jgi.p|Nanoce1779_2|669367, mRNA_3376 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669367
Unique Name	mRNA_3376
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2943
Alignment location	scaffold_6:168700..172041 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669453
Track	FilteredModels2
ProteinId	669367

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:168700..172041 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669367	gene_3376	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669367	mRNA_3376-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3376	CDS_3376	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:168700..172041+
coding sequence from alignment at scaffold_6:168700..172041+

mRNA sequence

>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Nanoce1779_2|669367|organism=Nannochloropsis oceanica|type=mRNA|length=2943bp
GAAATTTCTCCCGGGCACATACACGTCTTCGAGCCTTACATGCTTACCAA
ATGTAGAGACAAGATGAAAACAACAACACCGCGAACAAAACAGACATTTC
TCGGTGACATTTCAACTTAATCTGTGTCTGGTTTCTTTGTACATGTAGGG
TTTAGGGTCACTTGTCTTAACTAGGCCTCTGCGCGATATTTTCCCTCCCG
TCCTGGCCTCCATAACTCCCTCCCGCCCCCTGGAAATGTGCACTTCAAAC
CTTCATCATTCATTGTCTTGATTGAGCAAAGGATATATTACTACTCCCCG
TCCTTAAGGTAGCCAGATTTTGCCAAGGTATTGTAGTTAAGAAGCTTGCT
AATCAGGTCCACGTGCGTGAGAACCATCCGTCGGCAGCAGTACCGCTTCA
AGCCCACCTTGTCCAGCGCCACACTGTGTTACAGGGTGAAAAGGTAAGGT
GAGAAGGACAAAAGGTTTGTGAGATAAGAGCAGCGACAAGGAGGGACATG
GTTGCATTGAGCCTCAACCATTTGACTTGTACAGTAATAGAGAGGGAGAT
GAGAGAGGGCAAGAAGGAAAGATACAAAGAATTCCATCACCCGAGTGTCG
TGCCTGACAACATCACACATAGTAATGATCCTACAGCTTTCTACTCCGGC
AAAAAATGTCACGGGAAGGAAAAGTACTTGTGAGGGAGAGCGCAACAGGC
GTATCAGGTGTTCAAAGACAACAAGGGGTGAACCCAAGTGACAAAACTAA
GGCAAAGCACGCCACTTTTCTTAACTCATCTATTCACTACCCATCTTCGC
TTCAGACACGTACCCCTCTTTGTAGTCATTCTTGAGGTACTCCACGTACA
CTTCGTACTTGTTGCCGATGACCTGGTGGAGTTGGAAAGGGAGGGAGGGG
ACAAGAAGAAAGGTGTAAGTCATAGACTTTCATCGCGTCTTCTCACGCAG
CATAGTTCAGGAGGTCTACCGTTCATGTTCTCGTGACACTCTTCTTGTCC
GCTTCGTGCCCCATGCCTTAATTCCTCCTCATTTGAACCTCCTCTTTGCC
GTCTCGCCCCCATATCTCCCAAGGCGCTTCCACACCCTCCCTTGCCTCCT
CCTCATATTCTCTGTTTACCTTGCCACACGTGAAGCAGCGCACAGGAATA
ATCATAGTGCTCTAGGTGAACTTGCGACGACCCCCCTCTTCTTGTTAATT
CCTCAGCTATCTTGAACGACCCTTTTCTCTCCGTCCTGTATGGTTGTGTA
TGGAGTGGTTTGCGCGGAGAGTACCTGGATTAGTAGATGCAGCGGGTTCG
CAGTGGACACAGCAATACAGAAGGAAGGACTTAGAATAAGCAGATACACC
GCCCCTGCTTGCCGCCCTACGAAGATGAATCGTGCGACCTCCTCATCTCC
ACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAACGGTCATGCC
CCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGAAGCACGCCC
ACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAAAACAGGCAA
ATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTTCGCTAACTG
GCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCTTTAAAAATC
CTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACAGGCAGGGTC
ACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGTACCTCGAGG
ATAATCTGGAGCATGGGGCTCCTTTGCCAGATAGAGTAAAAGAGACGTTC
CACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACCACGAGGGC
CGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGACGACGATG
AGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGA
GGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCC
AGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATCAGCATCAT
CATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
GACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCACGCGGCCTT
GCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTATGATCTGT
TAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGTTTGAGAGG
CATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGC
GGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGATGAGTAGAA
ATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATA
AAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAAGAGGAGGAGGAGG
AGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGGGGGAGGGA
TGTGGGGCGTGGGGGGGGGAGGAAATGATGTATTGGGAGGAGGAGGAGGA
GGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGG
GGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGCAATATTG
CCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTACGAGTGG
TTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGGGAAATCG
GTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGAGGGGGGG
GAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGGTTGGAG
GAGAAGAAGGGGTTGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGGGAG
GGAGGGTGTAAAAAGTTTTGGGGGCATCGCAGCACTTAGGTGA

