jgi.p|Nanoce1779_2|581903, mRNA_3369 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581903
Unique Name	mRNA_3369
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1190
Alignment location	scaffold_6:144330..145519 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581989
Track	FilteredModels2
ProteinId	581903

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:144330..145519 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581903	gene_3369	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581903	mRNA_3369-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3369	CDS_3369	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:144330..145519+
coding sequence from alignment at scaffold_6:144330..145519+

mRNA sequence

>mRNA_3369 ID=mRNA_3369|Name=jgi.p|Nanoce1779_2|581903|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
CTGGGCAAAGACGAGCTCGCGGGTGTATAATGAAAGTGAGTGCCGCTGTC
CAAAATGGGCCGGTACACTCCTCCTCCCCCTCCTTCTCCTCCACTACTGG
CATCCTCGAACCCTGTCCGTAATTCCATCATCGTCGTGGCCGTTGTTGCG
GCTGCTGGCGCCTGCGTCGTCACCGCCATCCTCGTCATCATCCCTGCTCC
TCCCCCACCTCCCCAACCGCCCCCTGCAGCACCAGCCACGCGCATGGGGG
ACAAGGAGGAGGAGGTGGACGAGGAGGTAATTACCATCATCCCACTGCTC
CCTCCAGCCCCACCTTGACTTATGAAAATCTGTGATGGAGAGTCCAGAGG
CACGCCGTCTTGCCAGTCGGGAGGAATGGCTTGCTGCCCCTCCACCAACC
CCAACGACGTGACGGGCGCTTGAAAGACCTCCGCCGACGAGGAGGAAGGA
CACGAGGAGGAGGACACAAGGGAGGAAACGGCGGGGAAATCGGCGGAGGA
GAACAGGGACATGTTGGCAAAGTCCAGACTGCCCCCGCTGCTCCCGCTGC
TGTTGCTTCTCCCACTCTCACTGTCGTGCGAGGCTAGTCCTACCATCACC
ATGGACGTGGAATCGGTCGTTTTTGAGGGAACAGGGGTGACATGAATGTC
CCTATGCGGGGCTTTTACAGCGGCCAAAGGTGGTGGTGGGTCCATCAGGC
GCGAGTTTGGTTGCTGCCGTTGCTGCTGCTGCGTCAGTTGCCGCTGCTGC
ATGGTGCTGGGGGAAAGCTGTCGCTGCCTCTTATCGCTCTGAACATCATG
TCGGACCGTCTCGCGATGAGTAGCCGATGGCTTGGATCCATGGCTATCAC
CACTGCTGCCAGCTATACAGCTGCTACAGCTGCTGCTGCTGCTGTTGGCC
GTGTCTGCCAGCTGCATGACTAATCCCGCAAAAGAGCCTGGGGAGAGGAC
TTGACGCAGCCCGACCGCCACCTCTTCCTCGTGTTGCGCGGACGATGAGG
GTGCATCGAGGACCGGTGCCTCAGACAAGACCTGGACGTGTAATTGCTGA
TGTGCAACGCTACTGCTGCTGCTATTGCCGCTGTTGCTGTCATTGCTGGT
GGTGGTGGTGGTGGTGGTGGTTGTGGTAGTCCTGCTCTGGCCGCCCGTGT
CCACGTCGCGCACGTTGAGCTTGTCTTGTGACATTCCTGT

protein sequence of jgi.p|Nanoce1779_2|581903

>mRNA_3369-protein ID=mRNA_3369-protein|Name=jgi.p|Nanoce1779_2|581903|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MNVPMRGFYSGQRWWWVHQARVWLLPLLLLRQLPLLHGAGGKLSLPLIAL
NIMSDRLAMSSRWLGSMAITTAASYTAATAAAAAVGRVCQLHD*

