jgi.p|Nanoce1779_2|577035, mRNA_338 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577035
Unique Name	mRNA_338
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2051
Alignment location	scaffold_3:831420..833772 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577121
Track	FilteredModels2
ProteinId	577035

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:831420..833772 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577035	gene_338	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577035	mRNA_338-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_338	CDS_338	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:831420..833772+
coding sequence from alignment at scaffold_3:831420..833772+

mRNA sequence

>mRNA_338 ID=mRNA_338|Name=jgi.p|Nanoce1779_2|577035|organism=Nannochloropsis oceanica|type=mRNA|length=2051bp
ACAGAAGATATACAAGAGATTGGCCGCGAGGTGCTGGACGCGGGTGCTGG
CTGCTGGAAGGATGACCACGCCATTCCTACAGATCTGAAAAAGCGAGGAA
GGCAAAAAAACCCATTATTGAAGGCGGGCTCAGGAGCACGCCGCGGCAGC
GAGTAATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCAC
GGGCATAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAG
CATCAAATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGG
AGAGGGAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCA
GAAGAGAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTT
GGGCTCTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAG
GCGTGCGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGT
CTCGACAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTC
TCAACGGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGA
TCGCGCTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTAC
CGAGTGTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGGC
GGCCGGGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGATA
AGCACGTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACCT
CTTCTAGGCTATCACTCATACGCTGATTTTGTCTCGGCTGGAGCAGGCTC
ACCAGGAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAGG
AGGGAGGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTACG
AGCAGTAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACAG
CAGTAGTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCGA
CGTCGAGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGCG
GCCAGAAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTAT
CGGCTTGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTGAGA
AATGAAGGAACGTGGGAGAGGTGTAAGGGTACGTATGAAGGTCTGCTCTG
TGTGTATTTTTTAAAATCCCTCACGGCCCTCTTTCTTTCCTTTCATTCCA
ACCAATACAGGCGTGAGCATTCAACAGCTGGAAAAAGAGCGTGCAGTCAT
TATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGATGG
GTGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAGCCT
TTTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACCGCG
GCATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCCTTT
CGGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTTAAA
CCTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAGAAA
CAATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTAAGA
CTAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGGAGC
GTTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCTTGC
TTCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCCCAC
GCCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTGTCA
GTGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGCTAA
CGGACAAAGCCGAGCAGTTTAGCGACCTTTTTGTGAATAGAAGACAATTG
AAATATACACATAGTATATAAGCAAAGTAGGCAACAAACGTATGGGCATG
G

protein sequence of jgi.p|Nanoce1779_2|577035

>mRNA_338-protein ID=mRNA_338-protein|Name=jgi.p|Nanoce1779_2|577035|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MGDQGPGHDPHKREHGHKKGSFLNKFFSRQGSIKFSGGGHGSCGAGNAER
EEAAEGRASAPMRRSEENPYHYNRFHLPISPLGSSAPSFPSLRYLAGAGV
RAAEGVRRGGDKGGGLDRGGGRRGRGEGKLNSQRLLNPLTPAAVAALKIA
LDYLGSTALGEEGLYRVSGNKLDVDRLKVVLAAGLLSSSDILQSHYPDKH
VIAGAIKKVLQEHEPLLGYHSYADFVSAGAGSPGRLNEDEIVLEEEGEEG
GPRRSQISELSNSCTSSSSSGSSSCRLSGGNSSSKEGRYRDLVLQLRPTS
RELLGHLLRHLRMVAARSEENKMTAENLAVTIGLNLLRKSESVAGKFEK*

