jgi.p|Nanoce1779_2|581930, mRNA_3374 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581930
Unique NamemRNA_3374
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1347
Alignment locationscaffold_6:166410..167756 -

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Properties
Property NameValue
TranscriptId582016
TrackFilteredModels2
ProteinId581930
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:166410..167756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581930gene_3374Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581930mRNA_3374-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3374CDS_3374Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3374 ID=mRNA_3374|Name=jgi.p|Nanoce1779_2|581930|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GGGGGAGGGAGGGGGGCAGGAGGAGGGAGATGACGCGTTGGATGAGATGT
TTACAAGCAAGAAGAAGAAGAAGGGCAGCAAGAAGGAGAAGAAGGAGGAG
GGTGAGGTAGGAGGGGAGGAAGCAGCGGAGGAGGACGCAGACTTGGATGC
AGCCTTCTTGGGGAGCAAGAAGAAGAAGAAGAGCAAGCGGAAGGAGGAGG
GAGGCGAGGAGGGCGCGGGTGAGGAAGGTGCAGTGTACGATTCGAAAGAA
GCCAACTATAGCTACGATGAGCTCTTACAGCGGATGCAGATGTTGCTGCA
GGACGGCGATCCCAGCAAGGGCGTGTCGTTCGGGCGTGTGCCAATTAAGA
TGCCGCCCATCAATCTAGTGCGGATCGGAACGAAAAAGACGCGGTGGGAC
AATTTCCAAGATATTTGCAAGTGTATGAACCGTACGGTGGAGCACCTCTT
TCAGTTTTTGGTGGCGGAATTGGGCACGGAGGGGTCGATTGATGGAAACA
ACCGGCTGGTCCTCCGGGGTAAATACGTGCCGAAGGGGATCGAGAGTCTG
TTGCGGAAGTATATCGGGGAGTACGTGGCGTGCACGACGTGCAAGAGCCC
GAGCACCAGCCTGAGCCGGGATAGTGTCAGTCGGTTGTATTTCGTGCACT
GCCAGTCGTGCGGGTCCTCGCGGTCGGTGGCGCCCATAAGGACGGGCTTC
CATGCGCAAACGAGGGCGGATCGACGGGCGCTGCGGAAGTAGGGGAAAGG
GGGAAGGAGGAGGGGGGAAGAGGGGGGACGTAGAAATTAGGGAGGAGAGG
CACTGAGGGATGGTTTTTGTGCCAAATTGACCTCTGTTTTTACCATTCAT
CAACCTTTCGGTCGGTAGGCGGAGAGCAGGGATTATGGAGGGGAGAGGGG
AGAGGTTTATGTCCATGGGTGGGTAAGAAGAAGAAGGAGGAGGAGGAGGA
GGAGGAGGAGTGAGGAAGGGAGAAGAGCAAAAGTAGAAGCAGTACTTAGA
AACAATAGAAAGCCCCTTATTCAAAAGCAGGAAAGAAGTACGGAGATCAA
AAAAGGGTTAGGCGGGAGGAGAGGGCCAGAAGGGAGGACAAAGGAAGCGA
CACGTAGGGCTGAAAAGATGAAGCGTCAAGTGATCGAACGGAGCAAGAAC
AAGCACTGGGAGACAAGTCCGGGGGGCATTACGTCTCTCTCAGGCAGAGG
AGACGAAGAGACGAGGGGTTGGGAACACCGAACACTGCTACAACAACGAC
GACAACAATCATGAATCCTCCCCAAAAAAAGGAAAAAGGACCGAAAAAAA
ATAACCGTCACCAATACTGATGCTTACCAAATGCATTGGACACCATC
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protein sequence of jgi.p|Nanoce1779_2|581930

