jgi.p|Nanoce1779_2|552718, mRNA_3378 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552718
Unique NamemRNA_3378
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1253
Alignment locationscaffold_6:174336..175887 +

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Properties
Property NameValue
TranscriptId552804
TrackFilteredModels2
ProteinId552718
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:174336..175887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552718gene_3378Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552718mRNA_3378-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3378CDS_3378Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Nanoce1779_2|552718|organism=Nannochloropsis oceanica|type=mRNA|length=1253bp
AGCCACAACAGCTTCTCGTCAGCTCACCATCAATCTCCCCGCTCCCGTTT
ACCGGCCCAGTAGCCCCGTCGACCATCCACCACAACAAACATGCCTACCT
TCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTATTCAGGAATCT
GAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACATTTTTTGGCAA
TCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCTGTTGGAAAAAA
ATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGCACAAGCCAGAT
TGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCCACGCTTTATGA
CCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGAGTACCTAGAGG
AGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCGACCCTCACGAG
CGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAGCGAACACTACC
ACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGAAGCCAACACCA
GTACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCCCCGCCTCCTCC
CCCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCCTTGGCCGAGAT
CTGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCTGCAGCACTACA
GGGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCCTCCAAGCCGCG
TATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACAGCGCAATCCTC
GGCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCCCGCGCCCTCTT
CTGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGGGATGGAAGGTG
GCGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTGGTCAGTGTCTT
GTCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATGGAGCTATAGGA
AGGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTTAGAGGGAAGCA
GTTGACGAAAGGGGGAAGGTGCTGTGTGTGGCGACACAGGAGAAGTGATG
GGTTGGGGTGCAGGTGATGAAACTTGCAGGGTTGGGAGCCAGTAATGCAG
AGAGCGACAAATAGGATGAAAAGCATACAGAAGAAAAACGGGACTTGAAA
ATGTGTAGGACGGAGAGTGGAGGAAAAGTGTGCATATATTAATTACAGCA
CAG
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protein sequence of jgi.p|Nanoce1779_2|552718

>mRNA_3378-protein ID=mRNA_3378-protein|Name=jgi.p|Nanoce1779_2|552718|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MPTFDNFEQMGRESHRIQESEVDNVLHRTDRVTFFGNRLCPYAHVAWWSL
LEKNIAFDYVHIDLGTHKPDWYKSKINPYGTVPTLYDHGKAVFESVIIAE
YLEEKFGAKGTRLLSTDPHERAAVRLLITHFRERTLPPLYRLLKAQTPAE
ANTSTRIKPNPSSPSSPASSPSAGPFFLGSTFSLAEICIFPFLQRLSIAL
QHYRGLNVLQSTHLPCLQAAYDKIQERPAWKATAQSSAFYIAVYESYANP
APSSAAGGQKSERGGWGWKVASVVSLAGATLPVVSVLSFASFLLGVGIGW
SYRKGPARTGKFVTIG*
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mRNA from alignment at scaffold_6:174336..175887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Nanoce1779_2|552718|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp|location=Sequence derived from alignment at scaffold_6:174336..175887+ (Nannochloropsis oceanica)
AGCCACAACAGCTTCTCGTCAGCTCACCATCAATCTCCCCGCTCCCGTTT
ACCGGCCCAGTAGCCCCGTCGACCATCCACCACAACAAACATGCCTACCT
TCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTATTCAGGAATCT
GAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACATTTTTTGGCAA
TCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCTGTTGGAAAAAA
ATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGCACAAGCCAGAT
TGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCCACGCTTTATGA
CCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGAGTACCTAGAGG
AGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCGACCCTCACGAG
CGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAGCGAACACTACC
ACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGAAGCCAAGTTGG
CAAAGGTAAGTCTTCAGTTTTTCAAGACTCCTTCTATTTTTCACAGTGTG
GTGTGGGGCCTCTTCCTGTTGTCTTCTTCAGGTGTCCTGCCTATGGTTTA
TCTCATTTTGGTGGTAGTCAGAGAACATATCTCAACCGTTATGATAACTT
TGCGCGGAAGGTAGCGCTGTGTGCTCTCTACCCCATTCTTCCTTCCTTTC
TGTCCTTTCCCCCCGCCGCACACACACAGGAGCTCGTCCTTGTGGAGATG
CTTGCCCTCGAGCTTCTCTACAGCAAGCGGATCCCCAACCACAGCACCAG
TACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCCCCGCCTCCTCCC
CCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCCTTGGCCGAGATC
TGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCTGCAGCACTACAG
GGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCCTCCAAGCCGCGT
ATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACAGCGCAATCCTCG
GCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCCCGCGCCCTCTTC
TGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGGGATGGAAGGTGG
CGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTGGTCAGTGTCTTG
TCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATGGAGCTATAGGAA
GGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTTAGAGGGAAGCAG
TTGACGAAAGGGGGAAGGTGCTGTGTGTGGCGACACAGGAGAAGTGATGG
GTTGGGGTGCAGGTGATGAAACTTGCAGGGTTGGGAGCCAGTAATGCAGA
GAGCGACAAATAGGATGAAAAGCATACAGAAGAAAAACGGGACTTGAAAA
TGTGTAGGACGGAGAGTGGAGGAAAAGTGTGCATATATTAATTACAGCAC
AG
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Coding sequence (CDS) from alignment at scaffold_6:174336..175887+

>mRNA_3378 ID=mRNA_3378|Name=jgi.p|Nanoce1779_2|552718|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_6:174336..175887+ (Nannochloropsis oceanica)
ATGCCTACCTTCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTAT
TCAGGAATCTGAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACAT
TTTTTGGCAATCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCTG
TTGGAAAAAAATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGCA
CAAGCCAGATTGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCCA
CGCTTTATGACCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGAG
TACCTAGAGGAGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCGA
CCCTCACGAGCGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAGC
GAACACTACCACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGAA
GCCAACACCAGTACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCCC
CGCCTCCTCCCCCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCCT
TGGCCGAGATCTGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCTG
CAGCACTACAGGGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCCT
CCAAGCCGCGTATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACAG
CGCAATCCTCGGCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCCC
GCGCCCTCTTCTGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGGG
ATGGAAGGTGGCGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTGG
TCAGTGTCTTGTCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATGG
AGCTATAGGAAGGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTTA
GATGCCTACCTTCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTA
TTCAGGAATCTGAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACA
TTTTTTGGCAATCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCT
GTTGGAAAAAAATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGC
ACAAGCCAGATTGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCC
ACGCTTTATGACCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGA
GTACCTAGAGGAGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCG
ACCCTCACGAGCGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAG
CGAACACTACCACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGA
AGCCAACACCAGTACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCC
CCGCCTCCTCCCCCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCC
TTGGCCGAGATCTGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCT
GCAGCACTACAGGGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCC
TCCAAGCCGCGTATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACA
GCGCAATCCTCGGCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCC
CGCGCCCTCTTCTGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGG
GATGGAAGGTGGCGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTG
GTCAGTGTCTTGTCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATG
GAGCTATAGGAAGGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTT
AG
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Synonyms
Publications