mRNA from alignment at scaffold_3:831420..833772+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_338 ID=mRNA_338|Name=jgi.p|Nanoce1779_2|577035|organism=Nannochloropsis oceanica|type=mRNA|length=2353bp|location=Sequence derived from alignment at scaffold_3:831420..833772+ (Nannochloropsis oceanica)
ACAGAAGATATACAAGAGATTGGCCGCGAGGTGCTGGACGCGGGTGCTGG
CTGCTGGAAGGATGACCACGCCATTCCTACAGATCTGAAAAAGCGAGGAA
GGCAAAAAAACCCATTATTGAAGGCGGGCTCAGGAGCACGCCGCGGCAGC
GAGTAATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCAC
GGGCATAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAG
CATCAAATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGG
AGAGGGAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCA
GAAGAGAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTT
GGGCTCTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAG
GCGTGCGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGT
CTCGACAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTC
TCAACGGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGA
TCGCGCTGGATTACTTGGGGTTAGTGTGTGTTTGAAGGGCATCGGTGGAA
GGATGAGGTCGGAGGGAAAGAGAGAGGTTAAGATTGATGGTCTAGCAACC
TCATCTTCCGTATCTCGTTTCTCACTTAATCTCTTGTATGATCGTAATGT
TGTATGTTTTTATTGAATCTCACCATCCATTTCTCTTCACCACCACAGAT
CAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGTGTCGGGCAATAAACTC
GACGTTGACAGGCTAAAGGTCGTACTGGCGGCCGGGCTACTGTCCTCGTC
CGATATTCTTCAATCCCATTATCCTGATAAGCACGTCATTGCCGGGGCTA
TCAAGAAGGTGGGAGGAAGGTGGCTGGGTCTGACCTACCCCCTCTCTCGC
CAACCCCCCTCACCCTACGCTCTGTGCTCTTCCCTCCTCAACCTCGCTCT
ATGTGCCCACACTCTCTCATTCCTACTCCAGGTATTGCAAGAACACGAAC
CTCTTCTAGGCTATCACTCATACGCTGATTTTGTCTCGGCTGGAGCAGGC
TCACCAGGAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGA
GGAGGGAGGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTA
CGAGCAGTAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAAC
AGCAGTAGTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCC
GACGTCGAGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGG
CGGCCAGAAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACT
ATCGGCTTGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTGA
GAAATGAAGGAACGTGGGAGAGGTGTAAGGGTACGTATGAAGGTCTGCTC
TGTGTGTATTTTTTAAAATCCCTCACGGCCCTCTTTCTTTCCTTTCATTC
CAACCAATACAGGCGTGAGCATTCAACAGCTGGAAAAAGAGCGTGCAGTC
ATTATGGACTTGATTGTCCTCTGCCCTCTCCTCTTCCCTTCGGACGGGAT
GGGTGGAAACAAAAACGGCAACAAAAACAAAACACACCCTCCACTCAAGC
CTTTTCATGCGCCTCGAGTCATCAAATCTGCCCCCGCAAGTCGCACACCG
CGGCATTTTTTCCCTTTGACTGATGAAGTAACACGGAAAACAGCCCCCCT
TTCGGCGACGGGAGGTGGGGATGATGATAGGGACGTCCCTGTCTTCCTTA
AACCTCCCCTCAAGCCGCTGAAGCGGCTTCACGAGGGCACAGGCAGCAGA
AACAATAGCACGACACATGCAGCCACCACCACCATCAACAGCCATCCTAA
GACTAGTGACTGCACGGGAAGCGAAAGCAACAGCAGCGTTGATGACCGGA
GCGTTTGCAGCGCACTTCCGCGCGTCGCCGAGGCACGTCCAAACCCTCTT
GCTTCTACCCTACCCTTCCGGCCGCCGGACAAGCCTGAACGGACCTCCCC
ACGCCGCGCCTCTTGGAATGAGTCTTCCGCTTTTTCTTTGCTTGCCTTGT
CAGTGTCATCGTGCAGCTTGTCGGCGGAGGGGAATGGGGAAACAGTGGCT
AACGGACAAAGCCGAGCAGTTTAGCGACCTTTTTGTGAATAGAAGACAAT
TGAAATATACACATAGTATATAAGCAAAGTAGGCAACAAACGTATGGGCA
TGG