mRNA from alignment at scaffold_6:144330..145519+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3369 ID=mRNA_3369|Name=jgi.p|Nanoce1779_2|581903|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp|location=Sequence derived from alignment at scaffold_6:144330..145519+ (Nannochloropsis oceanica)
CTGGGCAAAGACGAGCTCGCGGGTGTATAATGAAAGTGAGTGCCGCTGTC
CAAAATGGGCCGGTACACTCCTCCTCCCCCTCCTTCTCCTCCACTACTGG
CATCCTCGAACCCTGTCCGTAATTCCATCATCGTCGTGGCCGTTGTTGCG
GCTGCTGGCGCCTGCGTCGTCACCGCCATCCTCGTCATCATCCCTGCTCC
TCCCCCACCTCCCCAACCGCCCCCTGCAGCACCAGCCACGCGCATGGGGG
ACAAGGAGGAGGAGGTGGACGAGGAGGTAATTACCATCATCCCACTGCTC
CCTCCAGCCCCACCTTGACTTATGAAAATCTGTGATGGAGAGTCCAGAGG
CACGCCGTCTTGCCAGTCGGGAGGAATGGCTTGCTGCCCCTCCACCAACC
CCAACGACGTGACGGGCGCTTGAAAGACCTCCGCCGACGAGGAGGAAGGA
CACGAGGAGGAGGACACAAGGGAGGAAACGGCGGGGAAATCGGCGGAGGA
GAACAGGGACATGTTGGCAAAGTCCAGACTGCCCCCGCTGCTCCCGCTGC
TGTTGCTTCTCCCACTCTCACTGTCGTGCGAGGCTAGTCCTACCATCACC
ATGGACGTGGAATCGGTCGTTTTTGAGGGAACAGGGGTGACATGAATGTC
CCTATGCGGGGCTTTTACAGCGGCCAAAGGTGGTGGTGGGTCCATCAGGC
GCGAGTTTGGTTGCTGCCGTTGCTGCTGCTGCGTCAGTTGCCGCTGCTGC
ATGGTGCTGGGGGAAAGCTGTCGCTGCCTCTTATCGCTCTGAACATCATG
TCGGACCGTCTCGCGATGAGTAGCCGATGGCTTGGATCCATGGCTATCAC
CACTGCTGCCAGCTATACAGCTGCTACAGCTGCTGCTGCTGCTGTTGGCC
GTGTCTGCCAGCTGCATGACTAATCCCGCAAAAGAGCCTGGGGAGAGGAC
TTGACGCAGCCCGACCGCCACCTCTTCCTCGTGTTGCGCGGACGATGAGG
GTGCATCGAGGACCGGTGCCTCAGACAAGACCTGGACGTGTAATTGCTGA
TGTGCAACGCTACTGCTGCTGCTATTGCCGCTGTTGCTGTCATTGCTGGT
GGTGGTGGTGGTGGTGGTGGTTGTGGTAGTCCTGCTCTGGCCGCCCGTGT
CCACGTCGCGCACGTTGAGCTTGTCTTGTGACATTCCTGT

Coding sequence (CDS) from alignment at scaffold_6:144330..145519+

>mRNA_3369 ID=mRNA_3369|Name=jgi.p|Nanoce1779_2|581903|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_6:144330..145519+ (Nannochloropsis oceanica)
ATGAATGTCCCTATGCGGGGCTTTTACAGCGGCCAAAGGTGGTGGTGGGT
CCATCAGGCGCGAGTTTGGTTGCTGCCGTTGCTGCTGCTGCGTCAGTTGC
CGCTGCTGCATGGTGCTGGGGGAAAGCTGTCGCTGCCTCTTATCGCTCTG
AACATCATGTCGGACCGTCTCGCGATGAGTAGCCGATGGCTTGGATCCAT
GGCTATCACCACTGCTGCCAGCTATACAGCTGCTACAGCTGCTGCTGCTG
CTGTTGGCCGTGTCTGCCAGCTGCATGACTAA

Synonyms

Publications