Properties
Property Name | Value |
TranscriptId | 628908 |
Track | FilteredModels2 |
ProteinId | 628822 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_6 | supercontig | scaffold_6:177136..180576 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3380 ID=mRNA_3380|Name=jgi.p|Nanoce1779_2|628822|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp GCGTTCAAACTGCTTCAATCCAGAAACGCCTTCATCAAACCCCTTTACCT TTGATCACACTCATCGCCCCAAACTCCGCAGCCTACAGATCCCTGGCCAT GGCTTCGCCACCACTGAGCCAGCAGCAGCAGTGGCATTTGTTTGCCAAAC GCAACTCCCCACCTCCCGCACCGCCCTCATCCGCCCAACAGCCTCCTCAT CAACACTGGTCCTTTCCCCGTACGCGCCGTGATGATTCCGACAGCGAGCC CAACGAAGCCCCACCCCGAGCACCCATCCTACTCGAAGGTTACCTGAAAA AAAAGGGGGCGAGGGTACACATGTGGAGCTCCCGCTACGCGATGCTGCGT GGCAATAAGCTCATTCTGGTTCGAGGGAAGAAGGAGGAGATGGAAGCGGC GGCAGCGGCAGCTGCGGCTTTCGCTGCTACTGCTAGCGCTAGTTTTCGGG CAGAACACAACCTCCACCCCGGCCCACCTACACGTGAGTTTATCTTAATG TCAGGTTCATACGTGAGTGACGTGCGCGAGCTGCCAAACGCGGCGGGGAA AGGGAAGAGTCTTTGGATGTTTCGGTTGCACTGGCCTGAGGGTGTGAAGG GCTATGGATTAGGAGCAAGAGCGCTAAGCAAGGGGGTGTTGCCCTCTCCT GTGAATCGAAGAGCAAAATCAGATGGAGAAGACCAGGAGGAGGAAGAGGA TGATTATGACGAGTACATTGACGCAAGCTATCGTGGCGGTGCTGGCCGTG TCCCCTCTCGCCCTATCACTCCCTCTGTTGCTGGCACCAGCACCACAGCA GCAGCAGCAGCAGCAGAAGAGGGAGGAGGAGGAAGAGGAGAAGAAAAAAA AGGAGCCACGCTGCAGGAACTAGCGGTACAAGCAGCGCACACAGCAAAGC AGCAAAGAACCCGGGCGGCGGACATTGAGCGTGCTGAATCTCACCACCAG TCCTTGGTGACCAAAGGCGCAGGGTTCGCTGGAGTCGTCGTCGGTGGCGT CGTCATTGGTGCTCTTACGGCAGGTGTCGGCCTCCTGCCCTACCTTGGGT TAGTGGGCGCGGCGGCTGTGGCAGGGGGAGGCGCGGTGGCGTACACGGCA GCACAGGCACCCTCGGAGTCGAGGGTGGTGTTGGCCGCCGAAACGGAGGC AGAGGCACGTCGGTGGAAGGGGGCTTTGGAATTACAAATTGCCCACCCGG AGTGCCCTGTCGAGGAGGGCAGGGAGGGCGGGAAGGAGGGAGGACTGGGG ACGGTGAGAGGGACATTGCAGTCGGTGTTGTCCATTGCGCCGAGAAAAGA TTATGCAGATTACGAAGAGGATTTACCGGAGGCCCTGGTCTCTTACATCG TGGAGGTGGATCCGGGAGGGTGGGTGGGAGGGGGGGGCCGAGGGAGGGAG GGAGGGTGGTGGTGGAATATGGGAAGGGGGATTCGGGCGATGTACGCGGA TGTGGTTCTGGCCCATATATTGGATGTGAAGGAGGAAGTGGATGCGGGGA GGTTTAGAGGGAGGGATGGGGTGAGGGAGGAGGGGGGGGAAGAGGAGGGG