jgi.p|Nanoce1779_2|581931, mRNA_3375 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581931
Unique NamemRNA_3375
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length602
Alignment locationscaffold_6:168700..169938 -

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Properties
Property NameValue
TranscriptId582017
TrackFilteredModels2
ProteinId581931
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:168700..169938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581931gene_3375Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581931mRNA_3375-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3375CDS_3375Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3375 ID=mRNA_3375|Name=jgi.p|Nanoce1779_2|581931|organism=Nannochloropsis oceanica|type=mRNA|length=602bp
ACAGGACGGAGAGAAAAGGGTCGTTCAAGATAGCTGAGGAATTAACAAGA
AGAGGGGGGTCGTCGCAAGTTCACCTAGAGCACTATGATTATTCCTGTGC
GCTGCTTCACGTGTGGCAAGGTCATCGGCAACAAGTACGAAGTGTACGTG
GAGTACCTCAAGAATGACTACAAAGAGGGTGTGGCGCTGGACAAGGTGGG
CTTGAAGCGGTACTGCTGCCGACGGATGGTTCTCACGCACGTGGACCTGA
TTAGCAAGCTTCTTAACTACAATACCTTGGCAAAATCTGGCTACCTTAAG
GACGGGGAGTAGTAATATATCCTTTGCTCAATCAAGACAATGAATGATGA
AGGTTTGAAGTGCACATTTCCAGGGGGCGGGAGGGAGTTATGGAGGCCAG
GACGGGAGGGAAAATATCGCGCAGAGGCCTAGTTAAGACAAGTGACCCTA
AACCCTACATGTACAAAGAAACCAGACACAGATTAAGTTGAAATGTCACC
GAGAAATGTCTGTTTTGTTCGCGGTGTTGTTGTTTTCATCTTGTCTCTAC
ATTTGGTAAGCATGTAAGGCTCGAAGACGTGTATGTGCCCGGGAGAAATT
TC
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protein sequence of jgi.p|Nanoce1779_2|581931

>mRNA_3375-protein ID=mRNA_3375-protein|Name=jgi.p|Nanoce1779_2|581931|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MIIPVRCFTCGKVIGNKYEVYVEYLKNDYKEGVALDKVGLKRYCCRRMVL
THVDLISKLLNYNTLAKSGYLKDGE*
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mRNA from alignment at scaffold_6:168700..169938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3375 ID=mRNA_3375|Name=jgi.p|Nanoce1779_2|581931|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at scaffold_6:168700..169938- (Nannochloropsis oceanica)
ACAGGACGGAGAGAAAAGGGTCGTTCAAGATAGCTGAGGAATTAACAAGA
AGAGGGGGGTCGTCGCAAGTTCACCTAGAGCACTATGATTATTCCTGTGC
GCTGCTTCACGTGTGGCAAGGTAAACAGAGAATATGAGGAGGAGGCAAGG
GAGGGTGTGGAAGCGCCTTGGGAGATATGGGGGCGAGACGGCAAAGAGGA
GGTTCAAATGAGGAGGAATTAAGGCATGGGGCACGAAGCGGACAAGAAGA
GTGTCACGAGAACATGAACGGTAGACCTCCTGAACTATGCTGCGTGAGAA
GACGCGATGAAAGTCTATGACTTACACCTTTCTTCTTGTCCCCTCCCTCC
CTTTCCAACTCCACCAGGTCATCGGCAACAAGTACGAAGTGTACGTGGAG
TACCTCAAGAATGACTACAAAGAGGGGTACGTGTCTGAAGCGAAGATGGG
TAGTGAATAGATGAGTTAAGAAAAGTGGCGTGCTTTGCCTTAGTTTTGTC
ACTTGGGTTCACCCCTTGTTGTCTTTGAACACCTGATACGCCTGTTGCGC
TCTCCCTCACAAGTACTTTTCCTTCCCGTGACATTTTTTGCCGGAGTAGA
AAGCTGTAGGATCATTACTATGTGTGATGTTGTCAGGCACGACACTCGGG
TGATGGAATTCTTTGTATCTTTCCTTCTTGCCCTCTCTCATCTCCCTCTC
TATTACTGTACAAGTCAAATGGTTGAGGCTCAATGCAACCATGTCCCTCC
TTGTCGCTGCTCTTATCTCACAAACCTTTTGTCCTTCTCACCTTACCTTT
TCACCCTGTAACACAGTGTGGCGCTGGACAAGGTGGGCTTGAAGCGGTAC
TGCTGCCGACGGATGGTTCTCACGCACGTGGACCTGATTAGCAAGCTTCT
TAACTACAATACCTTGGCAAAATCTGGCTACCTTAAGGACGGGGAGTAGT
AATATATCCTTTGCTCAATCAAGACAATGAATGATGAAGGTTTGAAGTGC
ACATTTCCAGGGGGCGGGAGGGAGTTATGGAGGCCAGGACGGGAGGGAAA
ATATCGCGCAGAGGCCTAGTTAAGACAAGTGACCCTAAACCCTACATGTA
CAAAGAAACCAGACACAGATTAAGTTGAAATGTCACCGAGAAATGTCTGT
TTTGTTCGCGGTGTTGTTGTTTTCATCTTGTCTCTACATTTGGTAAGCAT
GTAAGGCTCGAAGACGTGTATGTGCCCGGGAGAAATTTC
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Coding sequence (CDS) from alignment at scaffold_6:168700..169938-

>mRNA_3375 ID=mRNA_3375|Name=jgi.p|Nanoce1779_2|581931|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_6:168700..169938- (Nannochloropsis oceanica)
TGTGGCGCTGGACAAGGTGGGCTTGAAGCGGTACTGCTGCCGACGGATGG
TTCTCACGCACGTGGACCTGATTAGCAAGCTTCTTAACTACAATACCTTG
GCAAAATCTGGCTACCTTAAGGACGGGGAGTAGGTCATCGGCAACAAGTA
CGAAGTGTACGTGGAGTACCTCAAGAATGACTACAAAGAGGGATGATTAT
TCCTGTGCGCTGCTTCACGTGTGGCAAGTGTGGCGCTGGACAAGGTGGGC
TTGAAGCGGTACTGCTGCCGACGGATGGTTCTCACGCACGTGGACCTGAT
TAGCAAGCTTCTTAACTACAATACCTTGGCAAAATCTGGCTACCTTAAGG
ACGGGGAGTAGGTCATCGGCAACAAGTACGAAGTGTACGTGGAGTACCTC
AAGAATGACTACAAAGAGGGATGATTATTCCTGTGCGCTGCTTCACGTGT
GGCAAGTGTGGCGCTGGACAAGGTGGGCTTGAAGCGGTACTGCTGCCGAC
GGATGGTTCTCACGCACGTGGACCTGATTAGCAAGCTTCTTAACTACAAT
ACCTTGGCAAAATCTGGCTACCTTAAGGACGGGGAGTAGGTCATCGGCAA
CAAGTACGAAGTGTACGTGGAGTACCTCAAGAATGACTACAAAGAGGGAT
GATTATTCCTGTGCGCTGCTTCACGTGTGGCAAG
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Synonyms
Publications