jgi.p|Nanoce1779_2|581902, mRNA_3368 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581902
Unique NamemRNA_3368
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2139
Alignment locationscaffold_6:142341..144479 -

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Properties
Property NameValue
TranscriptId581988
TrackFilteredModels2
ProteinId581902
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:142341..144479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581902gene_3368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581902mRNA_3368-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3368CDS_3368Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3368 ID=mRNA_3368|Name=jgi.p|Nanoce1779_2|581902|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp
CGCAACAACGGCCACGACGATGATGGAATTACGGACAGGGTTCGAGGATG
CCAGTAGTGGAGGAGAAGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTG
GACAGCGGCACTCACTTTCATTATACACCCGCGAGCTCGTCTTTGCCCAG
CTCGATCCCGCCGTCACCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTA
CTGCAACACCGGCTGCATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAA
GGAATTATTGGTGGTGGAAGGGTGCCAGCTGCTCACCAACACCAGCATTC
CTCTCCTCCTCCCTTGTCCTCCTACCCCACCGCGAGTACCTTCTCCACCG
GCGCAGTCTTCATGCAGCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCG
CCGCTCCTCACAACGTCCCCCATTCTCTTCAACGCGTACTATGCCCCTCC
ACAGCCCTCCTCCTCTTCTTCTTCCTCAACCTCGGTCACGACCTCCACCA
TCTCCTCTCCTTCCTCTTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCC
AGTCGTGTGTCAAGGACCCGGAGGCGATCTTCCAGCATTACTGCCGGTAG
TAGTGGTGCCTCTCTCGCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGA
CAGAGGCTGACCAAACGGGGCTTGTGCGCGGGAATTATCGGTGTGGACGC
TGTGGAGGACTTAAGAAGAACCATGTCTGTCCTTTTTTGTACGAGGAAGA
CTTGGAGACGCAGGATGCAGGGACGGAAGTGGACCTCATGCTTACGCAGG
GGAATCCGGCCAAGGGGGGGTTGCCTGATATGCCGTCAGGACTGTCCTTT
CATATGTTGACGGTAAGGCCTCGCTCTTTCCCTCTTACCATGAGGGCGAC
AGCCGTAATGGGAGACGGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAA
TGGAGTTGATGGAGACATTTGGACCCTTATCTTCACCTCTTTCAACGGCA
TTGTCTCCTGTGCTGGTGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAA
TCAGCAACAACAGCCACTTTCGCCGTCGCAGCAGCAACAGCAGCGACAGA
AGAATCAGCAGCAGCAGCGGTAGAGCTGACTAACTTATACAAAGATCATG
CTTACCCGCACCTGGCGCATTAACATCGGCACCAATACCAGTATCGGCAC
CAGCACCGGCATAAACCAACAACATCAACAACACTTGCGCCGAAGAAGTT
AATGGATAAGGAAGATGTGGGATGAAATCCGTAGTGTTTCTTCTTGTGTG
TGTACGTGCTTGGTGTTTGCATGTGATTACAAGGCTCTATAGCCTTTTAT
CCTGGAGTGATGAGATACAAGTTGTTCATACATGATGGTTTACTGAGTGT
TCGATGTATCAAGGGATGGAAAGAGAATGCAAAAGATGATCATAAAGGCC
TATATGCTGGATGAAAAAAAATGTGGTGAACTGCAGAAACGCAGAGACAC
GGAGTACAGGGAAAATACCGCCATTATGTGATGATACTTTTGCGTGTTAT