AGGACGCCGATGAGACAATCGTTGACACAGCGGCTATATGAGAAGGCACT GGGGCCGGTGTTGTGA back to topprotein sequence of jgi.p|Nanoce1779_2|628822 >mRNA_3380-protein ID=mRNA_3380-protein|Name=jgi.p|Nanoce1779_2|628822|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp MASPPLSQQQQWHLFAKRNSPPPAPPSSAQQPPHQHWSFPRTRRDDSDSE PNEAPPRAPILLEGYLKKKGARVHMWSSRYAMLRGNKLILVRGKKEEMEA AAAAAAAFAATASASFRAEHNLHPGPPTREFILMSGSYVSDVRELPNAAG KGKSLWMFRLHWPEGVKGYGLGARALSKGVLPSPVNRRAKSDGEDQEEEE DDYDEYIDASYRGGAGRVPSRPITPSVAGTSTTAAAAAAEEGGGGRGEEK KGATLQELAVQAAHTAKQQRTRAADIERAESHHQSLVTKGAGFAGVVVGG VVIGALTAGVGLLPYLGLVGAAAVAGGGAVAYTAAQAPSESRVVLAAETE AEARRWKGALELQIAHPECPVEEGREGGKEGGLGTVRGTLQSVLSIAPRK DYADYEEDLPEALVSYIVEVDPGGWVGGGGRGREGGWWWNMGRGIRAMYA DVVLAHILDVKEEVDAGRFRGRDGVREEGGEEEGRTPMRQSLTQRLYEKA LGPVL* back to topmRNA from alignment at scaffold_6:177136..180576+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3380 ID=mRNA_3380|Name=jgi.p|Nanoce1779_2|628822|organism=Nannochloropsis oceanica|type=mRNA|length=3441bp|location=Sequence derived from alignment at scaffold_6:177136..180576+ (Nannochloropsis oceanica) GCGTTCAAACTGCTTCAATCCAGAAACGCCTTCATCAAACCCCTTTACCT
TTGATCACACTCATCGCCCCAAACTCCGCAGCCTACAGATCCCTGGCCAT
GGCTTCGCCACCACTGAGCCAGCAGCAGCAGTGGCATTTGTTTGCCAAAC
GCAACTCCCCACCTCCCGCACCGCCCTCATCCGCCCAACAGCCTCCTCAT
CAACACTGGTCCTTTCCCCGTACGCGCCGTGATGATTCCGACAGCGAGCC
CAACGAAGCCCCACCCCGAGCACCCATCCTACTCGAAGGTTACCTGAAAA
AAAAGGGGGCGAGGGTACACATGTGGAGCTCCCGCTACGCGATGCTGCGT
GGCAATAAGCTCATTCTGGTTCGAGGGAAGAAGGAGGAGATGGAAGCGGC
GGCAGCGGCAGCTGCGGCTTTCGCTGCTACTGCTAGCGCTAGTTTTCGGG
CAGAACACAACCTCCACCCCGGCCCACCTACACGTGAGTTTATCTTAATG
TCAGGTTCATACGTGAGTGACGTGCGCGAGCTGCCAAACGCGGCGGGGAA
AGGGAAGAGTCTTTGGATGTTTCGGTTGCACTGGCCTGAGGGTGTGAAGG
GCTATGGATTAGGAGCAAGAGCGCTAAGCAAGGGGGTGTTGCCCTCTCCT
GTGAATCGAAGAGCAAAATCAGATGGAGAAGACCAGGAGGAGGAAGAGGA
TGATTATGACGAGTACATTGACGCAAGCTATCGTGGCGGTGCTGGCCGTG
TCCCCTCTCGCCCTATCACTCCCTCTGTTGCTGGCACCAGCACCACAGCA
