCTCCCTCCCGCCCTCGCCCCCGCCCACCCCCTCTTCA
ACCATCCGGAAGGTATTCTCTCATCCACTCTGTCAAAAAGCAATTTCTCC
CCCAACTCTCGGGTGCTTATTTGGCGCCATCGTTGGCGTCACCCCTGTTC
TCCGCTCCCTCTTCTTCGGTCCTGCTGCCCCTCTTGCTTCTCTCTTTGAT
GCTTTACGTACCATGGGCTCGGCCTACCTCCCTACCGTCCTCCTCGTCCT
TGCTGGGTCTCTGGCAAAGATGAGGACGCCCACCATGAGCATGACCATGG
AGCTGTGCCTGGGCGCGGTCGCGGTGCTGGTGGCGATGGCATTCGTGCCG
GAGACAG back to top
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