Coding sequence (CDS) from alignment at scaffold_3:831420..833772+

>mRNA_338 ID=mRNA_338|Name=jgi.p|Nanoce1779_2|577035|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_3:831420..833772+ (Nannochloropsis oceanica)
ATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCACGGGCA
TAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAGCATCA
AATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGGAGAGG
GAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCAGAAGA
GAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTTGGGCT
CTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAGGCGTG
CGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGTCTCGA
CAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTCTCAAC
GGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGATCGCG
CTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGT
GTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGGCGGCCG
GGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGATAAGCAC
GTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACCTCTTCT
AGGCTATCACTCATACGCTGATTTTGTCTCGGCTGGAGCAGGCTCACCAG
GAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAGGAGGGA
GGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTACGAGCAG
TAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACAGCAGTA
GTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCGACGTCG
AGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGCGGCCAG
AAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTATCGGCT
TGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTGAGAAATGA
ATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCACGGGCA
TAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAGCATCA
AATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGGAGAGG
GAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCAGAAGA
GAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTTGGGCT
CTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAGGCGTG
CGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGTCTCGA
CAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTCTCAAC
GGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGATCGCG
CTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGT
GTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGGCGGCCG
GGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGATAAGCAC
GTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACCTCTTCT
AGGCTATCACTCATACGCTGATTTTGTCTCGGCTGGAGCAGGCTCACCAG
GAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAGGAGGGA
GGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTACGAGCAG
TAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACAGCAGTA
GTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCGACGTCG
AGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGCGGCCAG
AAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTATCGGCT
TGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTGAGAAATGA
ATGGGAGACCAAGGACCCGGCCACGACCCACACAAGCGTGAGCACGGGCA
TAAGAAGGGTAGCTTCCTGAACAAGTTTTTTTCTCGCCAGGGGAGCATCA
AATTCAGTGGTGGAGGACATGGCAGCTGCGGGGCTGGAAATGCGGAGAGG
GAGGAGGCGGCGGAAGGCCGGGCCTCGGCCCCCATGCGTCGGTCAGAAGA
GAATCCATACCATTATAATCGTTTTCACCTCCCCATTTCTCCTTTGGGCT
CTTCCGCGCCCTCCTTTCCTAGCTTGCGGTATCTAGCAGGGGCAGGCGTG
CGGGCAGCCGAAGGCGTCAGGCGGGGAGGAGACAAGGGTGGTGGTCTCGA
CAGAGGAGGAGGAAGAAGAGGTCGAGGCGAAGGAAAGCTGAATTCTCAAC
GGCTCTTAAATCCTTTGACACCTGCAGCAGTGGCTGCTTTGAAGATCGCG
CTGGATTACTTGGGATCAACGGCGTTGGGGGAGGAAGGTCTCTACCGAGT
GTCGGGCAATAAACTCGACGTTGACAGGCTAAAGGTCGTACTGGCGGCCG
GGCTACTGTCCTCGTCCGATATTCTTCAATCCCATTATCCTGATAAGCAC
GTCATTGCCGGGGCTATCAAGAAGGTATTGCAAGAACACGAACCTCTTCT
AGGCTATCACTCATACGCTGATTTTGTCTCGGCTGGAGCAGGCTCACCAG
GAAGGCTTAACGAGGATGAGATAGTGTTGGAGGAAGAAGGGGAGGAGGGA
GGGCCAAGAAGATCGCAAATTAGCGAACTCAGCAACAGCTGTACGAGCAG
TAGTAGCAGTGGAAGCAGCAGTTGCCGTCTAAGTGGTGGCAACAGCAGTA
GTAAGGAAGGGAGGTATCGTGATTTGGTGCTGCAGTTAAGGCCGACGTCG
AGGGAGTTGCTCGGACACCTATTAAGGCATTTGCGGATGGTGGCGGCCAG
AAGTGAGGAGAACAAAATGACGGCCGAGAATCTAGCGGTCACTATCGGCT
TGAACCTGTTGAGGAAGTCTGAGTCGGTTGCAGGTAAGTTTGAGAAATGA

Synonyms

Publications