GCAGCAGCAGCAGCAGAAGAGGGAGGAGGAGGAAGAGGAGAAGAAAAAAA
AGGAGCCACGCTGCAGGAACTAGCGGTACAAGCAGCGCACACAGCAAAGC
AGCAAAGAACCCGGGCGGCGGACATTGAGCGTGCTGAATCTCACCACCAG
TCCTTGGTGACCAAAGGCGCAGGGTTCGCTGGAGTCGTCGTCGGTGGCGT
CGTCATTGGTGCTCTTACGGCAGGTGTCGGCCTCCTGCCCTACCTTGGGT
TAGTGGGCGCGGCGGCTGTGGCAGGGGGAGGCGCGGTGGCGTACACGGCA
GCACAGGCACCCTCGGAGTCGAGGGTGGTGTTGGCCGCCGAAACGGAGGC
AGAGGCACGTCGGTGGAAGGGGGCTTTGGAATTACAAATTGCCGTATGTG
AGGGAAGACGGCCACCACCACCGCCGGAGATCGATCTGTTGGGGATTGAC
GAACTGATTCGATCGACGGCTTGGAGGGCGGTAAGGGTACTAGAGGGAGT
GCGGGTGCTGGAGGAGGAGGGAGGGGGCAGGGAGGGAGGGAGGAGGGGGA
AAAGCAAAGGACAGGTGTTATGTAGGAAAGTCCAGGTGATGATCGAGGCG
ACTCCGATTGAGGTTTTTATGGCGTGTATGGCGACTGAAGGGCCATATCG
TCCCCCTTCGGTCCTTCCCTCCATCCCTCCCTCCGCATTCTCCTCTACTC
CTCTTCCTCCTTCCATCACTACCGCTGCTACCACCGCCGACCATTCCTCA
CTTCCTTCTCCTCCTCCTCCTCCTCCTCCTCCCTTCATGCGTCGCATCGC
CTCCTCCTTCACCACCATCCAACGTTTGGACGACCACACCGACATCCTCC
ACATCCGCCTCCGCCCTCCCTCCCTCCCCTCCACCCCCCTTACCCCCCCC
TTCCTCCGCCCCATCCTTCGCTCTTTCCTCCATCGTTTCCTCGCCCCCCG
TGATTTCTGCGTCCTGCGGTACTGGCGACTGGACGATGATGGCGCCTACA
TAATCTGTCTGGCCTCGGTCGAGCACCCGGAGTGCCCTGTCGAGGAGGGC
AGGGAGGGCGGGAAGGAGGGAGGACTGGGGACGGTGAGAGGGACATTGCA
GTCGGTGTTGTCCATTGCGCCGAGAAAAGATTATGCAGATTACGAAGAGG
ATTTACCGGAGGCCCTGGTCTCTTACATCGTGGAGGTGGATCCGGGAGGG
TGGGTGGGAGGGGGGGGCCGAGGGAGGGAGGGAGGGTGGTGGTGGAATAT
GGGAAGGGGGATTCGGGCGATGTACGCGGATGTGGTTCTGGCCCATATAT
TGGATGTGAAGGAGGAAGTGGATGCGGGGAGGTTTAGAGGGAGGGATGGG
GTGAGGGAGGAGGGGGGGGAAGAGGAGGGGAGGACGCCGATGAGACAATC
GTTGACACAGCGGCTATATGAGAAGGCACTGGGGCCGGTGAGGACTTCGA
CTTCCACGAAGAAGGGCAAGAAGAAAAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGCAGCGGTAGCGGTGATGGGAGTATGCGTCAGCGGAAGAGGAT
GCTCTCTCCCATGGGCGAACGCGCCGAGGAGGAAGAGGAGGAGGACGAGG
GAGGGCGGGAGGGCGGGAAGGGACAACAGCGGACGACGACCAGTGTTACA
GCAGAGGCAGCGGCGCTTCGCAATGCTTTGGCAGCCAAGGAATTTGAGGT
TCATCGGCTGGAGAGGGAGATAGGGCGGGGGGGAGGGACAGCTATGGGCG
TTGGAGGGGGAGCAGTCCTGACCACTGGGGGCGCGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGCTTGTTGGATACAAAGGACCGGTCGTTGGAGCTCTT
