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Properties
| Property Name | Value |
|---|
| TranscriptId | 581985 |
| Track | FilteredModels2 |
| ProteinId | 581899 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_6 | supercontig | scaffold_6:137389..138773 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3365 ID=mRNA_3365|Name=jgi.p|Nanoce1779_2|581899|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
GTGAAGATAACCATCCCTGCAACACCCATGGACATTGCGACTGACTGCCA
CTGAAACGTGCACCAGGTCAAGACTGTATTCCCCCCCAGTGTCGCCACGT
GCCACCCCGCACCAGCGTAATTGCAGAAAAGCATGGTGTTAGTAAACGTG
CAACCCGTCATAAATACATTCCCTGCCACCACCAGCACGTCGGCCCCAAT
CATGACTTGATCCGTAAAAGGCATGAAAATCATCGAGTCCCAGAAGTGGC
AATTGAAGAACCGGACCGTCCCACCTGTCACATAGACATGCCCTCCATAC
ATCCTCCACCCGGTAAAATCCAGTTGGTCCTGAATTGCCCTCTCGGTCAT
TCCCTGGTCCGTCATAACCGCTAGGAAAATGACGCCCACAAAGTTCGCCC
CCTCTGCACCTTCCTCCAGCAAGACCCCTCCTCCTTTCACCTCCAGGACC
TTAGAGTTGATGTCTTCCCGTCCCTCCAGCCCGTATCTATCCCGGTACAT
CCCCATACCTTGCCGAACCCTAACGTACTGTAGTTCCAGGAAACCACCGT
CCATGACAGTAAAGGCGCGCATGCCCATCATTGCATCGATGGTGGGGAGA
AAGGCCGGGTGGCCCAAAATGCGGACGTGCCGCATGACCATGATCTCGTT
CATTTCCATCAGCATGTATGCATCTGGTTCGGGGTTGGAAAGGATGACAA
GAGGGCAGTCGCCCTCCTCCACTGCAACTTGGAGCTCGTCAATGTCCATA
GGCCAACATGTGTCCTTTCCAATGAACTGCTGCAGATCCACTGCGGCTTT
GGGACTGTCGCCACCCATGTCCATGTCCATGTCCATGCCCTTCATCTTAT
CCTTGTTCATCCCCGCCATGGTCAAATCGCCCTTATTGATGGCCTCATTC
ATTTGTAAAGGATCACCGATGCTGTTCTTGGCGATGGCTGCTTGGAGTGC
TGCCTCCATCTCAGGCGTGAGAGGGGTAGTGGGCACGGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGCGTCCAACGAATCCTTG
GGACCGTCCTGGATGCTCTCAAGAATGTCAATCAGTGCATCTCCGGGGCT
CTCCTTGGTGACAGGCGGAGTGATACTGCTGCTGGTGCTGCTGCTCCCCT
TGCTAACACTCTTGCCTCCAACCGTAAAGATGATGGCAAGGACACCGCCC
ATCACCGCCGCTAAGATGAGTCCCCCAACGACGTAGCGTCGTATGCGACG
GCTGCCTCCATTTCCAGGTGCGGCCGAGGATGGTGCAGGTACTGCAGACA
TTGGGGAGTTATAAGACGAGAGCTGCGCTGCTGCGTGCCAGGGGTTAAGC
TTCTCCTTGTTGCCTTTGTTGGGTCTGCCTGCTGT back to topprotein sequence of jgi.p|Nanoce1779_2|581899 >mRNA_3365-protein ID=mRNA_3365-protein|Name=jgi.p|Nanoce1779_2|581899|organism=Nannochloropsis oceanica|type=polypeptide|length=286bp
MTPTKFAPSAPSSSKTPPPFTSRTLELMSSRPSSPYLSRYIPIPCRTLTY
CSSRKPPSMTVKARMPIIASMVGRKAGWPKMRTCRMTMISFISISMYASG
SGLERMTRGQSPSSTATWSSSMSIGQHVSFPMNCCRSTAALGLSPPMSMS
MSMPFILSLFIPAMVKSPLLMASFICKGSPMLFLAMAAWSAASISGVRGV
VGTEEEEEEEEEEEEEEDASNESLGPSWMLSRMSISASPGLSLVTGGVIL
LLVLLLPLLTLLPPTVKMMARTPPITAAKMSPPTT* back to topmRNA from alignment at scaffold_6:137389..138773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3365 ID=mRNA_3365|Name=jgi.p|Nanoce1779_2|581899|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp|location=Sequence derived from alignment at scaffold_6:137389..138773+ (Nannochloropsis oceanica)