>mRNA_3374-protein ID=mRNA_3374-protein|Name=jgi.p|Nanoce1779_2|581930|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MFTSKKKKKGSKKEKKEEGEVGGEEAAEEDADLDAAFLGSKKKKKSKRKE
EGGEEGAGEEGAVYDSKEANYSYDELLQRMQMLLQDGDPSKGVSFGRVPI
KMPPINLVRIGTKKTRWDNFQDICKCMNRTVEHLFQFLVAELGTEGSIDG
NNRLVLRGKYVPKGIESLLRKYIGEYVACTTCKSPSTSLSRDSVSRLYFV
HCQSCGSSRSVAPIRTGFHAQTRADRRALRK*
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mRNA from alignment at scaffold_6:166410..167756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3374 ID=mRNA_3374|Name=jgi.p|Nanoce1779_2|581930|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_6:166410..167756- (Nannochloropsis oceanica)
GGGGGAGGGAGGGGGGCAGGAGGAGGGAGATGACGCGTTGGATGAGATGT
TTACAAGCAAGAAGAAGAAGAAGGGCAGCAAGAAGGAGAAGAAGGAGGAG
GGTGAGGTAGGAGGGGAGGAAGCAGCGGAGGAGGACGCAGACTTGGATGC
AGCCTTCTTGGGGAGCAAGAAGAAGAAGAAGAGCAAGCGGAAGGAGGAGG
GAGGCGAGGAGGGCGCGGGTGAGGAAGGTGCAGTGTACGATTCGAAAGAA
GCCAACTATAGCTACGATGAGCTCTTACAGCGGATGCAGATGTTGCTGCA
GGACGGCGATCCCAGCAAGGGCGTGTCGTTCGGGCGTGTGCCAATTAAGA
TGCCGCCCATCAATCTAGTGCGGATCGGAACGAAAAAGACGCGGTGGGAC
AATTTCCAAGATATTTGCAAGTGTATGAACCGTACGGTGGAGCACCTCTT
TCAGTTTTTGGTGGCGGAATTGGGCACGGAGGGGTCGATTGATGGAAACA
ACCGGCTGGTCCTCCGGGGTAAATACGTGCCGAAGGGGATCGAGAGTCTG
TTGCGGAAGTATATCGGGGAGTACGTGGCGTGCACGACGTGCAAGAGCCC
GAGCACCAGCCTGAGCCGGGATAGTGTCAGTCGGTTGTATTTCGTGCACT
GCCAGTCGTGCGGGTCCTCGCGGTCGGTGGCGCCCATAAGGACGGGCTTC
CATGCGCAAACGAGGGCGGATCGACGGGCGCTGCGGAAGTAGGGGAAAGG
GGGAAGGAGGAGGGGGGAAGAGGGGGGACGTAGAAATTAGGGAGGAGAGG
CACTGAGGGATGGTTTTTGTGCCAAATTGACCTCTGTTTTTACCATTCAT
CAACCTTTCGGTCGGTAGGCGGAGAGCAGGGATTATGGAGGGGAGAGGGG
AGAGGTTTATGTCCATGGGTGGGTAAGAAGAAGAAGGAGGAGGAGGAGGA
GGAGGAGGAGTGAGGAAGGGAGAAGAGCAAAAGTAGAAGCAGTACTTAGA
AACAATAGAAAGCCCCTTATTCAAAAGCAGGAAAGAAGTACGGAGATCAA
AAAAGGGTTAGGCGGGAGGAGAGGGCCAGAAGGGAGGACAAAGGAAGCGA
CACGTAGGGCTGAAAAGATGAAGCGTCAAGTGATCGAACGGAGCAAGAAC
AAGCACTGGGAGACAAGTCCGGGGGGCATTACGTCTCTCTCAGGCAGAGG
AGACGAAGAGACGAGGGGTTGGGAACACCGAACACTGCTACAACAACGAC
GACAACAATCATGAATCCTCCCCAAAAAAAGGAAAAAGGACCGAAAAAAA
ATAACCGTCACCAATACTGATGCTTACCAAATGCATTGGACACCATC
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Coding sequence (CDS) from alignment at scaffold_6:166410..167756-

>mRNA_3374 ID=mRNA_3374|Name=jgi.p|Nanoce1779_2|581930|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_6:166410..167756- (Nannochloropsis oceanica)
ATGTTTACAAGCAAGAAGAAGAAGAAGGGCAGCAAGAAGGAGAAGAAGGA
GGAGGGTGAGGTAGGAGGGGAGGAAGCAGCGGAGGAGGACGCAGACTTGG
ATGCAGCCTTCTTGGGGAGCAAGAAGAAGAAGAAGAGCAAGCGGAAGGAG
GAGGGAGGCGAGGAGGGCGCGGGTGAGGAAGGTGCAGTGTACGATTCGAA
AGAAGCCAACTATAGCTACGATGAGCTCTTACAGCGGATGCAGATGTTGC
TGCAGGACGGCGATCCCAGCAAGGGCGTGTCGTTCGGGCGTGTGCCAATT
AAGATGCCGCCCATCAATCTAGTGCGGATCGGAACGAAAAAGACGCGGTG
GGACAATTTCCAAGATATTTGCAAGTGTATGAACCGTACGGTGGAGCACC
TCTTTCAGTTTTTGGTGGCGGAATTGGGCACGGAGGGGTCGATTGATGGA
AACAACCGGCTGGTCCTCCGGGGTAAATACGTGCCGAAGGGGATCGAGAG
TCTGTTGCGGAAGTATATCGGGGAGTACGTGGCGTGCACGACGTGCAAGA
GCCCGAGCACCAGCCTGAGCCGGGATAGTGTCAGTCGGTTGTATTTCGTG
CACTGCCAGTCGTGCGGGTCCTCGCGGTCGGTGGCGCCCATAAGGACGGG
CTTCCATGCGCAAACGAGGGCGGATCGACGGGCGCTGCGGAAGTAG
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Synonyms
Publications