TAGGAGGCTGCAGGAGCAAGTTAACGAGGTTGAAAGGCTCAAAAGGCGAT
ACAGGAGCTTGACTGGTTTGGAGTACGGACTGCCCTTCCGTGCATCCGCC
ACGGGAGCTGCCTCCCTCCCTGCCTGCCTCCCTCCCTCCCTTCCCGCCGC
TAGCGCGACGGTGCATGCTGGTAGTGGTGGTGGTGATGGGGCTGGGAAGA
CGAGTCAGTCCTCAACCTCCTTCTTGTCCTCATCCTCGTCCTCGTCCTCG
TCCTCGTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCGGGGA
CGTCAAGCGCAGCCTGACCCCTTCGCGAGAGCAGCAGCAGCGACAGCAGC
AGCCACAGCATCGGTTGCCTACCTCTCCTTTGTCCGCCGCAAGAAAGGCG
CTGATGCACCGCAGTGGTGGTAGCAGCAGCCCGCGTAAGGGAGGGAAAAG
TGGGGCAAAGAGGGGGGAAGGACAGAGGGGGGGAAGGAAGAGGAAGGATG
GGGGGAGGGAGGAGGAGTTAAAAGAGGAAGAAGAGGAGGAGAAAGGCGCT
TACGATTGGAATGAGGGTGTGCCGGATCACTGGACCTCAGCAGCGACGAC
GAGGAGGAGGGAGGAGGGGAGGAAGGGAGGGATGGTTTCCGTGCTGGCTG
CGGCGTTGATGGGGGAGGGGGAGGGAGGGGGGGGAGGGAGGGAATGTGTT
GGAGGAAGTGGTGGTAGGGACATTTGTGGGGTTGCTGATGTTTTGCGCCC
TACTTTTTCTCTCGCTCTCCTTGCGGGCGCAGGTGTTGTGA back to topCoding sequence (CDS) from alignment at scaffold_6:177136..180576+ >mRNA_3380 ID=mRNA_3380|Name=jgi.p|Nanoce1779_2|628822|organism=Nannochloropsis oceanica|type=CDS|length=4554bp|location=Sequence derived from alignment at scaffold_6:177136..180576+ (Nannochloropsis oceanica) ATGGCTTCGCCACCACTGAGCCAGCAGCAGCAGTGGCATTTGTTTGCCAA ACGCAACTCCCCACCTCCCGCACCGCCCTCATCCGCCCAACAGCCTCCTC ATCAACACTGGTCCTTTCCCCGTACGCGCCGTGATGATTCCGACAGCGAG CCCAACGAAGCCCCACCCCGAGCACCCATCCTACTCGAAGGTTACCTGAA AAAAAAGGGGGCGAGGGTACACATGTGGAGCTCCCGCTACGCGATGCTGC GTGGCAATAAGCTCATTCTGGTTCGAGGGAAGAAGGAGGAGATGGAAGCG GCGGCAGCGGCAGCTGCGGCTTTCGCTGCTACTGCTAGCGCTAGTTTTCG GGCAGAACACAACCTCCACCCCGGCCCACCTACACGTGAGTTTATCTTAA TGTCAGGTTCATACGTGAGTGACGTGCGCGAGCTGCCAAACGCGGCGGGG AAAGGGAAGAGTCTTTGGATGTTTCGGTTGCACTGGCCTGAGGGTGTGAA GGGCTATGGATTAGGAGCAAGAGCGCTAAGCAAGGGGGTGTTGCCCTCTC CTGTGAATCGAAGAGCAAAATCAGATGGAGAAGACCAGGAGGAGGAAGAG GATGATTATGACGAGTACATTGACGCAAGCTATCGTGGCGGTGCTGGCCG TGTCCCCTCTCGCCCTATCACTCCCTCTGTTGCTGGCACCAGCACCACAG CAGCAGCAGCAGCAGCAGAAGAGGGAGGAGGAGGAAGAGGAGAAGAAAAA AAAGGAGCCACGCTGCAGGAACTAGCGGTACAAGCAGCGCACACAGCAAA GCAGCAAAGAACCCGGGCGGCGGACATTGAGCGTGCTGAATCTCACCACC