GTGAAGATAACCATCCCTGCAACACCCATGGACATTGCGACTGACTGCCA
CTGAAACGTGCACCAGGTCAAGACTGTATTCCCCCCCAGTGTCGCCACGT
GCCACCCCGCACCAGCGTAATTGCAGAAAAGCATGGTGTTAGTAAACGTG
CAACCCGTCATAAATACATTCCCTGCCACCACCAGCACGTCGGCCCCAAT
CATGACTTGATCCGTAAAAGGCATGAAAATCATCGAGTCCCAGAAGTGGC
AATTGAAGAACCGGACCGTCCCACCTGTCACATAGACATGCCCTCCATAC
ATCCTCCACCCGGTAAAATCCAGTTGGTCCTGAATTGCCCTCTCGGTCAT
TCCCTGGTCCGTCATAACCGCTAGGAAAATGACGCCCACAAAGTTCGCCC
CCTCTGCACCTTCCTCCAGCAAGACCCCTCCTCCTTTCACCTCCAGGACC
TTAGAGTTGATGTCTTCCCGTCCCTCCAGCCCGTATCTATCCCGGTACAT
CCCCATACCTTGCCGAACCCTAACGTACTGTAGTTCCAGGAAACCACCGT
CCATGACAGTAAAGGCGCGCATGCCCATCATTGCATCGATGGTGGGGAGA
AAGGCCGGGTGGCCCAAAATGCGGACGTGCCGCATGACCATGATCTCGTT
CATTTCCATCAGCATGTATGCATCTGGTTCGGGGTTGGAAAGGATGACAA
GAGGGCAGTCGCCCTCCTCCACTGCAACTTGGAGCTCGTCAATGTCCATA
GGCCAACATGTGTCCTTTCCAATGAACTGCTGCAGATCCACTGCGGCTTT
GGGACTGTCGCCACCCATGTCCATGTCCATGTCCATGCCCTTCATCTTAT
CCTTGTTCATCCCCGCCATGGTCAAATCGCCCTTATTGATGGCCTCATTC
ATTTGTAAAGGATCACCGATGCTGTTCTTGGCGATGGCTGCTTGGAGTGC
TGCCTCCATCTCAGGCGTGAGAGGGGTAGTGGGCACGGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGCGTCCAACGAATCCTTG
GGACCGTCCTGGATGCTCTCAAGAATGTCAATCAGTGCATCTCCGGGGCT
CTCCTTGGTGACAGGCGGAGTGATACTGCTGCTGGTGCTGCTGCTCCCCT
TGCTAACACTCTTGCCTCCAACCGTAAAGATGATGGCAAGGACACCGCCC
ATCACCGCCGCTAAGATGAGTCCCCCAACGACGTAGCGTCGTATGCGACG
GCTGCCTCCATTTCCAGGTGCGGCCGAGGATGGTGCAGGTACTGCAGACA
TTGGGGAGTTATAAGACGAGAGCTGCGCTGCTGCGTGCCAGGGGTTAAGC
TTCTCCTTGTTGCCTTTGTTGGGTCTGCCTGCTGT back to topCoding sequence (CDS) from alignment at scaffold_6:137389..138773+ >mRNA_3365 ID=mRNA_3365|Name=jgi.p|Nanoce1779_2|581899|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_6:137389..138773+ (Nannochloropsis oceanica)
ATGACGCCCACAAAGTTCGCCCCCTCTGCACCTTCCTCCAGCAAGACCCC
TCCTCCTTTCACCTCCAGGACCTTAGAGTTGATGTCTTCCCGTCCCTCCA
GCCCGTATCTATCCCGGTACATCCCCATACCTTGCCGAACCCTAACGTAC
TGTAGTTCCAGGAAACCACCGTCCATGACAGTAAAGGCGCGCATGCCCAT
CATTGCATCGATGGTGGGGAGAAAGGCCGGGTGGCCCAAAATGCGGACGT
GCCGCATGACCATGATCTCGTTCATTTCCATCAGCATGTATGCATCTGGT
TCGGGGTTGGAAAGGATGACAAGAGGGCAGTCGCCCTCCTCCACTGCAAC
TTGGAGCTCGTCAATGTCCATAGGCCAACATGTGTCCTTTCCAATGAACT
GCTGCAGATCCACTGCGGCTTTGGGACTGTCGCCACCCATGTCCATGTCC
ATGTCCATGCCCTTCATCTTATCCTTGTTCATCCCCGCCATGGTCAAATC
GCCCTTATTGATGGCCTCATTCATTTGTAAAGGATCACCGATGCTGTTCT
TGGCGATGGCTGCTTGGAGTGCTGCCTCCATCTCAGGCGTGAGAGGGGTA
GTGGGCACGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGATGCGTCCAACGAATCCTTGGGACCGTCCTGGATGCTCTCAAGAATGT
CAATCAGTGCATCTCCGGGGCTCTCCTTGGTGACAGGCGGAGTGATACTG
CTGCTGGTGCTGCTGCTCCCCTTGCTAACACTCTTGCCTCCAACCGTAAA
GATGATGGCAAGGACACCGCCCATCACCGCCGCTAAGATGAGTCCCCCAA
CGACGTAG back to top
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