protein sequence of jgi.p|Nanoce1779_2|669367

>mRNA_3376-protein ID=mRNA_3376-protein|Name=jgi.p|Nanoce1779_2|669367|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MPMACITSALPPLKILPAKSHTLPTHQSQAGSQEEDDDGGMIGPGYLEDN
LEHGAPLPDRVKETFHLLRELDVATRLLTTRADRLIGATDGIPQRDDDEE
EDEEEEAGKKRGRGGGKKENSVGGKGGKKAAPGGSSSRGKGKGRASASSL
DSEDEEEEEEEEEEEDDASRRATLRQFQHAALRCADEKIQLAIHVYDLLD
TQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNY
QYMQKAEGGGGGRGIKRGRGRWPDAEGRGGGGVGGSSRLTYSRGGGGGMW
GVGGGGNDVLGGGGGGGGGGGNGKGLVGSGSGGGVDPNEPIYCYCRNIAY
GEMIGCDNPSCQYEWFHYKCVGLTRQPTAGNRWLCPKCKREQGGRGGGGG
VGYSTSAAAVLDRLEEKKGLREGGREGGEGGREGVKSFGGIAALR*

mRNA from alignment at scaffold_6:168700..172041+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Nanoce1779_2|669367|organism=Nannochloropsis oceanica|type=mRNA|length=3342bp|location=Sequence derived from alignment at scaffold_6:168700..172041+ (Nannochloropsis oceanica)
GAAATTTCTCCCGGGCACATACACGTCTTCGAGCCTTACATGCTTACCAA
ATGTAGAGACAAGATGAAAACAACAACACCGCGAACAAAACAGACATTTC
TCGGTGACATTTCAACTTAATCTGTGTCTGGTTTCTTTGTACATGTAGGG
TTTAGGGTCACTTGTCTTAACTAGGCCTCTGCGCGATATTTTCCCTCCCG
TCCTGGCCTCCATAACTCCCTCCCGCCCCCTGGAAATGTGCACTTCAAAC
CTTCATCATTCATTGTCTTGATTGAGCAAAGGATATATTACTACTCCCCG
TCCTTAAGGTAGCCAGATTTTGCCAAGGTATTGTAGTTAAGAAGCTTGCT
AATCAGGTCCACGTGCGTGAGAACCATCCGTCGGCAGCAGTACCGCTTCA
AGCCCACCTTGTCCAGCGCCACACTGTGTTACAGGGTGAAAAGGTAAGGT
GAGAAGGACAAAAGGTTTGTGAGATAAGAGCAGCGACAAGGAGGGACATG
GTTGCATTGAGCCTCAACCATTTGACTTGTACAGTAATAGAGAGGGAGAT
GAGAGAGGGCAAGAAGGAAAGATACAAAGAATTCCATCACCCGAGTGTCG
TGCCTGACAACATCACACATAGTAATGATCCTACAGCTTTCTACTCCGGC
AAAAAATGTCACGGGAAGGAAAAGTACTTGTGAGGGAGAGCGCAACAGGC
GTATCAGGTGTTCAAAGACAACAAGGGGTGAACCCAAGTGACAAAACTAA
GGCAAAGCACGCCACTTTTCTTAACTCATCTATTCACTACCCATCTTCGC
TTCAGACACGTACCCCTCTTTGTAGTCATTCTTGAGGTACTCCACGTACA
CTTCGTACTTGTTGCCGATGACCTGGTGGAGTTGGAAAGGGAGGGAGGGG
ACAAGAAGAAAGGTGTAAGTCATAGACTTTCATCGCGTCTTCTCACGCAG
CATAGTTCAGGAGGTCTACCGTTCATGTTCTCGTGACACTCTTCTTGTCC
GCTTCGTGCCCCATGCCTTAATTCCTCCTCATTTGAACCTCCTCTTTGCC
GTCTCGCCCCCATATCTCCCAAGGCGCTTCCACACCCTCCCTTGCCTCCT
CCTCATATTCTCTGTTTACCTTGCCACACGTGAAGCAGCGCACAGGAATA
ATCATAGTGCTCTAGGTGAACTTGCGACGACCCCCCTCTTCTTGTTAATT
CCTCAGCTATCTTGAACGACCCTTTTCTCTCCGTCCTGTATGGTTGTGTA
TGGAGTGGTTTGCGCGGAGAGTACCTGGATTAGTAGATGCAGCGGGTTCG
CAGTGGACACAGCAATACAGAAGGAAGGACTTAGAATAAGCAGATACACC
GCCCCTGCTTGCCGCCCTACGAAGATGAATCGTGCGACCTCCTCATCTCC
ACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAACGGTCATGCC
CCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGAAGCACGCCC
ACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAAAACAGGCAA
ATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTTCGCTAACTG
GCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCTTTAAAAATC
CTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACAGGCAGGGTC
ACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGTACCTCGAGG
ATAATCTGGAGCATGGGGCTCCTTTGCCAGATAGGTACGTTTCAGGGAAT
TGATTTTGTCAAGCGTGCCTGCAAAAGCGAGCTGCTCACCTACTCAGGTC
ACTCATGCCCTCGCGCATGGGGTGTTTTCTTTTGCGCGTGCGATGTTTCG
ATTAATATGCATATAGATGGTTATCTGCTTCTCGTTCGTGTCTTATCTGC
AAAAGACACCGAGGATATGGGGATTTGATCCCCATTCCATGCCTTTTCCC
TTCCGTAGTCTGGTTGAGATACCAACCCTTCCCTCTCCTGATTGCACACA
TTACGTACATACACGCCCTCGCACATTGACAACGCATCACTAGACTTCGC
CGCTACCTTAGATCCTTCCGCCCCTCTACCTACTCCTCCTCACCCATGAT
ACCTTCCCCCCCTCTCCCTCTCCCCAAAAATAGAGTAAAAGAGACGTTCC
ACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACCACGAGGGCC
GACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGACGACGATGA
GGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGAG
GGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCCA
GGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATCAGCATCATC
ATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGG
ACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCACGCGGCCTTG
CGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTATGATCTGTT
AGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGTTTGAGAGGC
ATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGCG
GAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGATGAGTAGAAA
TTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATAA
AGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAAGAGGAGGAGGAGGA
GTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGGGGGAGGGAT
GTGGGGCGTGGGGGGGGGAGGAAATGATGTATTGGGAGGAGGAGGAGGAG
GAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGGG
GGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGCAATATTGC
CTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTACGAGTGGT
TTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGGGAAATCGG
TGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGAGGGGGGGG
AGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGGTTGGAGG
AGAAGAAGGGGTTGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGGGAGG
GAGGGTGTAAAAAGTTTTGGGGGCATCGCAGCACTTAGGTGA