AGTCCTTGGTGACCAAAGGCGCAGGGTTCGCTGGAGTCGTCGTCGGTGGC GTCGTCATTGGTGCTCTTACGGCAGGTGTCGGCCTCCTGCCCTACCTTGG GTTAGTGGGCGCGGCGGCTGTGGCAGGGGGAGGCGCGGTGGCGTACACGG CAGCACAGGCACCCTCGGAGTCGAGGGTGGTGTTGGCCGCCGAAACGGAG GCAGAGGCACGTCGGTGGAAGGGGGCTTTGGAATTACAAATTGCCCACCC GGAGTGCCCTGTCGAGGAGGGCAGGGAGGGCGGGAAGGAGGGAGGACTGG GGACGGTGAGAGGGACATTGCAGTCGGTGTTGTCCATTGCGCCGAGAAAA GATTATGCAGATTACGAAGAGGATTTACCGGAGGCCCTGGTCTCTTACAT CGTGGAGGTGGATCCGGGAGGGTGGGTGGGAGGGGGGGGCCGAGGGAGGG AGGGAGGGTGGTGGTGGAATATGGGAAGGGGGATTCGGGCGATGTACGCG GATGTGGTTCTGGCCCATATATTGGATGTGAAGGAGGAAGTGGATGCGGG GAGGTTTAGAGGGAGGGATGGGGTGAGGGAGGAGGGGGGGGAAGAGGAGG GGAGGACGCCGATGAGACAATCGTTGACACAGCGGCTATATGAGAAGGCA CTGGGGCCGGTGTTGTGAATGGCTTCGCCACCACTGAGCCAGCAGCAGCA GTGGCATTTGTTTGCCAAACGCAACTCCCCACCTCCCGCACCGCCCTCAT CCGCCCAACAGCCTCCTCATCAACACTGGTCCTTTCCCCGTACGCGCCGT GATGATTCCGACAGCGAGCCCAACGAAGCCCCACCCCGAGCACCCATCCT ACTCGAAGGTTACCTGAAAAAAAAGGGGGCGAGGGTACACATGTGGAGCT CCCGCTACGCGATGCTGCGTGGCAATAAGCTCATTCTGGTTCGAGGGAAG AAGGAGGAGATGGAAGCGGCGGCAGCGGCAGCTGCGGCTTTCGCTGCTAC TGCTAGCGCTAGTTTTCGGGCAGAACACAACCTCCACCCCGGCCCACCTA CACGTGAGTTTATCTTAATGTCAGGTTCATACGTGAGTGACGTGCGCGAG CTGCCAAACGCGGCGGGGAAAGGGAAGAGTCTTTGGATGTTTCGGTTGCA CTGGCCTGAGGGTGTGAAGGGCTATGGATTAGGAGCAAGAGCGCTAAGCA AGGGGGTGTTGCCCTCTCCTGTGAATCGAAGAGCAAAATCAGATGGAGAA GACCAGGAGGAGGAAGAGGATGATTATGACGAGTACATTGACGCAAGCTA TCGTGGCGGTGCTGGCCGTGTCCCCTCTCGCCCTATCACTCCCTCTGTTG CTGGCACCAGCACCACAGCAGCAGCAGCAGCAGCAGAAGAGGGAGGAGGA GGAAGAGGAGAAGAAAAAAAAGGAGCCACGCTGCAGGAACTAGCGGTACA AGCAGCGCACACAGCAAAGCAGCAAAGAACCCGGGCGGCGGACATTGAGC GTGCTGAATCTCACCACCAGTCCTTGGTGACCAAAGGCGCAGGGTTCGCT GGAGTCGTCGTCGGTGGCGTCGTCATTGGTGCTCTTACGGCAGGTGTCGG CCTCCTGCCCTACCTTGGGTTAGTGGGCGCGGCGGCTGTGGCAGGGGGAG GCGCGGTGGCGTACACGGCAGCACAGGCACCCTCGGAGTCGAGGGTGGTG TTGGCCGCCGAAACGGAGGCAGAGGCACGTCGGTGGAAGGGGGCTTTGGA ATTACAAATTGCCCACCCGGAGTGCCCTGTCGAGGAGGGCAGGGAGGGCG GGAAGGAGGGAGGACTGGGGACGGTGAGAGGGACATTGCAGTCGGTGTTG