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Properties
| Property Name | Value |
|---|
| TranscriptId | 539269 |
| Track | FilteredModels2 |
| ProteinId | 539183 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:175976..177158 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3379 ID=mRNA_3379|Name=jgi.p|Nanoce1779_2|539183|organism=Nannochloropsis oceanica|type=mRNA|length=1087bp
CTGGATTGAAGCAGTTTGAACGCGAGAAGCAACAGACGACAGCACCATCT
CCAATCATCCCACCACACCACCACCTCAAACAGCCTATAGTACTCTATAA
GGGTCCTATGAAGACACGATGATACAGAGAACGATGGTGGCAGGGCGACG
CCGCCGCTGAAGCTCTCTACATGTCCACCATGTCTTCATCCCAGCTGGAG
CGGGATGAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGCACCACCACCA
GCACGAGCAGCACGCTGAGTGGTCGGCCATACAAGCCCGTCTCCAAGCTG
CTATTATCGAGACTGACACCTTTGTCTGGGAAGACTTAAAGCTGATAGGT
GGTCTAGACTTGAGCTTCCTCCCTTCAGAGAACAAAAACGAGGAGAGCAA
CGAGGCCGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAGCTGGAAGTCC
TCTATGAAAGCTTTTTACCCACCAAATTAAACTCCCCCTATATTTCCGGC
TTCCTTGCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAGTCTTAGAACT
ACGTCAAAAGCACCCAGAATTGATGCCACAGCTTCTAATAGTGGACGGCA
ATGGAGTGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCACGTGGGTTTG
AAGACAGGTTTAGCTACCTTGGGTTGTGCAAAGACATTTCTGCATGTCGA
TGGATTGGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGAGGAGGAGGGG
GAGAGAGAGAGGGGGAAGAGGTCTTAACATTAATCGGTGCCTCGGGTCGG
ACTTTCGGCATGGCATTTTGTCCGCCGGGTATCACTAATCCTCTCTACAT
CTCTGTCGGTACCGGCATCTCTCTCCCCTTTGCCATGCGCGTCGTCCAAG
CCTGTTGCAAGCATCGCGTGCCAGAACCAGTACGACAGGCAGACCTCCGC
TCCCGCGCGTGGATAAGAGGGCGAACGCAGGGCTAGGAGAAAAAGATATA
GAAACCCAAATATCAGTGTGTATTTTAAAATGAAAATAAAAATTTCAAAT
AATAATGTGCCGAAAACAGCTGTGTTCTAATTTGAGC back to topprotein sequence of jgi.p|Nanoce1779_2|539183 >mRNA_3379-protein ID=mRNA_3379-protein|Name=jgi.p|Nanoce1779_2|539183|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MSTMSSSQLERDERGEVELEAQTHHHQHEQHAEWSAIQARLQAAIIETDT
FVWEDLKLIGGLDLSFLPSENKNEESNEAVACLVILSFPQLEVLYESFLP
TKLNSPYISGFLAFREAPPMVALVLELRQKHPELMPQLLIVDGNGVLHPR
GCGLASHVGLKTGLATLGCAKTFLHVDGLETKGVREVMRGGGGGEREGEE
VLTLIGASGRTFGMAFCPPGITNPLYISVGTGISLPFAMRVVQACCKHRV
PEPVRQADLRSRAWIRGRTQG* back to topmRNA from alignment at scaffold_6:175976..177158- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3379 ID=mRNA_3379|Name=jgi.p|Nanoce1779_2|539183|organism=Nannochloropsis oceanica|type=mRNA|length=1183bp|location=Sequence derived from alignment at scaffold_6:175976..177158- (Nannochloropsis oceanica)
CTGGATTGAAGCAGTTTGAACGCGAGAAGCAACAGACGACAGCACCATCT
CCAATCATCCCACCACACCACCACCTCAAACAGCCTATAGTACTCTATAA
GGGTCCTATGAAGACACGATGATACAGAGAACGATGGTGGCAGGGCGACG
CCGCCGCTGAAGCTCTCTACATGTCCACCATGTCTTCATCCCAGCTGGAG
CGGGATGAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGCACCACCACCA
GCACGAGCAGCACGCTGAGTGGTCGGCCATACAAGCCCGTCTCCAAGCTG
CTATTATCGAGACTGACACCTTTGTCTGGGAAGACTTAAAGCTGATAGGT
GGTCTAGACTTGAGCTTCCTCCCTTCAGAGAACAAAAACGAGGAGAGCAA
CGAGGCCGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAGCTGGAAGTCC
TCTATGAAAGCTTTTTACCCACCAAATTAAACTCCCCCTATATTTCCGGC
TTCCTTGCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAGTCTTAGAACT
ACGTCAAAAGCACCCAGAATTGATGCCACAGCTTCTAATAGTGGACGGCA
ATGGAGTGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCACGTGGGTTTG
AAGACAGGTTTAGCTACCTTGGGTTGTGCAAAGACATTTCTGCATGTCGA
TGGATTGGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGAGGAGGAGGGG
GAGAGAGAGAGGGGGAAGAGGTGTTGATGGTGGATGGAGGCTTGGGAAAA
TGGAGAAAGGTGGAAGAGGGCAAGTTGGAAGACACCTATGTCAATGGCAG
TACCAGTTGCAGTAGGAGCTTAACATTAATCGGTGCCTCGGGTCGGACTT
TCGGCATGGCATTTTGTCCGCCGGGTATCACTAATCCTCTCTACATCTCT
GTCGGTACCGGCATCTCTCTCCCCTTTGCCATGCGCGTCGTCCAAGCCTG
TTGCAAGCATCGCGTGCCAGAACCAGTACGACAGGCAGACCTCCGCTCCC
GCGCGTGGATAAGAGGGCGAACGCAGGGCTAGGAGAAAAAGATATAGAAA
CCCAAATATCAGTGTGTATTTTAAAATGAAAATAAAAATTTCAAATAATA
ATGTGCCGAAAACAGCTGTGTTCTAATTTGAGC back to topCoding sequence (CDS) from alignment at scaffold_6:175976..177158- >mRNA_3379 ID=mRNA_3379|Name=jgi.p|Nanoce1779_2|539183|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at scaffold_6:175976..177158- (Nannochloropsis oceanica)
CTTAACATTAATCGGTGCCTCGGGTCGGACTTTCGGCATGGCATTTTGTC
CGCCGGGTATCACTAATCCTCTCTACATCTCTGTCGGTACCGGCATCTCT
CTCCCCTTTGCCATGCGCGTCGTCCAAGCCTGTTGCAAGCATCGCGTGCC
AGAACCAGTACGACAGGCAGACCTCCGCTCCCGCGCGTGGATAAGAGGGC
GAACGCAGGGCTAGATGTCCACCATGTCTTCATCCCAGCTGGAGCGGGAT
GAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGCACCACCACCAGCACGA
GCAGCACGCTGAGTGGTCGGCCATACAAGCCCGTCTCCAAGCTGCTATTA
TCGAGACTGACACCTTTGTCTGGGAAGACTTAAAGCTGATAGGTGGTCTA
GACTTGAGCTTCCTCCCTTCAGAGAACAAAAACGAGGAGAGCAACGAGGC
CGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAGCTGGAAGTCCTCTATG
AAAGCTTTTTACCCACCAAATTAAACTCCCCCTATATTTCCGGCTTCCTT
GCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAGTCTTAGAACTACGTCA
AAAGCACCCAGAATTGATGCCACAGCTTCTAATAGTGGACGGCAATGGAG
TGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCACGTGGGTTTGAAGACA
GGTTTAGCTACCTTGGGTTGTGCAAAGACATTTCTGCATGTCGATGGATT
GGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGAGGAGGAGGGGGAGAGA
GAGAGGGGGAAGAGGTCTTAACATTAATCGGTGCCTCGGGTCGGACTTTC
GGCATGGCATTTTGTCCGCCGGGTATCACTAATCCTCTCTACATCTCTGT
CGGTACCGGCATCTCTCTCCCCTTTGCCATGCGCGTCGTCCAAGCCTGTT
GCAAGCATCGCGTGCCAGAACCAGTACGACAGGCAGACCTCCGCTCCCGC
GCGTGGATAAGAGGGCGAACGCAGGGCTAGATGTCCACCATGTCTTCATC
CCAGCTGGAGCGGGATGAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGC
ACCACCACCAGCACGAGCAGCACGCTGAGTGGTCGGCCATACAAGCCCGT
CTCCAAGCTGCTATTATCGAGACTGACACCTTTGTCTGGGAAGACTTAAA
GCTGATAGGTGGTCTAGACTTGAGCTTCCTCCCTTCAGAGAACAAAAACG
AGGAGAGCAACGAGGCCGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAG
CTGGAAGTCCTCTATGAAAGCTTTTTACCCACCAAATTAAACTCCCCCTA
TATTTCCGGCTTCCTTGCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAG
TCTTAGAACTACGTCAAAAGCACCCAGAATTGATGCCACAGCTTCTAATA
GTGGACGGCAATGGAGTGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCA
CGTGGGTTTGAAGACAGGTTTAGCTACCTTGGGTTGTGCAAAGACATTTC
TGCATGTCGATGGATTGGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGA
GGAGGAGGGGGAGAGAGAGAGGGGGAAGAGGT back to top
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