TCACCACGCGCAGGAATAGCAAAGTCTGTTTATAGAAGATTTACATATTA
TTATTCTTGGGTAGTTATGCATTTTAGATTATCCTTAGGCCCCCCACATT
CATGAGTATGAATACATATACATTACCAGCTACGCCTTGTTGCGCGTCCT
ACACTTTTTTGAAAGCAGGTGGTTTAGCCGACATGAAAATTTAAAGACTT
GCCACATCAGTCGAAAAGAAACGTAGACACCAAAAAAAAATTTGAAAGTA
TGACCAAAGAGACAACAAAGAAGAGAGTGACTTCGAAGATATATAAATAC
ATGAATACGAATTTGCTCGTGCTAGCTCATTAGACTTCTCAATACACTTT
TCGTCGTAGAATAAAATATGTACTGCTCCGCCATCGTACCGCCACGGCCA
ATATTGTAGCGGCATGCCCACAGGTTTGGAGATCAGTGCGGCACTGCCGC
GACCAGCGTTGCTGTCTTCCATGCACCTAAATTCGGACTCTCTCTTGTTG
TTGCGGGTGTCCGAGCAAGCAAGATAACTACTCTGTGAAAGAGAGCAGGC
GAAAAAAAAACACGAAAAAGAAGTCGACATGAACTATAC
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protein sequence of jgi.p|Nanoce1779_2|581902

>mRNA_3368-protein ID=mRNA_3368-protein|Name=jgi.p|Nanoce1779_2|581902|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MMELRTGFEDASSGGEGGGGGVYRPILDSGTHFHYTPASSSLPSSIPPSP
RSVVSPAVNSTATPAAWIGGTSGKGGEGIIGGGRVPAAHQHQHSSPPPLS
SYPTASTFSTGAVFMQHALSVPPVSPPPLLTTSPILFNAYYAPPQPSSSS
SSSTSVTTSTISSPSSSTAVPAAAATASRVSRTRRRSSSITAGSSGASLA
AAAAAAAAAETEADQTGLVRGNYRCGRCGGLKKNHVCPFLYEEDLETQDA
GTEVDLMLTQGNPAKGGLPDMPSGLSFHMLTVRPRSFPLTMRATAVMGDG
DAGGARGKGGMELMETFGPLSSPLSTALSPVLVPRPVPPSAYLNQQQQPL
SPSQQQQQRQKNQQQQR*
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mRNA from alignment at scaffold_6:142341..144479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3368 ID=mRNA_3368|Name=jgi.p|Nanoce1779_2|581902|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at scaffold_6:142341..144479- (Nannochloropsis oceanica)
CGCAACAACGGCCACGACGATGATGGAATTACGGACAGGGTTCGAGGATG
CCAGTAGTGGAGGAGAAGGAGGGGGAGGAGGAGTGTACCGGCCCATTTTG
GACAGCGGCACTCACTTTCATTATACACCCGCGAGCTCGTCTTTGCCCAG
CTCGATCCCGCCGTCACCCCGGTCGGTGGTGTCACCGGCTGTAAATTCTA
CTGCAACACCGGCTGCATGGATTGGTGGAACGAGTGGAAAAGGAGGGGAA
GGAATTATTGGTGGTGGAAGGGTGCCAGCTGCTCACCAACACCAGCATTC
CTCTCCTCCTCCCTTGTCCTCCTACCCCACCGCGAGTACCTTCTCCACCG
GCGCAGTCTTCATGCAGCATGCTCTTTCTGTCCCTCCTGTCTCCCCCCCG
CCGCTCCTCACAACGTCCCCCATTCTCTTCAACGCGTACTATGCCCCTCC
ACAGCCCTCCTCCTCTTCTTCTTCCTCAACCTCGGTCACGACCTCCACCA
TCTCCTCTCCTTCCTCTTCAACCGCCGTGCCGGCCGCCGCGGCTACGGCC
AGTCGTGTGTCAAGGACCCGGAGGCGATCTTCCAGCATTACTGCCGGTAG
TAGTGGTGCCTCTCTCGCTGCAGCGGCAGCCGCTGCTGCGGCTGCCGAGA
CAGAGGCTGACCAAACGGGGCTTGTGCGCGGGAATTATCGGTGTGGACGC
TGTGGAGGACTTAAGAAGAACCATGTCTGTCCTTTTTTGTACGAGGAAGA
CTTGGAGACGCAGGATGCAGGGACGGAAGTGGACCTCATGCTTACGCAGG
GGAATCCGGCCAAGGGGGGGTTGCCTGATATGCCGTCAGGACTGTCCTTT
CATATGTTGACGGTAAGGCCTCGCTCTTTCCCTCTTACCATGAGGGCGAC
AGCCGTAATGGGAGACGGGGATGCAGGAGGGGCGAGGGGGAAAGGAGGAA
TGGAGTTGATGGAGACATTTGGACCCTTATCTTCACCTCTTTCAACGGCA
TTGTCTCCTGTGCTGGTGCCTCGTCCGGTGCCGCCCTCTGCTTATCTAAA