Coding sequence (CDS) from alignment at scaffold_6:168700..172041+

>mRNA_3376 ID=mRNA_3376|Name=jgi.p|Nanoce1779_2|669367|organism=Nannochloropsis oceanica|type=CDS|length=2676bp|location=Sequence derived from alignment at scaffold_6:168700..172041+ (Nannochloropsis oceanica)
ATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCTTTAAAAATCCTTCC
CGCCAAATCCCACACCCTACCCACCCATCAATCACAGGCAGGGTCACAGG
AGGAGGACGACGACGGTGGAATGATTGGACCAGGGTACCTCGAGGATAAT
CTGGAGCATGGGGCTCCTTTGCCAGATAGAGTAAAAGAGACGTTCCACCT
TCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACCACGAGGGCCGACC
GTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGACGACGATGAGGAA
GAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGAGGGAA
GAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCCAGGCG
GCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATCAGCATCATCATTA
GACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGA
TGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCACGCGGCCTTGCGGT
GCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTATGATCTGTTAGAC
ACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGTTTGAGAGGCATTA
CGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGCGGAGC
AGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGATGAGTAGAAATTAC
CAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATAAAGAG
GGGAAGGGGGAGGTGGCCGGATGCGGAGGGAAGAGGAGGAGGAGGAGTAG
GAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGGGGGAGGGATGTGG
GGCGTGGGGGGGGGAGGAAATGATGTATTGGGAGGAGGAGGAGGAGGAGG
AGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGGGGGAG
GGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGCAATATTGCCTAT
GGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTACGAGTGGTTTCA
CTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGGGAAATCGGTGGC
TGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGAGGGGGGGGAGGG
GTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGGTTGGAGGAGAA
GAAGGGGTTGAGGGAGGGAGGGAGGGAGGGAGGGGAGGGAGGGAGGGAGG
GTGTAAAAAGTTTTGGGGGCATCGCAGCACTTAGGTGAATGCCCATGGCG
TGCATCACCAGCGCACTGCCCCCTTTAAAAATCCTTCCCGCCAAATCCCA
CACCCTACCCACCCATCAATCACAGGCAGGGTCACAGGAGGAGGACGACG
ACGGTGGAATGATTGGACCAGGGTACCTCGAGGATAATCTGGAGCATGGG
GCTCCTTTGCCAGATAGAGTAAAAGAGACGTTCCACCTTCTCCGTGAGCT
GGACGTGGCCACCCGTCTGCTGACCACGAGGGCCGACCGTTTGATAGGGG
CTACGGATGGAATACCGCAGCGAGACGACGATGAGGAAGAGGATGAGGAA
GAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGAGGGAAGAAAGAGAATAG
CGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCCAGGCGGCAGCAGCAGTA
GAGGTAAAGGCAAGGGAAGAGCATCAGCATCATCATTAGACTCTGAAGAT
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGATGCGTCCCGGCG
AGCGACCCTCCGGCAGTTCCAGCACGCGGCCTTGCGGTGCGCAGACGAGA
AGATCCAGCTTGCCATCCATGTTTATGATCTGTTAGACACCCAAATTAGG
CACATCGATTCGGACTTGAGGCGGTTTGAGAGGCATTACGGTTATGTCCC
CCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGCGGAGCAGGAGAAGCAGC
AGCAGCAGCAGCAGCGGCAATTGATGAGTAGAAATTACCAATATATGCAG
AAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATAAAGAGGGGAAGGGGGAG
GTGGCCGGATGCGGAGGGAAGAGGAGGAGGAGGAGTAGGAGGAAGCAGTC
GGTTGACGTACAGTCGAGGGGGAGGGGGAGGGATGTGGGGCGTGGGGGGG
GGAGGAAATGATGTATTGGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGG
GAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGGGGGAGGGGTGGACCCGA
ACGAGCCGATCTACTGTTACTGTCGCAATATTGCCTATGGGGAGATGATA
GGGTGTGACAACCCGAGCTGTCAGTACGAGTGGTTTCACTACAAGTGCGT
GGGCTTAACGAGGCAGCCGACGGCGGGAAATCGGTGGCTGTGTCCGAAGT
GCAAGAGGGAGCAGGGAGGAAGAGGAGGGGGGGGAGGGGTAGGGTATTCG
ACGAGTGCGGCCGCGGTCCTTGATCGGTTGGAGGAGAAGAAGGGGTTGAG
GGAGGGAGGGAGGGAGGGAGGGGAGGGAGGGAGGGAGGGTGTAAAAAGTT
TTGGGGGCATCGCAGCACTTAGGTGA

Synonyms

Publications