TCCATTGCGCCGAGAAAAGATTATGCAGATTACGAAGAGGATTTACCGGA GGCCCTGGTCTCTTACATCGTGGAGGTGGATCCGGGAGGGTGGGTGGGAG GGGGGGGCCGAGGGAGGGAGGGAGGGTGGTGGTGGAATATGGGAAGGGGG ATTCGGGCGATGTACGCGGATGTGGTTCTGGCCCATATATTGGATGTGAA GGAGGAAGTGGATGCGGGGAGGTTTAGAGGGAGGGATGGGGTGAGGGAGG AGGGGGGGGAAGAGGAGGGGAGGACGCCGATGAGACAATCGTTGACACAG CGGCTATATGAGAAGGCACTGGGGCCGGTGTTGTGAATGGCTTCGCCACC ACTGAGCCAGCAGCAGCAGTGGCATTTGTTTGCCAAACGCAACTCCCCAC CTCCCGCACCGCCCTCATCCGCCCAACAGCCTCCTCATCAACACTGGTCC TTTCCCCGTACGCGCCGTGATGATTCCGACAGCGAGCCCAACGAAGCCCC ACCCCGAGCACCCATCCTACTCGAAGGTTACCTGAAAAAAAAGGGGGCGA GGGTACACATGTGGAGCTCCCGCTACGCGATGCTGCGTGGCAATAAGCTC ATTCTGGTTCGAGGGAAGAAGGAGGAGATGGAAGCGGCGGCAGCGGCAGC TGCGGCTTTCGCTGCTACTGCTAGCGCTAGTTTTCGGGCAGAACACAACC TCCACCCCGGCCCACCTACACGTGAGTTTATCTTAATGTCAGGTTCATAC GTGAGTGACGTGCGCGAGCTGCCAAACGCGGCGGGGAAAGGGAAGAGTCT TTGGATGTTTCGGTTGCACTGGCCTGAGGGTGTGAAGGGCTATGGATTAG GAGCAAGAGCGCTAAGCAAGGGGGTGTTGCCCTCTCCTGTGAATCGAAGA GCAAAATCAGATGGAGAAGACCAGGAGGAGGAAGAGGATGATTATGACGA GTACATTGACGCAAGCTATCGTGGCGGTGCTGGCCGTGTCCCCTCTCGCC CTATCACTCCCTCTGTTGCTGGCACCAGCACCACAGCAGCAGCAGCAGCA GCAGAAGAGGGAGGAGGAGGAAGAGGAGAAGAAAAAAAAGGAGCCACGCT GCAGGAACTAGCGGTACAAGCAGCGCACACAGCAAAGCAGCAAAGAACCC GGGCGGCGGACATTGAGCGTGCTGAATCTCACCACCAGTCCTTGGTGACC AAAGGCGCAGGGTTCGCTGGAGTCGTCGTCGGTGGCGTCGTCATTGGTGC TCTTACGGCAGGTGTCGGCCTCCTGCCCTACCTTGGGTTAGTGGGCGCGG CGGCTGTGGCAGGGGGAGGCGCGGTGGCGTACACGGCAGCACAGGCACCC TCGGAGTCGAGGGTGGTGTTGGCCGCCGAAACGGAGGCAGAGGCACGTCG GTGGAAGGGGGCTTTGGAATTACAAATTGCCCACCCGGAGTGCCCTGTCG AGGAGGGCAGGGAGGGCGGGAAGGAGGGAGGACTGGGGACGGTGAGAGGG ACATTGCAGTCGGTGTTGTCCATTGCGCCGAGAAAAGATTATGCAGATTA CGAAGAGGATTTACCGGAGGCCCTGGTCTCTTACATCGTGGAGGTGGATC CGGGAGGGTGGGTGGGAGGGGGGGGCCGAGGGAGGGAGGGAGGGTGGTGG TGGAATATGGGAAGGGGGATTCGGGCGATGTACGCGGATGTGGTTCTGGC CCATATATTGGATGTGAAGGAGGAAGTGGATGCGGGGAGGTTTAGAGGGA GGGATGGGGTGAGGGAGGAGGGGGGGGAAGAGGAGGGGAGGACGCCGATG AGACAATCGTTGACACAGCGGCTATATGAGAAGGCACTGGGGCCGGTGTT GTGA back to top
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