TCAGCAACAACAGCCACTTTCGCCGTCGCAGCAGCAACAGCAGCGACAGA
AGAATCAGCAGCAGCAGCGGTAGAGCTGACTAACTTATACAAAGATCATG
CTTACCCGCACCTGGCGCATTAACATCGGCACCAATACCAGTATCGGCAC
CAGCACCGGCATAAACCAACAACATCAACAACACTTGCGCCGAAGAAGTT
AATGGATAAGGAAGATGTGGGATGAAATCCGTAGTGTTTCTTCTTGTGTG
TGTACGTGCTTGGTGTTTGCATGTGATTACAAGGCTCTATAGCCTTTTAT
CCTGGAGTGATGAGATACAAGTTGTTCATACATGATGGTTTACTGAGTGT
TCGATGTATCAAGGGATGGAAAGAGAATGCAAAAGATGATCATAAAGGCC
TATATGCTGGATGAAAAAAAATGTGGTGAACTGCAGAAACGCAGAGACAC
GGAGTACAGGGAAAATACCGCCATTATGTGATGATACTTTTGCGTGTTAT
TCACCACGCGCAGGAATAGCAAAGTCTGTTTATAGAAGATTTACATATTA
TTATTCTTGGGTAGTTATGCATTTTAGATTATCCTTAGGCCCCCCACATT
CATGAGTATGAATACATATACATTACCAGCTACGCCTTGTTGCGCGTCCT
ACACTTTTTTGAAAGCAGGTGGTTTAGCCGACATGAAAATTTAAAGACTT
GCCACATCAGTCGAAAAGAAACGTAGACACCAAAAAAAAATTTGAAAGTA
TGACCAAAGAGACAACAAAGAAGAGAGTGACTTCGAAGATATATAAATAC
ATGAATACGAATTTGCTCGTGCTAGCTCATTAGACTTCTCAATACACTTT
TCGTCGTAGAATAAAATATGTACTGCTCCGCCATCGTACCGCCACGGCCA
ATATTGTAGCGGCATGCCCACAGGTTTGGAGATCAGTGCGGCACTGCCGC
GACCAGCGTTGCTGTCTTCCATGCACCTAAATTCGGACTCTCTCTTGTTG
TTGCGGGTGTCCGAGCAAGCAAGATAACTACTCTGTGAAAGAGAGCAGGC
GAAAAAAAAACACGAAAAAGAAGTCGACATGAACTATAC
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Coding sequence (CDS) from alignment at scaffold_6:142341..144479-

>mRNA_3368 ID=mRNA_3368|Name=jgi.p|Nanoce1779_2|581902|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_6:142341..144479- (Nannochloropsis oceanica)
ATGATGGAATTACGGACAGGGTTCGAGGATGCCAGTAGTGGAGGAGAAGG
AGGGGGAGGAGGAGTGTACCGGCCCATTTTGGACAGCGGCACTCACTTTC
ATTATACACCCGCGAGCTCGTCTTTGCCCAGCTCGATCCCGCCGTCACCC
CGGTCGGTGGTGTCACCGGCTGTAAATTCTACTGCAACACCGGCTGCATG
GATTGGTGGAACGAGTGGAAAAGGAGGGGAAGGAATTATTGGTGGTGGAA
GGGTGCCAGCTGCTCACCAACACCAGCATTCCTCTCCTCCTCCCTTGTCC
TCCTACCCCACCGCGAGTACCTTCTCCACCGGCGCAGTCTTCATGCAGCA
TGCTCTTTCTGTCCCTCCTGTCTCCCCCCCGCCGCTCCTCACAACGTCCC
CCATTCTCTTCAACGCGTACTATGCCCCTCCACAGCCCTCCTCCTCTTCT
TCTTCCTCAACCTCGGTCACGACCTCCACCATCTCCTCTCCTTCCTCTTC
AACCGCCGTGCCGGCCGCCGCGGCTACGGCCAGTCGTGTGTCAAGGACCC
GGAGGCGATCTTCCAGCATTACTGCCGGTAGTAGTGGTGCCTCTCTCGCT
GCAGCGGCAGCCGCTGCTGCGGCTGCCGAGACAGAGGCTGACCAAACGGG
GCTTGTGCGCGGGAATTATCGGTGTGGACGCTGTGGAGGACTTAAGAAGA
ACCATGTCTGTCCTTTTTTGTACGAGGAAGACTTGGAGACGCAGGATGCA
GGGACGGAAGTGGACCTCATGCTTACGCAGGGGAATCCGGCCAAGGGGGG
GTTGCCTGATATGCCGTCAGGACTGTCCTTTCATATGTTGACGGTAAGGC
CTCGCTCTTTCCCTCTTACCATGAGGGCGACAGCCGTAATGGGAGACGGG
GATGCAGGAGGGGCGAGGGGGAAAGGAGGAATGGAGTTGATGGAGACATT
TGGACCCTTATCTTCACCTCTTTCAACGGCATTGTCTCCTGTGCTGGTGC
CTCGTCCGGTGCCGCCCTCTGCTTATCTAAATCAGCAACAACAGCCACTT
TCGCCGTCGCAGCAGCAACAGCAGCGACAGAAGAATCAGCAGCAGCAGCG
GTAG
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Synonyms
Publications